BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0795600 Os02g0795600|Os02g0795600
(623 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0795600 Protein of unknown function DUF239, plant doma... 1218 0.0
Os02g0792500 277 2e-74
Os05g0341100 Protein of unknown function DUF239, plant doma... 173 3e-43
Os04g0203400 Conserved hypothetical protein 113 4e-25
Os04g0203100 Protein of unknown function DUF239, plant doma... 91 3e-18
Os05g0333100 79 1e-14
Os07g0205500 Protein of unknown function DUF239, plant doma... 70 6e-12
Os11g0284600 Protein of unknown function DUF239, plant doma... 69 9e-12
>Os02g0795600 Protein of unknown function DUF239, plant domain containing protein
Length = 623
Score = 1218 bits (3151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/623 (94%), Positives = 591/623 (94%)
Query: 1 MKANNVFQVTXXXXXXXXTIGGKELKSINSREKANESLTSPQVNITIQAQDGDIYDCVDV 60
MKANNVFQVT TIGGKELKSINSREKANESLTSPQVNITIQAQDGDIYDCVDV
Sbjct: 1 MKANNVFQVTLLLSYLLLTIGGKELKSINSREKANESLTSPQVNITIQAQDGDIYDCVDV 60
Query: 61 NLQTTFKHPVFKDHKIQMEPSSFPVGLDIKSPLEGAVLQAHLSTFDCPIGTIPILHNNNM 120
NLQTTFKHPVFKDHKIQMEPSSFPVGLDIKSPLEGAVLQAHLSTFDCPIGTIPILHNNNM
Sbjct: 61 NLQTTFKHPVFKDHKIQMEPSSFPVGLDIKSPLEGAVLQAHLSTFDCPIGTIPILHNNNM 120
Query: 121 DNTILQRIGELASNESRMLGAGIEYWDEVYGIRGSIYVYDPKVKKDSQDLTASWIQISNL 180
DNTILQRIGELASNESRMLGAGIEYWDEVYGIRGSIYVYDPKVKKDSQDLTASWIQISNL
Sbjct: 121 DNTILQRIGELASNESRMLGAGIEYWDEVYGIRGSIYVYDPKVKKDSQDLTASWIQISNL 180
Query: 181 PKAAXXXXXXXXXXXXXXLSGDNFARFHIFWVRHMMGQKESMMDHDNEELKKGCVDHNCP 240
PKAA LSGDNFARFHIFWVRHMMGQKESMMDHDNEELKKGCVDHNCP
Sbjct: 181 PKAAVGVGIGVGSCVSPSLSGDNFARFHIFWVRHMMGQKESMMDHDNEELKKGCVDHNCP 240
Query: 241 GFVIQRLKTGGWHMVQTIHQSDTGQVHNSLTSKPKMEPSSFPIGMDIKSPLVGAISQAQL 300
GFVIQRLKTGGWHMVQTIHQSDTGQVHNSLTSKPKMEPSSFPIGMDIKSPLVGAISQAQL
Sbjct: 241 GFVIQRLKTGGWHMVQTIHQSDTGQVHNSLTSKPKMEPSSFPIGMDIKSPLVGAISQAQL 300
Query: 301 STIDCPIGTIPIVRNNNLANMMVQRIGTLANDDLPMLGAGIEYWDEIYGMQASINVYEPX 360
STIDCPIGTIPIVRNNNLANMMVQRIGTLANDDLPMLGAGIEYWDEIYGMQASINVYEP
Sbjct: 301 STIDCPIGTIPIVRNNNLANMMVQRIGTLANDDLPMLGAGIEYWDEIYGMQASINVYEPS 360
Query: 361 XXXXXXXXXASWIQISVVPKGTNGIGIGAGSCVYPRSGDSFARFHIRWDNEELNKSCSDH 420
ASWIQISVVPKGTNGIGIGAGSCVYPRSGDSFARFHIRWDNEELNKSCSDH
Sbjct: 361 VKKDSKDVSASWIQISVVPKGTNGIGIGAGSCVYPRSGDSFARFHIRWDNEELNKSCSDH 420
Query: 421 NCPGFMQVSHSVGLGGRINPISVYNGPQYVINVLIFKMEPSSYPLDLDIQSILSSNISES 480
NCPGFMQVSHSVGLGGRINPISVYNGPQYVINVLIFKMEPSSYPLDLDIQSILSSNISES
Sbjct: 421 NCPGFMQVSHSVGLGGRINPISVYNGPQYVINVLIFKMEPSSYPLDLDIQSILSSNISES 480
Query: 481 NFPDIKCPTGTIPILRHNSSEAHMPNGGSQEEVWPSFSGDNFVRFHIRWDRKTKDWWLAR 540
NFPDIKCPTGTIPILRHNSSEAHMPNGGSQEEVWPSFSGDNFVRFHIRWDRKTKDWWLAR
Sbjct: 481 NFPDIKCPTGTIPILRHNSSEAHMPNGGSQEEVWPSFSGDNFVRFHIRWDRKTKDWWLAR 540
Query: 541 LDKSSAIGYRPLGYWPSKLFDTLQEKATYAFWGGWVRGPTVSLDPPPMGSGHFAKEGYRK 600
LDKSSAIGYRPLGYWPSKLFDTLQEKATYAFWGGWVRGPTVSLDPPPMGSGHFAKEGYRK
Sbjct: 541 LDKSSAIGYRPLGYWPSKLFDTLQEKATYAFWGGWVRGPTVSLDPPPMGSGHFAKEGYRK 600
Query: 601 AALVKGIRIANKDNNFVNPNVEI 623
AALVKGIRIANKDNNFVNPNVEI
Sbjct: 601 AALVKGIRIANKDNNFVNPNVEI 623
>Os02g0792500
Length = 392
Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/184 (73%), Positives = 149/184 (80%), Gaps = 1/184 (0%)
Query: 275 KMEPSSFPIGMDIKSPLVGAISQAQLSTIDCPIGTIPIVRNNNLANMMVQRIGTLANDDL 334
+MEPSS PI +DIKSPLV A+S AQLSTIDCPIGTIPI+RNN L MVQ I TLA++DL
Sbjct: 61 QMEPSSSPIRLDIKSPLVAAVSHAQLSTIDCPIGTIPILRNNKLDTTMVQGISTLASNDL 120
Query: 335 PMLGAGIEYWDEIYGMQASINVYEPXXXXXXXXXXASWIQISVVPKGTNGIGIGAGSCVY 394
L AGI+YWDEIYG QASINVYEP ASWIQI VPK G+GIGAGSCVY
Sbjct: 121 QQLVAGIKYWDEIYGSQASINVYEPKVKQDSNDLSASWIQIGSVPKVGKGVGIGAGSCVY 180
Query: 395 PR-SGDSFARFHIRWDNEELNKSCSDHNCPGFMQVSHSVGLGGRINPISVYNGPQYVINV 453
P SGDSFARFHI WDNEEL K+C DHNCPGF+QVS SVGLGGR++PISVYNGPQYVI+V
Sbjct: 181 PSFSGDSFARFHISWDNEELKKNCIDHNCPGFVQVSRSVGLGGRVHPISVYNGPQYVIDV 240
Query: 454 LIFK 457
LIFK
Sbjct: 241 LIFK 244
Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/243 (53%), Positives = 153/243 (62%), Gaps = 30/243 (12%)
Query: 1 MKANNVFQVTXXXXXXXXTIGGKELKSINSREKANESLTSPQVNITIQAQDGDIYDCVDV 60
MK NN+F+V TIGGKELKS NS E + T+ QVN T+Q
Sbjct: 1 MKGNNIFRVALLSYIIL-TIGGKELKSTNSGENTGLTFTNQQVNKTVQP----------- 48
Query: 61 NLQTTFKHPVFKDHKIQMEPSSFPVGLDIKSPLEGAVLQAHLSTFDCPIGTIPILHNNNM 120
TFKHP+FKDH+IQMEPSS P+ LDIKSPL AV A LST DCPIGTIPIL NN +
Sbjct: 49 ----TFKHPLFKDHEIQMEPSSSPIRLDIKSPLVAAVSHAQLSTIDCPIGTIPILRNNKL 104
Query: 121 DNTILQRIGELASNESRMLGAGIEYWDEVYGIRGSIYVYDPKVKKDSQDLTASWIQISNL 180
D T++Q I LASN+ + L AGI+YWDE+YG + SI VY+PKVK+DS DL+ASWIQI ++
Sbjct: 105 DTTMVQGISTLASNDLQQLVAGIKYWDEIYGSQASINVYEPKVKQDSNDLSASWIQIGSV 164
Query: 181 PKAAXXXXXXXXXXXXXXLSGDNFARFHIFWVRHMMGQKESMMDHDNEELKKGCVDHNCP 240
PK SGD+FARFHI W DNEELKK C+DHNCP
Sbjct: 165 PKVGKGVGIGAGSCVYPSFSGDSFARFHISW--------------DNEELKKNCIDHNCP 210
Query: 241 GFV 243
GFV
Sbjct: 211 GFV 213
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 55/165 (33%)
Query: 508 GSQEEVWPSFSGDNFVRFHIRWDR------------------------------------ 531
G+ V+PSFSGD+F RFHI WD
Sbjct: 174 GAGSCVYPSFSGDSFARFHISWDNEELKKNCIDHNCPGFVQVSRSVGLGGRVHPISVYNG 233
Query: 532 -------------KTKDWWLARLDKSSAIGYRPLGYWPSKLFDTLQEKATYAFWGGWVRG 578
KTK+WWLA ++ P+GYWPS F ++++K +AFWGG+V+G
Sbjct: 234 PQYVIDVLIFKDPKTKNWWLAYGSNNT-----PIGYWPSSQFSSMKDKCNFAFWGGYVQG 288
Query: 579 PTVSLDPPPMGSGHFAKEGYRKAALVKGIR-IANKDNNFVNPNVE 622
PT S DPP +GSGHFA EG+ KAA V+ I+ I +++N V P++
Sbjct: 289 PTASSDPPQIGSGHFASEGFGKAAFVRNIQAIEDENNKLVTPSIR 333
>Os05g0341100 Protein of unknown function DUF239, plant domain containing protein
Length = 367
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 123/190 (64%), Gaps = 7/190 (3%)
Query: 22 GKELKSINSREKANESLTSPQVNITIQAQDGDIYDCVDVNLQTTFKHPVFKDHKIQMEPS 81
G+E++ IN R N+ LT+ +VN IQA+DGD+YDC+D+N Q F HP+ KDHKIQ++P+
Sbjct: 22 GEEIQHINPRRSTNQDLTNQEVNKIIQAEDGDVYDCIDINRQPAFNHPLLKDHKIQLKPN 81
Query: 82 SFPVGLDIKSPLEGAVLQAHLSTFDCPIGTIPILHNNNMDNTILQRIGELASNESRMLGA 141
SFPVG+D+++P + +A L T +CP GTIPIL NN +N + + +++ + + A
Sbjct: 82 SFPVGIDVENPFMYPISEAQLPTAECPTGTIPILCNNRQENISTKNTDAIVTSQQQEV-A 140
Query: 142 GIEYWDEVYGIRGSIYVYDPKVKKDSQDLTASWIQISNLPKAAXXXXXXXXXXXXXXLSG 201
GI+Y+D++YG + +I +Y+P VK DL+ SWIQI N P SG
Sbjct: 141 GIKYFDDIYGTQATINIYEPMVKH-HWDLSGSWIQIENGPDVI-----GAGSWVSPSFSG 194
Query: 202 DNFARFHIFW 211
D+FARFHI W
Sbjct: 195 DSFARFHISW 204
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 113/219 (51%), Gaps = 60/219 (27%)
Query: 457 KMEPSSYPLDLDIQSILSSNISESNFPDIKCPTGTI------------------------ 492
+++P+S+P+ +D+++ ISE+ P +CPTGTI
Sbjct: 77 QLKPNSFPVGIDVENPFMYPISEAQLPTAECPTGTIPILCNNRQENISTKNTDAIVTSQQ 136
Query: 493 -----------------------PILRHN----SSEAHMPNG----GSQEEVWPSFSGDN 521
P+++H+ S + NG G+ V PSFSGD+
Sbjct: 137 QEVAGIKYFDDIYGTQATINIYEPMVKHHWDLSGSWIQIENGPDVIGAGSWVSPSFSGDS 196
Query: 522 FVRFHIRWDRKTKDWWLARLDKSSAIGYRPLGYWPSKLFDTLQEKATYAFWGGWVRGPTV 581
F RFHI WD KT++WWL ++ +AIGY WPS F ++E A+ A WGG+V+GPT
Sbjct: 197 FARFHISWDPKTENWWLVYGEEKTAIGY-----WPSSQFSYMKEMASKALWGGYVQGPTA 251
Query: 582 SLDPPPMGSGHFAKEGYRKAALVKGIRIANKDNNFVNPN 620
S D P MGSGHFA EGY KAA V+ I++ N DN V PN
Sbjct: 252 SEDSPQMGSGHFASEGYGKAAFVRDIQVVNDDNMRVIPN 290
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 88/143 (61%), Gaps = 8/143 (5%)
Query: 273 KPKMEPSSFPIGMDIKSPLVGAISQAQLSTIDCPIGTIPIVRNNNLANMMVQRIGTLAND 332
K +++P+SFP+G+D+++P + IS+AQL T +CP GTIPI+ NN N+ + +
Sbjct: 75 KIQLKPNSFPVGIDVENPFMYPISEAQLPTAECPTGTIPILCNNRQENISTKNTDAIVTS 134
Query: 333 DLPMLGAGIEYWDEIYGMQASINVYEPXXXXXXXXXXASWIQISVVPKGTNGIGIGAGSC 392
+ AGI+Y+D+IYG QA+IN+YEP SWIQI P IGAGS
Sbjct: 135 QQQEV-AGIKYFDDIYGTQATINIYEP-MVKHHWDLSGSWIQIENGPD-----VIGAGSW 187
Query: 393 VYPR-SGDSFARFHIRWDNEELN 414
V P SGDSFARFHI WD + N
Sbjct: 188 VSPSFSGDSFARFHISWDPKTEN 210
>Os04g0203400 Conserved hypothetical protein
Length = 214
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 2/162 (1%)
Query: 21 GGKELKSINSREKANESLTSPQVNITIQAQDGDIYDCVDVNLQTTFKHPVFKDHKIQMEP 80
G +E + + ++ ++ +N I+ DGD++ C+D+NLQ HP+ K H IQMEP
Sbjct: 22 GIQEGRYVKHEASYDQPISDKIINKIIETGDGDVFHCIDINLQPALSHPLLKGHIIQMEP 81
Query: 81 SSFPVGLDIKSPLEGAVLQAHLSTFDCPIGTIPILHNNNMDNTILQRIGELASNESR-ML 139
+S+P L IKS + +AHL T CP GTIP+L N+ D + + R
Sbjct: 82 TSYPSELKIKSSSDTIATEAHLPTIACPKGTIPLLQNSKADLKTQFSFDPIGNTHHRGGE 141
Query: 140 GAGIEYWDEVYGIRGSIYVYDPKVKKDSQDLTASWIQISNLP 181
AG +DE+YG + +I VY+PKV+ + DL+ASW + N P
Sbjct: 142 RAGCTTYDEIYGTQVAINVYEPKVRGQN-DLSASWALMVNGP 182
>Os04g0203100 Protein of unknown function DUF239, plant domain containing protein
Length = 167
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 507 GGSQEEVWPSFSGDNF-VRFHIRWDRKTKDWWLAR-LDKSSAIGYRPLGYWPSKLFDTLQ 564
GG E V +++GD + + I D KT +WWLA DK +PLGYWP +F +
Sbjct: 21 GGRIEPV-STYNGDQYEITVTISKDPKTGNWWLAYGRDK------KPLGYWPPSIFTYMN 73
Query: 565 EKATYAFWGGWVRGPTVSLDPPPMGSGHFAKEGYRKAALVKGIRIANKDNNFVNPNVE 622
EKA+ FWGG V GPTV L P +GSGH+A G KAA V+ I++ NKD+ + P
Sbjct: 74 EKASACFWGGQVHGPTVQLHLPELGSGHWAATGPGKAAYVRSIKVINKDSQYFIPGTH 131
>Os05g0333100
Length = 107
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 20/100 (20%)
Query: 22 GKELKSINSREKANESLTSPQVNITIQAQDGDIYDCVDVNLQTTFKHPVFKDHKIQMEPS 81
G+E++ I+ R ++ LT+ VN TI+A+DGD+YDC+++N Q F HP+ KDH IQ
Sbjct: 4 GEEIQYISQRGNTSQGLTNYGVNKTIEAEDGDVYDCINMNRQPGFNHPLLKDHTIQK--- 60
Query: 82 SFPVGLDIKSPLEGAVLQAHLSTFDCPIGTIPILHNNNMD 121
+L+T +CPIGTIP+L N D
Sbjct: 61 -----------------HNYLATAECPIGTIPVLRNKKQD 83
>Os07g0205500 Protein of unknown function DUF239, plant domain containing protein
Length = 408
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 97/234 (41%), Gaps = 42/234 (17%)
Query: 36 ESLTSPQVNITIQAQDGDIYDCVDVNLQTTFKHPVFKDHKIQMEPSSFPVGL--DIKSPL 93
+ L P V +I++ DGDI DCV ++ Q F HP+ K+H +QM P+ P GL D K +
Sbjct: 35 KRLNKPAVK-SIESPDGDIIDCVHLSHQPAFDHPLLKNHTLQMRPAYHPEGLYDDDKRSV 93
Query: 94 ------EGAVLQAHLSTFDCPIGTIPILHNNNMD---NTILQRIGELA-------SNESR 137
E +LQ CP GT+PI D + L+R G S +
Sbjct: 94 ASDNAGEKPMLQLWHQKGRCPEGTVPIRRTKKDDLLRASSLRRYGRKRHTAVNPLSIDPN 153
Query: 138 MLGAG-----IEY--WDEVYGIRGSIYVYDPKVKKDSQ-DLTASWIQISNLPKAAXXXXX 189
ML G I Y D+ YG + +I V++PK+++ ++ L+ WI +
Sbjct: 154 MLNEGGHQHAIAYVEGDKYYGAKATINVWEPKIQQPNEFSLSQLWILGGSF--GEDLNSI 211
Query: 190 XXXXXXXXXLSGDNFARFHIFWVRHMMGQKESMMDHDNEELKKGCVDHNCPGFV 243
L GDN R +W + GC + C GF+
Sbjct: 212 EAGWQVSPDLYGDNNTRLFTYWT-------------SDAYQATGCYNILCSGFI 252
>Os11g0284600 Protein of unknown function DUF239, plant domain containing protein
Length = 373
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 85/190 (44%), Gaps = 14/190 (7%)
Query: 276 MEPSSFPIGMDIKSPLVGAISQAQLSTIDCPIGTIPIVR--NNNLANMMVQRIGTLANDD 333
M P SFP D IS ++S I+CP GT+PI+ N +++ +I N +
Sbjct: 69 MPPISFPHSTDDDEGSKFGISNVEMSEIECPPGTVPILTSYNGSMSTRSFDKIIYSENRN 128
Query: 334 LP---MLGAGIEYWDEIYGMQASINVYEPXXXXXXXXXXASWIQISVVPKGTNGIGIGAG 390
+ A + YG+Q SI+++E + ++V G + G
Sbjct: 129 DKGNRQMAAVVIVPSTFYGLQTSISIWETDLGTGRPPRFSG----AIVVLKNGGSRVAVG 184
Query: 391 SCVYPR-SGDSFARFHIRW-DNEELNKSCSDHNCPGFMQVSHSVGLGGRINPISVYNGPQ 448
V P GD+ F I W DN+ KSC + C GF+Q+S G I P+S NG Q
Sbjct: 185 WSVDPHLYGDNLVHFEIAWVDND---KSCINLRCAGFVQMSKKAIPGIIIRPVSTVNGKQ 241
Query: 449 YVINVLIFKM 458
Y+I V I K
Sbjct: 242 YIIRVKIIKF 251
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,337,530
Number of extensions: 901600
Number of successful extensions: 1788
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1768
Number of HSP's successfully gapped: 14
Length of query: 623
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 516
Effective length of database: 11,448,903
Effective search space: 5907633948
Effective search space used: 5907633948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)