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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0795600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF239, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0174) R2 : 0.00206
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0356 (0.0367) R2dN8 : 0.00266 R2N8 : 0.00206
σ : 0.328
deviance : 49.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.23 0.317 2.87 0.00807 0.0485 0.619 -0.18 -1.79 0.0425 4.76 1015 10 -- --
47.57 0.324 2.87 -0.0168 0.0205 0.635 -0.296 -- 0.0391 2.43 1015 10 -- --
46.26 0.319 2.87 0.0102 0.0561 0.608 -- -1.76 0.0438 6.71 1014 32 -- --
46.54 0.318 2.85 0.00774 0.0533 0.92 -- -- 0.051 7.39 1016 62 -- --
46.43 0.319 2.87 0.0115 -- 0.602 -- -1.76 0.0448 -- 1014 32 -- --
48.95 0.328 2.87 -0.0194 0.0408 -- -0.301 -- 0.0316 2.77 -- -- -- --
49.2 0.328 2.87 -0.0124 0.0557 -- -- -- 0.033 5.38 -- -- -- --
46.44 0.317 2.87 0.0241 -- 1.22 -- -- 0.0451 -- 1016 114 -- --
46.29 0.317 2.87 -- 0.0567 1.21 -- -- 0.0414 6.76 1016 214 -- --
49.36 0.328 2.87 -0.0105 -- -- -- -- 0.0344 -- -- -- -- --
49.2 0.328 2.87 -- 0.0555 -- -- -- 0.0344 5.39 -- -- -- --
46.46 0.317 2.87 -- -- 1.21 -- -- 0.0424 -- 1016 182 -- --
49.36 0.328 2.87 -- -- -- -- -- 0.0356 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.45 atmosphere 1015.0 30 < th dose independent rect. 3 23
4 43.12 temperature 25.0 90 > th dose independent rect. 1 1
5 43.12 temperature 25.0 90 > th dose dependent rect. 1 2
9 43.17 wind 9.0 1440 < th dose independent rect. 3 1
10 43.17 temperature 10.0 1440 > th dose independent rect. 3 1
13 43.17 temperature 30.0 1440 < th dose independent rect. 3 1
17 43.17 humidity 50.0 1440 > th dose independent rect. 3 1
26 43.17 atmosphere 995.0 1440 > th dose independent rect. 3 1
27 43.17 radiation 1.0 1440 < th dose independent rect. 3 1
47 43.17 temperature 10.0 1440 > th dose independent rect. 4 23
51 43.17 atmosphere 1005.0 30 > th dose dependent rect. 2 1
52 43.17 radiation 1.0 1440 < th dose dependent rect. 3 1
69 43.18 wind 3.0 30 < th dose dependent rect. 2 1
74 43.20 wind 3.0 30 < th dose independent rect. 2 1
75 43.20 atmosphere 1005.0 30 > th dose independent rect. 2 1
81 43.21 atmosphere 995.0 30 > th dose independent rect. 3 23
86 43.22 humidity 80.0 30 > th dose independent rect. 2 1
88 43.22 humidity 50.0 30 > th dose dependent rect. 2 1
94 43.23 temperature 10.0 30 > th dose independent rect. 2 1
96 43.23 temperature 30.0 30 < th dose independent rect. 2 1
97 43.23 humidity 50.0 30 > th dose independent rect. 2 1
100 43.23 atmosphere 995.0 30 > th dose independent rect. 2 1
102 43.23 atmosphere 1010.0 30 < th dose independent rect. 2 1
104 43.23 radiation 1.0 30 < th dose independent rect. 2 1
109 43.23 precipitation 0.1 30 < th dose independent rect. 2 1
110 43.23 temperature 10.0 30 > th dose independent rect. 3 23
111 43.23 radiation 1.0 30 < th dose dependent rect. 2 1
116 43.23 precipitation 0.1 30 < th dose dependent rect. 2 1
120 43.27 atmosphere 1015.0 30 < th dose dependent rect. 2 1
123 43.31 temperature 30.0 30 < th dose dependent rect. 2 1
125 43.32 precipitation 0.1 30 < th dose independent rect. 3 23
126 43.32 precipitation 0.1 30 < th dose dependent rect. 3 23
130 43.36 wind 1.0 30 > th dose independent rect. 2 1
180 43.75 wind 9.0 30 < th dose independent rect. 3 23
194 44.53 wind 1.0 10 < th dose independent rect. 13 14
196 44.60 humidity 50.0 30 > th dose independent rect. 3 23
208 44.98 atmosphere 1005.0 270 > th dose dependent rect. 23 4
243 45.47 wind 1.0 30 < th dose dependent rect. 13 14
246 45.51 wind 1.0 30 < th dose dependent rect. 10 17
251 45.60 wind 1.0 10 > th dose independent sin 17 NA
253 45.62 temperature 30.0 30 < th dose independent rect. 3 23
280 45.69 wind 1.0 30 < th dose independent rect. 24 3
287 45.70 wind 1.0 10 < th dose independent sin 18 NA
288 45.70 temperature 25.0 270 > th dose independent rect. 23 4
294 45.79 atmosphere 1015.0 270 < th dose independent rect. 1 23
301 45.85 temperature 25.0 270 > th dose dependent rect. 23 4
312 45.92 atmosphere 1015.0 720 < th dose independent rect. 18 7
317 45.94 atmosphere 1015.0 720 < th dose independent rect. 9 15
325 46.00 atmosphere 1015.0 270 < th dose independent rect. 18 13
333 46.01 wind 1.0 30 > th dose independent rect. 3 23
338 46.04 atmosphere 1015.0 720 < th dose independent rect. 3 20
339 46.04 wind 1.0 90 < th dose dependent rect. 13 2
341 46.05 wind 1.0 90 < th dose independent rect. 13 2
357 46.07 wind 1.0 10 < th dose independent rect. 13 1
374 46.07 atmosphere 1015.0 10 < th dose independent rect. 14 12
376 46.07 wind 1.0 10 < th dose dependent rect. 13 1
456 46.13 atmosphere 1015.0 10 < th dose independent sin 12 NA
466 46.13 atmosphere 1015.0 720 < th dose independent sin 21 NA
467 46.13 atmosphere 1015.0 30 < th dose independent sin 0 NA
519 46.16 wind 1.0 30 < th dose dependent rect. 10 4
555 46.20 atmosphere 1015.0 720 > th dose independent sin 22 NA
564 46.20 atmosphere 1015.0 720 > th dose dependent rect. 3 20
572 46.21 atmosphere 1015.0 720 > th dose dependent sin 22 NA
588 46.22 humidity 90.0 90 < th dose independent rect. 2 1
596 46.23 atmosphere 1015.0 10 > th dose independent sin 7 NA
692 46.23 atmosphere 1015.0 10 > th dose independent no NA NA
706 46.23 atmosphere 1015.0 10 < th dose independent no NA NA
710 46.23 atmosphere 1015.0 270 > th dose independent rect. 20 1
717 46.23 atmosphere 1015.0 10 > th dose independent rect. 23 1