Os05g0489100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Prolyl 4-hydroxylase alpha subunit-like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0489100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Prolyl 4-hydroxylase alpha subunit-like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.37 | 0.323 | 9.37 | -1.29 | 0.518 | 2.07 | -0.0273 | -1.66 | -0.455 | 0.463 | 9.209 | 205 | -- | -- |
| 49 | 0.326 | 9.35 | -1.03 | 0.588 | 2.08 | 0.232 | -- | -0.388 | 0.256 | 7.479 | 147 | -- | -- |
| 47.37 | 0.321 | 9.37 | -1.29 | 0.518 | 2.07 | -- | -1.64 | -0.454 | 0.462 | 9.013 | 205 | -- | -- |
| 49.21 | 0.327 | 9.35 | -1.04 | 0.601 | 2.08 | -- | -- | -0.389 | 0.165 | 7.542 | 134 | -- | -- |
| 51.04 | 0.333 | 9.36 | -1.29 | -- | 1.88 | -- | -1.32 | -0.446 | -- | 7.149 | 612 | -- | -- |
| 91.68 | 0.449 | 9.29 | -0.604 | 0.509 | -- | 0.235 | -- | -0.102 | 19.9 | -- | -- | -- | -- |
| 91.84 | 0.449 | 9.29 | -0.61 | 0.509 | -- | -- | -- | -0.102 | 19.9 | -- | -- | -- | -- |
| 52.45 | 0.337 | 9.33 | -1.06 | -- | 1.86 | -- | -- | -0.384 | -- | 3.475 | 629 | -- | -- |
| 74.77 | 0.403 | 9.31 | -- | 0.518 | 1.57 | -- | -- | -0.215 | 23.2 | 10.84 | 126 | -- | -- |
| 105.91 | 0.481 | 9.27 | -0.616 | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
| 101.65 | 0.472 | 9.27 | -- | 0.513 | -- | -- | -- | -0.034 | 19.8 | -- | -- | -- | -- |
| 78.99 | 0.414 | 9.3 | -- | -- | 1.49 | -- | -- | -0.218 | -- | 12.53 | 523 | -- | -- |
| 115.91 | 0.503 | 9.26 | -- | -- | -- | -- | -- | -0.0405 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 3 | 47.82 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 11 | 48.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 28 | 48.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 8 |
| 37 | 48.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 17 |
| 91 | 49.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 6 |
| 112 | 49.24 | temperature | 15 | 1440 | > th | dose dependent | sin | 8 | NA |
| 181 | 49.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 203 | 49.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 218 | 49.68 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 243 | 49.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 263 | 49.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 269 | 49.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 280 | 49.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 282 | 49.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 284 | 49.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 325 | 50.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 356 | 50.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 361 | 50.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 443 | 50.28 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 554 | 50.54 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 691 | 50.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 840 | 51.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |