Os04g0203400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0203400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 441.72 | 0.987 | 3.43 | -1.47 | 0.266 | 8.73 | 0.293 | -43.3 | -0.292 | 8.72 | 1000 | 288 | -- | -- |
| 446.51 | 0.992 | 3.2 | -0.179 | 0.254 | 1.26 | 0.285 | -- | -0.289 | 8.45 | 1000 | 288 | -- | -- |
| 441.99 | 0.979 | 3.43 | -1.45 | 0.264 | 8.63 | -- | -42.7 | -0.292 | 8.93 | 1000 | 287 | -- | -- |
| 445.35 | 0.983 | 3.2 | -0.167 | 0.263 | 1.38 | -- | -- | -0.29 | 8.78 | 999.8 | 283 | -- | -- |
| 445.98 | 0.984 | 3.43 | -1.43 | -- | 8.54 | -- | -42.3 | -0.29 | -- | 1000 | 286 | -- | -- |
| 460.02 | 1.01 | 3.21 | -0.0762 | 0.252 | -- | 0.267 | -- | -0.328 | 8.61 | -- | -- | -- | -- |
| 460.23 | 1 | 3.21 | -0.0669 | 0.251 | -- | -- | -- | -0.328 | 8.86 | -- | -- | -- | -- |
| 449.29 | 0.987 | 3.21 | -0.17 | -- | 1.36 | -- | -- | -0.287 | -- | 999.8 | 271 | -- | -- |
| 446.06 | 0.984 | 3.2 | -- | 0.265 | 1.4 | -- | -- | -0.274 | 8.8 | 999.3 | 283 | -- | -- |
| 463.82 | 1.01 | 3.21 | -0.0668 | -- | -- | -- | -- | -0.326 | -- | -- | -- | -- | -- |
| 460.35 | 1 | 3.21 | -- | 0.251 | -- | -- | -- | -0.32 | 8.88 | -- | -- | -- | -- |
| 450.01 | 0.988 | 3.2 | -- | -- | 1.38 | -- | -- | -0.272 | -- | 999.4 | 271 | -- | -- |
| 463.93 | 1.01 | 3.21 | -- | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 427.19 | wind | 9.0 | 90 | > th | dose independent | rect. | 16 | 1 |
| 2 | 427.67 | wind | 7.0 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 3 | 428.47 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 7 | 7 |
| 4 | 428.50 | wind | 7.0 | 10 | > th | dose independent | rect. | 17 | 1 |
| 9 | 430.24 | humidity | 70.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 69 | 430.24 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 129 | 430.47 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 7 |
| 130 | 430.91 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 7 | 7 |
| 133 | 431.06 | radiation | 1.0 | 10 | < th | dose independent | rect. | 7 | 7 |
| 135 | 431.12 | wind | 5.0 | 10 | > th | dose dependent | rect. | 17 | 2 |
| 138 | 431.25 | wind | 9.0 | 90 | > th | dose independent | rect. | 16 | 3 |
| 147 | 432.58 | wind | 9.0 | 90 | > th | dose independent | rect. | 16 | 10 |
| 170 | 433.99 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 17 | 17 |
| 171 | 434.08 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 174 | 434.09 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 178 | 434.09 | wind | 1.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 179 | 434.10 | wind | 1.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 205 | 434.65 | radiation | 1.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 215 | 434.65 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 231 | 435.23 | wind | 9.0 | 90 | > th | dose dependent | rect. | 16 | 10 |
| 241 | 435.55 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 243 | 435.75 | temperature | 30.0 | 30 | > th | dose independent | rect. | 17 | 17 |
| 248 | 435.88 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 4 | 4 |
| 260 | 435.95 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 265 | 436.08 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 4 | 4 |
| 271 | 436.12 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 2 | 19 |
| 273 | 436.26 | humidity | 80.0 | 90 | > th | dose independent | rect. | 12 | 1 |
| 274 | 436.29 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 14 | 23 |
| 276 | 436.32 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 14 | 22 |
| 278 | 436.37 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 280 | 436.39 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 282 | 436.41 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 288 | 436.44 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 297 | 436.53 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 16 | 18 |
| 300 | 436.57 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 3 | 8 |
| 306 | 436.61 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 313 | 436.69 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 17 | 18 |
| 332 | 436.94 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 379 | 437.15 | wind | 5.0 | 90 | > th | dose dependent | rect. | 2 | 4 |
| 384 | 437.21 | wind | 5.0 | 90 | > th | dose independent | rect. | 2 | 4 |
| 412 | 437.31 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 419 | 437.38 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 2 | 19 |
| 422 | 437.44 | wind | 1.0 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 437 | 437.57 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 2 | 11 |
| 550 | 438.16 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 22 | 15 |
| 576 | 438.38 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 16 | 21 |
| 582 | 438.45 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 14 | 22 |
| 586 | 438.47 | wind | 9.0 | 10 | > th | dose dependent | sin | 15 | NA |
| 614 | 438.63 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 19 | 18 |
| 618 | 438.65 | wind | 1.0 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 641 | 438.75 | wind | 9.0 | 90 | > th | dose independent | sin | 15 | NA |
| 651 | 438.79 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 4 | 8 |
| 659 | 438.86 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 3 | 7 |
| 702 | 439.09 | wind | 1.0 | 30 | < th | dose independent | rect. | 13 | 11 |
| 746 | 439.38 | wind | 9.0 | 90 | > th | dose independent | sin | 12 | NA |
| 747 | 439.38 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 2 | 8 |
| 765 | 439.45 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 17 | 21 |
| 795 | 439.66 | atmosphere | 1000.0 | 720 | < th | dose independent | sin | 8 | NA |
| 797 | 439.66 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 808 | 439.67 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 14 | 20 |
| 811 | 439.70 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 914 | 440.04 | atmosphere | 1000.0 | 90 | < th | dose independent | sin | 3 | NA |
| 930 | 440.11 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 19 | 16 |
| 933 | 440.12 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 12 | 3 |
| 982 | 440.33 | wind | 9.0 | 90 | < th | dose independent | sin | 15 | NA |
| 984 | 440.34 | atmosphere | 1000.0 | 720 | > th | dose independent | sin | 8 | NA |
| 989 | 440.36 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 5 | 16 |