Os01g0174500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prolyl 4-hydroxylase, alpha subunit domain containing protein.
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Os01g0174500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prolyl 4-hydroxylase, alpha subunit domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.55 | 0.284 | 6.7 | -4.99 | 0.492 | -113 | 0.382 | -233 | -0.00959 | 4.61 | 15 | 4242 | -- | -- |
| 43.57 | 0.31 | 8.26 | -1.3 | 0.508 | -1.71 | 0.244 | -- | 0.08 | 4.56 | 15 | 4242 | -- | -- |
| 36.89 | 0.283 | 6.73 | -4.91 | 0.483 | -113 | -- | -232 | -0.0115 | 4.69 | 14.98 | 4235 | -- | -- |
| 39.59 | 0.293 | 8.27 | -1.53 | 0.482 | -1.42 | -- | -- | 0.0178 | 4.77 | 15.1 | 3101 | -- | -- |
| 49.9 | 0.329 | 6.74 | -4.87 | -- | -113 | -- | -232 | 0.00177 | -- | 14.98 | 4233 | -- | -- |
| 49.22 | 0.329 | 8.25 | -1.24 | 0.496 | -- | 0.345 | -- | 0.0976 | 4.66 | -- | -- | -- | -- |
| 49.49 | 0.329 | 8.25 | -1.24 | 0.501 | -- | -- | -- | 0.0959 | 4.86 | -- | -- | -- | -- |
| 50.9 | 0.332 | 8.29 | -1.58 | -- | -1.25 | -- | -- | -0.0184 | -- | 18.6 | 2720 | -- | -- |
| 87.59 | 0.438 | 8.22 | -- | 0.483 | -1.06 | -- | -- | 0.228 | 4.81 | 15.1 | 3101 | -- | -- |
| 62.75 | 0.37 | 8.26 | -1.22 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 89.8 | 0.443 | 8.22 | -- | 0.479 | -- | -- | -- | 0.234 | 4.94 | -- | -- | -- | -- |
| 99.94 | 0.467 | 8.23 | -- | -- | -0.99 | -- | -- | 0.238 | -- | 15.1 | 3101 | -- | -- |
| 101.89 | 0.471 | 8.23 | -- | -- | -- | -- | -- | 0.244 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.36 | temperature | 20 | 1440 | < th | dose dependent | sin | 18 | NA |
| 2 | 36.41 | temperature | 20 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 4 | 36.42 | temperature | 15 | 4320 | < th | dose dependent | rect. | 1 | 21 |
| 6 | 36.44 | temperature | 20 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 18 | 36.52 | temperature | 20 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 23 | 36.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 24 | 36.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 40 | 36.58 | temperature | 15 | 4320 | < th | dose dependent | rect. | 18 | 17 |
| 45 | 36.59 | temperature | 15 | 4320 | < th | dose dependent | rect. | 18 | 13 |
| 64 | 36.60 | temperature | 20 | 1440 | > th | dose independent | sin | 19 | NA |
| 99 | 36.62 | temperature | 20 | 1440 | < th | dose independent | sin | 19 | NA |
| 109 | 36.62 | temperature | 15 | 4320 | < th | dose dependent | rect. | 10 | 21 |
| 140 | 36.64 | temperature | 15 | 4320 | < th | dose dependent | no | NA | NA |
| 161 | 36.66 | temperature | 15 | 4320 | < th | dose dependent | sin | 11 | NA |
| 214 | 36.76 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 336 | 37.04 | temperature | 15 | 4320 | < th | dose dependent | sin | 1 | NA |
| 377 | 37.14 | temperature | 20 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 394 | 37.17 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 401 | 37.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 404 | 37.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 407 | 37.19 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 448 | 37.27 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 478 | 37.32 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 490 | 37.35 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 11 |
| 506 | 37.39 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 507 | 37.39 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 562 | 37.47 | humidity | 60 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 593 | 37.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 603 | 37.55 | humidity | 70 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 645 | 37.58 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 655 | 37.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 664 | 37.60 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 674 | 37.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 687 | 37.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 724 | 37.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 740 | 37.71 | temperature | 15 | 4320 | < th | dose dependent | rect. | 24 | 2 |
| 800 | 37.78 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 838 | 37.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 839 | 37.82 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 845 | 37.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 872 | 37.85 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 894 | 37.87 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 919 | 37.89 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 944 | 37.92 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 954 | 37.93 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 961 | 37.93 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 17 |