BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0203400 Os04g0203400|Os04g0203400
(214 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0203400 Conserved hypothetical protein 440 e-124
Os05g0341100 Protein of unknown function DUF239, plant doma... 138 2e-33
Os02g0795600 Protein of unknown function DUF239, plant doma... 117 6e-27
Os02g0792500 105 3e-23
Os07g0205500 Protein of unknown function DUF239, plant doma... 81 4e-16
Os07g0573400 Protein of unknown function DUF239, plant doma... 77 1e-14
Os11g0284600 Protein of unknown function DUF239, plant doma... 73 2e-13
Os05g0333100 70 1e-12
Os01g0547133 Protein of unknown function DUF239, plant doma... 69 2e-12
Os01g0973100 Protein of unknown function DUF239, plant doma... 69 3e-12
Os01g0550800 Protein of unknown function DUF239, plant doma... 68 4e-12
Os08g0566100 Protein of unknown function DUF239, plant doma... 66 2e-11
>Os04g0203400 Conserved hypothetical protein
Length = 214
Score = 440 bits (1131), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MTKPLELPVIIFISYLVLLAAGIQEGRYVKHEASYDQPISDKIINKIIETGDGDVFHCID 60
MTKPLELPVIIFISYLVLLAAGIQEGRYVKHEASYDQPISDKIINKIIETGDGDVFHCID
Sbjct: 1 MTKPLELPVIIFISYLVLLAAGIQEGRYVKHEASYDQPISDKIINKIIETGDGDVFHCID 60
Query: 61 INLQPALSHPLLKGHIIQMEPTSYPSELKIKSSSDTIATEAHLPTIACPKGTIPLLQNSK 120
INLQPALSHPLLKGHIIQMEPTSYPSELKIKSSSDTIATEAHLPTIACPKGTIPLLQNSK
Sbjct: 61 INLQPALSHPLLKGHIIQMEPTSYPSELKIKSSSDTIATEAHLPTIACPKGTIPLLQNSK 120
Query: 121 ADLKTQFSFDPIGNTHHRGGERAGCTTYDEIYGTQVAINVYEPKVRGQNDLSASWALMVN 180
ADLKTQFSFDPIGNTHHRGGERAGCTTYDEIYGTQVAINVYEPKVRGQNDLSASWALMVN
Sbjct: 121 ADLKTQFSFDPIGNTHHRGGERAGCTTYDEIYGTQVAINVYEPKVRGQNDLSASWALMVN 180
Query: 181 GPTGNYEGIGAGSIDPVCSSISESGTIKPKTTPN 214
GPTGNYEGIGAGSIDPVCSSISESGTIKPKTTPN
Sbjct: 181 GPTGNYEGIGAGSIDPVCSSISESGTIKPKTTPN 214
>Os05g0341100 Protein of unknown function DUF239, plant domain containing protein
Length = 367
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 111/182 (60%), Gaps = 6/182 (3%)
Query: 12 FISYLVLLAAGIQEGRYVKHEASYDQPISDKIINKIIETGDGDVFHCIDINLQPALSHPL 71
F Y + +E +++ S +Q ++++ +NKII+ DGDV+ CIDIN QPA +HPL
Sbjct: 11 FSKYQEGIGKRGEEIQHINPRRSTNQDLTNQEVNKIIQAEDGDVYDCIDINRQPAFNHPL 70
Query: 72 LKGHIIQMEPTSYPSELKIKSSSDTIATEAHLPTIACPKGTIPLLQNSKADLKTQFSFDP 131
LK H IQ++P S+P + +++ +EA LPT CP GTIP+L N++ + + + D
Sbjct: 71 LKDHKIQLKPNSFPVGIDVENPFMYPISEAQLPTAECPTGTIPILCNNRQENISTKNTDA 130
Query: 132 IGNTHHRGGERAGCTTYDEIYGTQVAINVYEPKVRGQNDLSASWALMVNGPTGNYEGIGA 191
I + + E AG +D+IYGTQ IN+YEP V+ DLS SW + NGP + IGA
Sbjct: 131 IVTSQQQ--EVAGIKYFDDIYGTQATINIYEPMVKHHWDLSGSWIQIENGP----DVIGA 184
Query: 192 GS 193
GS
Sbjct: 185 GS 186
>Os02g0795600 Protein of unknown function DUF239, plant domain containing protein
Length = 623
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 7/186 (3%)
Query: 22 GIQEGRYVKHEASYDQPISDKIINKIIETGDGDVFHCIDINLQPALSHPLLKGHIIQMEP 81
G +E + + ++ ++ +N I+ DGD++ C+D+NLQ HP+ K H IQMEP
Sbjct: 21 GGKELKSINSREKANESLTSPQVNITIQAQDGDIYDCVDVNLQTTFKHPVFKDHKIQMEP 80
Query: 82 TSYPSELKIKSSSDTIATEAHLPTIACPKGTIPLLQNSKADLKTQFSFDPIGNTHHRGGE 141
+S+P L IKS + +AHL T CP GTIP+L N+ D + + R
Sbjct: 81 SSFPVGLDIKSPLEGAVLQAHLSTFDCPIGTIPILHNNNMDNTILQRIGELASNESR-ML 139
Query: 142 RAGCTTYDEIYGTQVAINVYEPKVRGQN-DLSASWALMVNGPTGNYE-GIGAGSIDPVCS 199
AG +DE+YG + +I VY+PKV+ + DL+ASW + N P GIG GS C
Sbjct: 140 GAGIEYWDEVYGIRGSIYVYDPKVKKDSQDLTASWIQISNLPKAAVGVGIGVGS----CV 195
Query: 200 SISESG 205
S S SG
Sbjct: 196 SPSLSG 201
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 78 QMEPTSYPSELKIKSSSDTIATEAHLPTIACPKGTIPLLQNSK-ADLKTQFSFDPIGNTH 136
+MEP+S+P + IKS ++A L TI CP GTIP+++N+ A++ Q IG
Sbjct: 275 KMEPSSFPIGMDIKSPLVGAISQAQLSTIDCPIGTIPIVRNNNLANMMVQ----RIGTLA 330
Query: 137 HRGGER--AGCTTYDEIYGTQVAINVYEPKVRGQN-DLSASWALMVNGPTG-NYEGIGAG 192
+ AG +DEIYG Q +INVYEP V+ + D+SASW + P G N GIGAG
Sbjct: 331 NDDLPMLGAGIEYWDEIYGMQASINVYEPSVKKDSKDVSASWIQISVVPKGTNGIGIGAG 390
Query: 193 S 193
S
Sbjct: 391 S 391
>Os02g0792500
Length = 392
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 59 IDINLQPALSHPLLKGHIIQMEPTSYPSELKIKSSSDTIATEAHLPTIACPKGTIPLLQN 118
++ +QP HPL K H IQMEP+S P L IKS + A L TI CP GTIP+L+N
Sbjct: 42 VNKTVQPTFKHPLFKDHEIQMEPSSSPIRLDIKSPLVAAVSHAQLSTIDCPIGTIPILRN 101
Query: 119 SKADLKTQFSFDPIGNTHHRGGERAGCTTYDEIYGTQVAINVYEPKVR-GQNDLSASWAL 177
+K D + + + AG +DEIYG+Q +INVYEPKV+ NDLSASW
Sbjct: 102 NKLDTTMVQGISTLASNDLQ-QLVAGIKYWDEIYGSQASINVYEPKVKQDSNDLSASWIQ 160
Query: 178 MVNGP-TGNYEGIGAGS 193
+ + P G GIGAGS
Sbjct: 161 IGSVPKVGKGVGIGAGS 177
>Os07g0205500 Protein of unknown function DUF239, plant domain containing protein
Length = 408
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 74/163 (45%), Gaps = 24/163 (14%)
Query: 46 KIIETGDGDVFHCIDINLQPALSHPLLKGHIIQMEPTSYPSEL----KIKSSSDTIATEA 101
K IE+ DGD+ C+ ++ QPA HPLLK H +QM P +P L K +SD +
Sbjct: 43 KSIESPDGDIIDCVHLSHQPAFDHPLLKNHTLQMRPAYHPEGLYDDDKRSVASDNAGEKP 102
Query: 102 HLPTI----ACPKGTIPLLQNSKADLKTQFSFDPIGNTHH--------------RGGERA 143
L CP+GT+P+ + K DL S G H GG +
Sbjct: 103 MLQLWHQKGRCPEGTVPIRRTKKDDLLRASSLRRYGRKRHTAVNPLSIDPNMLNEGGHQH 162
Query: 144 GCTTY--DEIYGTQVAINVYEPKVRGQNDLSASWALMVNGPTG 184
D+ YG + INV+EPK++ N+ S S ++ G G
Sbjct: 163 AIAYVEGDKYYGAKATINVWEPKIQQPNEFSLSQLWILGGSFG 205
>Os07g0573400 Protein of unknown function DUF239, plant domain containing protein
Length = 430
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 22/159 (13%)
Query: 48 IETGDGDVFHCIDINLQPALSHPLLKGHIIQMEPTSYP----SELKIKSSSDT-IATEAH 102
IE+ DGD+ C+ I+ QPA HP LK H IQM P +P E K+ S +T T+
Sbjct: 69 IESPDGDIIDCVHISNQPAFDHPFLKNHTIQMRPDYHPEGLYDESKVASQQNTQTITQMW 128
Query: 103 LPTIACPKGTIPLLQNSKADLKTQFSFDPIGNTHHR----------------GGERA-GC 145
CP+ TIP+ + K D+ S G H+ G + A
Sbjct: 129 HKNGVCPENTIPIRRTKKEDVLRASSIRRYGKKKHKSTPNPMSVDPDMLNESGHQHAIAY 188
Query: 146 TTYDEIYGTQVAINVYEPKVRGQNDLSASWALMVNGPTG 184
D+ YG + INV++P++ N+ S S ++ G G
Sbjct: 189 VEGDKYYGAKATINVWQPRIEQANEFSLSQLWILGGSFG 227
>Os11g0284600 Protein of unknown function DUF239, plant domain containing protein
Length = 373
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 8/166 (4%)
Query: 37 QPISDKIINKIIETGDGDVFHCIDINLQPALSHPLLKGHIIQ-MEPTSYPSELKIKSSSD 95
+ + + +I K I+T DG F C+ QP+L HPLL H Q M P S+P S
Sbjct: 26 EEVDNNLIIKTIQTADGQTFACVSFKSQPSLRHPLLMNHTTQLMPPISFPHSTDDDEGSK 85
Query: 96 TIATEAHLPTIACPKGTIPLLQNSKADLKTQFSFDPI---GNTHHRGGERAGCTTY--DE 150
+ + I CP GT+P+L + + T+ SFD I N + +G +
Sbjct: 86 FGISNVEMSEIECPPGTVPILTSYNGSMSTR-SFDKIIYSENRNDKGNRQMAAVVIVPST 144
Query: 151 IYGTQVAINVYEPKVRGQNDLSASWALMVNGPTGNYEGIGAGSIDP 196
YG Q +I+++E + S A++V G+ +G S+DP
Sbjct: 145 FYGLQTSISIWETDLGTGRPPRFSGAIVVLKNGGSRVAVGW-SVDP 189
>Os05g0333100
Length = 107
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 21/104 (20%)
Query: 19 LAAGIQEGRYVKHEASYDQPISDKIINKIIETGDGDVFHCIDINLQPALSHPLLKGHIIQ 78
+A G +E +Y+ + Q +++ +NK IE DGDV+ CI++N QP +HPLLK H IQ
Sbjct: 1 MARG-EEIQYISQRGNTSQGLTNYGVNKTIEAEDGDVYDCINMNRQPGFNHPLLKDHTIQ 59
Query: 79 MEPTSYPSELKIKSSSDTIATEAHLPTIACPKGTIPLLQNSKAD 122
+L T CP GTIP+L+N K D
Sbjct: 60 --------------------KHNYLATAECPIGTIPVLRNKKQD 83
>Os01g0547133 Protein of unknown function DUF239, plant domain containing protein
Length = 424
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 20/190 (10%)
Query: 14 SYLVLLAAGIQEGRYVKHEASYDQPISDKIINKIIETGDGDVFHCIDINLQPALSHPLLK 73
S L AG + RY + +A + +K + IE+ DGD+ C+ +LQPA HP L+
Sbjct: 33 SATAALRAGRELRRYRRVQALLRR--VNKPAVRTIESPDGDLIDCVAAHLQPAFDHPRLR 90
Query: 74 GHIIQMEPTSYPSELKIK-SSSDTIATEAHLPTIA-------CPKGTIPLLQNSKADLKT 125
G P P + + +DT A +A + A CP+G++P+ + ++AD+
Sbjct: 91 GQRPLRGPPERPRGWRPRPGPNDTAAGDAGVQLWASSAGGASCPEGSVPIRRTTEADVLR 150
Query: 126 QFSFDPIG---------NTHHRGGERA-GCTTYDEIYGTQVAINVYEPKVRGQNDLSASW 175
S G ++ G E A G +E YG + +INV+ PKV + S S
Sbjct: 151 ASSVRRFGRAPTARVRRDSVSGGHEHAVGYVAGEEYYGAKASINVWAPKVSTPEEFSLSQ 210
Query: 176 ALMVNGPTGN 185
++ G GN
Sbjct: 211 IWVIAGSFGN 220
>Os01g0973100 Protein of unknown function DUF239, plant domain containing protein
Length = 256
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 48 IETGDGDVFHCIDINLQPALSHPLLKGHIIQMEPTSYPSELKIKSSSDTIATEAHLPTIA 107
I++ DGD+ C+ I+ QPA HPLLK H IQM P+ PS + +++ T
Sbjct: 62 IQSPDGDIIDCVHISKQPAFDHPLLKNHTIQMRPSIQPSGMYGEAARPFTQTWNQNGE-K 120
Query: 108 CPKGTIPLLQNSKADL-----------KTQFSFDP----IGNTHHRGGERAGCTTYDEIY 152
CP T+P+ + + D+ KT S P + + HH+ G A T Y
Sbjct: 121 CPDNTVPIRRTKEEDVMRATSVATFGKKTHGSHHPRLAGVTDGHHQYGV-ASATGDANYY 179
Query: 153 GTQVAINVYEPKVRGQNDLSASWALMVNGPTGNYEGIGAGSIDP---VCSSISESGTIK 208
GT+ IN+++P + D S + L ++ G+Y+ +I+ VC ++ +G+I+
Sbjct: 180 GTKATINLWQPTIATSGDFSLA-QLWISA--GSYQNKDLNTIEAGWQVCETL-RAGSIQ 234
>Os01g0550800 Protein of unknown function DUF239, plant domain containing protein
Length = 406
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 69/153 (45%), Gaps = 21/153 (13%)
Query: 42 KIINK----IIETGDGDVFHCIDINLQPALSHPLLKGHIIQMEPTSYPSELKIKSSSDTI 97
K +NK ++ DGD+ C+ I+ QPA HPLLK H IQM P+ PS L +++
Sbjct: 40 KRLNKPPLATFQSLDGDIIDCVHISNQPAFDHPLLKDHTIQMRPSIQPSGLYGEATRPFT 99
Query: 98 ATEAHLPTIACPKGTIPLLQNSKADLKTQFSFDPIG-NTH--------HRGGERAG---- 144
T CP TIP+ + + D+ S G TH H GG G
Sbjct: 100 QTWNQNGE-KCPDNTIPIRRTKEEDVMRATSVTTFGKKTHGGSPHPHSHLGGVTDGHHYG 158
Query: 145 ---CTTYDEIYGTQVAINVYEPKVRGQNDLSAS 174
T YGT+V INV++P + D S S
Sbjct: 159 VAYATGDSNYYGTKVTINVWQPTIATFGDFSLS 191
>Os08g0566100 Protein of unknown function DUF239, plant domain containing protein
Length = 433
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
Query: 46 KIIETGDGDVFHCIDINLQPALSHPLLKGHIIQMEPTSYPSELKIKSSSDTIATEAHLP- 104
+ I + DGD+ C+ + Q AL HPLL H +Q +P+ P+ + ++ A
Sbjct: 64 RSIHSADGDIIDCVPRHKQRALDHPLLANHTVQTQPSQMPASASLLDRRQQLSRRAWQTW 123
Query: 105 --TIACPKGTIPLLQNSKADLKTQFSFDPIGNTHH-------------RGGERAGCTTYD 149
+ CP+GT+ + + + AD++ S G G E A T
Sbjct: 124 HHSGHCPRGTVAVRRTAAADVQRARSLALFGRKKQMRSPLPAPDVVTGNGHEHAIAYTAA 183
Query: 150 EIYGTQVAINVYEPKVRGQNDLSAS--WALMVNGPTGNYEGIGAGSID 195
E+YG + I+V+ P++ N S S W L +G++ G SI+
Sbjct: 184 EVYGARATISVWAPEIDEANGFSLSQLWIL-----SGSFNGSDLNSIE 226
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,795,567
Number of extensions: 333054
Number of successful extensions: 497
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 14
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)