Os04g0346000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prolyl 4-hydroxylase, alpha subunit domain containing protein.
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Os04g0346000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prolyl 4-hydroxylase, alpha subunit domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.86 | 0.37 | 9.35 | -1.34 | 0.953 | 0.601 | 0.132 | -1.06 | 0.229 | 4.4 | 10 | 1443 | -- | -- |
| 63.91 | 0.372 | 9.35 | -1.45 | 0.966 | 0.573 | 0.134 | -- | 0.202 | 4.38 | 10 | 1449 | -- | -- |
| 61.91 | 0.366 | 9.35 | -1.34 | 0.953 | 0.6 | -- | -1.06 | 0.229 | 4.4 | 10 | 1443 | -- | -- |
| 63.95 | 0.372 | 9.35 | -1.45 | 0.964 | 0.576 | -- | -- | 0.2 | 4.38 | 10 | 1449 | -- | -- |
| 74.26 | 0.401 | 9.36 | -1.35 | -- | 1.09 | -- | -0.884 | 0.278 | -- | 7.468 | 1969 | -- | -- |
| 72.8 | 0.4 | 9.37 | -1.45 | 0.95 | -- | 0.0154 | -- | 0.0884 | 4.33 | -- | -- | -- | -- |
| 72.8 | 0.4 | 9.37 | -1.45 | 0.95 | -- | -- | -- | 0.0883 | 4.33 | -- | -- | -- | -- |
| 67.05 | 0.381 | 9.37 | -1.45 | -- | 1.09 | -- | -- | 0.149 | -- | 10 | 561 | -- | -- |
| 112.86 | 0.495 | 9.31 | -- | 0.979 | 0.668 | -- | -- | 0.393 | 3.91 | 34.61 | 1360 | -- | -- |
| 121.34 | 0.515 | 9.38 | -1.41 | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
| 128.13 | 0.529 | 9.34 | -- | 0.922 | -- | -- | -- | 0.25 | 4.36 | -- | -- | -- | -- |
| 119.36 | 0.509 | 9.33 | -- | -- | 1.15 | -- | -- | 0.343 | -- | 17.05 | 569 | -- | -- |
| 173.87 | 0.615 | 9.34 | -- | -- | -- | -- | -- | 0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.18 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 60.22 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 4 | 60.26 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 8 | 60.80 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 15 | 61.12 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 7 | 9 |
| 18 | 61.18 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 20 | 61.26 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 22 | 61.28 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 27 | 61.33 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 7 |
| 29 | 61.38 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 12 |
| 33 | 61.44 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 1 | NA |
| 40 | 61.46 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 61 | 61.52 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 70 | 61.56 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 72 | 61.58 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 79 | 61.61 | humidity | 90.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 86 | 61.64 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 87 | 61.65 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 99 | 61.65 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 6 | 15 |
| 107 | 61.66 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 113 | 61.68 | radiation | 10.0 | 720 | < th | dose independent | sin | 14 | NA |
| 115 | 61.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 116 | 61.70 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 148 | 61.75 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 174 | 61.84 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 3 | 20 |
| 210 | 61.87 | radiation | 10.0 | 1440 | < th | dose dependent | no | NA | NA |
| 223 | 61.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 225 | 61.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 227 | 61.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 15 |
| 232 | 61.89 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 233 | 61.89 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 240 | 61.90 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 251 | 61.90 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 22 | 16 |
| 254 | 61.90 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 274 | 61.92 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 282 | 61.94 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 13 | 20 |
| 305 | 61.96 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 317 | 61.98 | radiation | 1.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 349 | 62.04 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 352 | 62.04 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 354 | 62.05 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 373 | 62.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 376 | 62.07 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 378 | 62.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 380 | 62.07 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 400 | 62.08 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 423 | 62.08 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 425 | 62.09 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 561 | 62.15 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 22 | 16 |
| 563 | 62.15 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 586 | 62.17 | radiation | 40.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 715 | 62.23 | radiation | 1.0 | 1440 | > th | dose dependent | no | NA | NA |
| 770 | 62.24 | wind | 9.0 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 823 | 62.27 | humidity | 70.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 871 | 62.29 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 22 |
| 886 | 62.29 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 907 | 62.31 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 928 | 62.32 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 962 | 62.34 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 969 | 62.35 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |