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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0284600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF239, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0347) R2 : 1.53e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00193 (0.0731) R2dN8 : 1.97e-06 R2N8 : 1.53e-06
σ : 0.654
deviance : 196.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.48 0.645 2.96 0.0436 0.0959 -0.428 0.0608 -0.464 0.0838 7.55 1.202 710 -- --
188.72 0.64 2.97 0.033 0.0859 -0.484 0.175 -- 0.0895 7.69 1.287 709 -- --
188.49 0.639 2.96 0.0448 0.096 -0.428 -- -0.493 0.0836 7.41 1.203 708 -- --
188.8 0.64 2.97 0.0342 0.0856 -0.489 -- -- 0.089 7.25 1.23 708 -- --
188.89 0.64 2.97 0.0297 -- -0.496 -- -0.423 0.0947 -- 1.212 708 -- --
192.78 0.651 2.98 0.152 0.21 -- 0.275 -- 0.0177 8.28 -- -- -- --
193.01 0.651 2.98 0.16 0.211 -- -- -- 0.0174 8.13 -- -- -- --
189.13 0.641 2.97 0.0222 -- -0.542 -- -- 0.0988 -- 1.242 708 -- --
188.83 0.64 2.97 -- 0.0827 -0.501 -- -- 0.0875 7.16 1.215 708 -- --
195.45 0.653 2.99 0.162 -- -- -- -- 0.0199 -- -- -- -- --
193.68 0.651 2.99 -- 0.212 -- -- -- -0.000461 8.08 -- -- -- --
189.14 0.641 2.97 -- -- -0.549 -- -- 0.097 -- 1.202 708 -- --
196.14 0.654 2.99 -- -- -- -- -- 0.00193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.98 precipitation 0.1 30 > th dose independent rect. 7 7
9 177.98 precipitation 0.1 30 > th dose dependent rect. 7 7
17 178.10 humidity 90.0 10 > th dose independent rect. 13 1
25 178.10 humidity 90.0 10 > th dose dependent rect. 13 1
33 178.11 precipitation 0.1 90 > th dose independent rect. 13 1
36 178.11 precipitation 0.1 90 > th dose dependent rect. 13 1
39 178.17 humidity 90.0 90 > th dose dependent rect. 13 1
41 178.19 humidity 90.0 90 > th dose independent rect. 13 1
139 180.74 wind 1.0 90 < th dose independent rect. 6 1
169 181.86 wind 3.0 720 < th dose dependent rect. 2 1
171 182.10 temperature 30.0 90 > th dose dependent rect. 10 1
180 182.93 wind 1.0 90 < th dose dependent rect. 6 1
182 183.46 temperature 25.0 90 < th dose dependent rect. 12 1
188 183.59 temperature 25.0 10 < th dose dependent rect. 14 1
192 183.61 atmosphere 1005.0 30 > th dose dependent rect. 13 1
204 183.78 wind 1.0 720 < th dose independent rect. 2 1
210 184.09 temperature 20.0 10 < th dose independent rect. 12 2
224 184.39 radiation 1.0 10 < th dose independent rect. 11 3
232 184.39 radiation 1.0 10 < th dose dependent rect. 11 3
240 184.40 radiation 1.0 10 < th dose independent rect. 13 1
259 184.40 radiation 1.0 10 < th dose dependent rect. 13 1
278 184.42 temperature 25.0 90 > th dose independent rect. 1 3
280 184.58 temperature 25.0 90 > th dose dependent rect. 1 3
284 184.76 wind 9.0 1440 < th dose independent rect. 3 1
285 184.76 temperature 10.0 1440 > th dose independent rect. 3 1
288 184.76 temperature 30.0 1440 < th dose independent rect. 3 1
292 184.76 humidity 50.0 1440 > th dose independent rect. 3 1
301 184.76 atmosphere 995.0 1440 > th dose independent rect. 3 1
302 184.76 radiation 1.0 1440 < th dose independent rect. 3 1
322 184.76 temperature 10.0 1440 > th dose independent rect. 4 23
325 184.76 radiation 1.0 1440 < th dose dependent rect. 3 1
336 184.78 atmosphere 1005.0 30 > th dose dependent rect. 2 1
339 184.79 wind 3.0 30 < th dose dependent rect. 2 1
340 184.80 wind 1.0 30 < th dose independent rect. 2 1
346 184.83 temperature 20.0 30 > th dose independent rect. 2 1
352 184.86 humidity 90.0 30 > th dose independent rect. 2 1
354 184.87 atmosphere 1005.0 30 > th dose independent rect. 2 1
360 184.91 temperature 10.0 30 > th dose independent rect. 2 1
362 184.91 temperature 25.0 30 < th dose independent rect. 2 1
364 184.91 humidity 50.0 30 > th dose independent rect. 2 1
368 184.91 atmosphere 995.0 30 > th dose independent rect. 2 1
369 184.91 atmosphere 1010.0 30 < th dose independent rect. 2 1
371 184.91 radiation 1.0 30 < th dose independent rect. 2 1
376 184.91 precipitation 0.1 30 < th dose independent rect. 2 1
377 184.91 temperature 10.0 30 > th dose independent rect. 3 23
378 184.91 humidity 50.0 30 > th dose dependent rect. 2 1
382 184.91 radiation 1.0 30 < th dose dependent rect. 2 1
387 184.91 precipitation 0.1 30 < th dose dependent rect. 2 1
404 185.02 atmosphere 1015.0 30 < th dose dependent rect. 2 1
415 185.18 temperature 30.0 30 < th dose dependent rect. 2 1
418 185.21 atmosphere 1000.0 30 > th dose independent rect. 3 23
419 185.23 atmosphere 1005.0 30 > th dose independent rect. 13 1
435 185.41 wind 1.0 30 > th dose independent rect. 2 1
439 185.45 atmosphere 1005.0 10 > th dose dependent rect. 2 3
444 185.52 wind 1.0 90 < th dose independent rect. 6 10
489 185.67 temperature 30.0 90 > th dose independent rect. 10 1
506 185.74 radiation 30.0 10 > th dose independent rect. 8 1
509 185.77 precipitation 0.1 30 < th dose independent rect. 3 23
510 185.77 precipitation 0.1 30 < th dose dependent rect. 3 23
520 185.83 humidity 60.0 10 > th dose dependent rect. 13 1
522 185.84 wind 1.0 90 < th dose independent rect. 6 17
531 185.92 temperature 30.0 10 > th dose dependent rect. 12 1
537 185.97 wind 1.0 1440 < th dose independent rect. 20 1
544 186.04 radiation 30.0 10 < th dose independent rect. 14 1
565 186.21 wind 1.0 90 < th dose independent rect. 6 21
588 186.28 atmosphere 1000.0 10 < th dose dependent rect. 4 5
590 186.30 humidity 50.0 30 > th dose independent rect. 3 23
594 186.31 temperature 25.0 90 > th dose independent rect. 1 5
595 186.31 temperature 20.0 270 < th dose dependent rect. 10 4
598 186.32 precipitation 0.1 270 > th dose independent rect. 10 1
603 186.32 temperature 20.0 270 < th dose dependent rect. 10 1
605 186.32 precipitation 0.1 270 > th dose dependent rect. 10 1
610 186.33 temperature 20.0 270 < th dose independent rect. 10 1
620 186.37 atmosphere 1000.0 10 < th dose independent rect. 4 4
623 186.40 temperature 20.0 270 < th dose independent rect. 10 4
626 186.40 radiation 30.0 10 > th dose dependent rect. 8 1
629 186.41 atmosphere 1000.0 270 < th dose independent rect. 4 1
631 186.41 atmosphere 1000.0 270 < th dose dependent rect. 4 1
642 186.46 temperature 25.0 1440 < th dose independent rect. 1 1
644 186.47 radiation 30.0 10 < th dose independent rect. 12 3
645 186.47 temperature 25.0 30 > th dose dependent rect. 7 1
649 186.49 temperature 25.0 90 > th dose independent rect. 1 7
682 186.72 wind 1.0 1440 > th dose independent rect. 20 1
693 186.75 wind 9.0 30 < th dose independent rect. 3 23
695 186.76 wind 1.0 1440 > th dose independent rect. 2 2
708 186.81 wind 1.0 720 < th dose independent rect. 2 5
749 187.07 wind 1.0 270 > th dose independent rect. 1 9
760 187.13 wind 1.0 720 < th dose independent rect. 2 8
780 187.26 atmosphere 1005.0 10 < th dose independent rect. 8 1
817 187.44 wind 1.0 720 < th dose independent rect. 2 20
874 187.62 wind 1.0 720 > th dose independent rect. 14 20
880 187.63 temperature 25.0 720 < th dose independent rect. 23 5
887 187.67 wind 1.0 720 > th dose independent rect. 14 17
910 187.75 humidity 80.0 4320 < th dose dependent rect. 1 1
912 187.76 temperature 25.0 30 > th dose independent rect. 7 1
941 187.90 wind 1.0 720 > th dose dependent rect. 2 2
950 187.95 wind 1.0 720 > th dose independent rect. 18 16
968 188.00 wind 5.0 90 > th dose dependent rect. 13 1
981 188.03 atmosphere 1010.0 10 < th dose dependent rect. 6 2
994 188.06 temperature 25.0 270 > th dose dependent rect. 23 8
996 188.07 atmosphere 1010.0 90 < th dose dependent rect. 6 1