BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0201500 Os04g0201500|Os04g0201500
(224 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0201500 Amino acid/polyamine transporter II family pro... 391 e-109
Os02g0101000 Amino acid/polyamine transporter II family pro... 297 4e-81
Os12g0574000 Amino acid/polyamine transporter II family pro... 182 2e-46
Os04g0460300 Amino acid/polyamine transporter II family pro... 139 2e-33
Os06g0228500 Amino acid/polyamine transporter II family pro... 135 2e-32
Os01g0597400 Amino acid/polyamine transporter II family pro... 124 6e-29
Os01g0586500 116 1e-26
Os04g0460000 115 3e-26
Os01g0597600 Amino acid/polyamine transporter II family pro... 114 5e-26
Os05g0364700 110 6e-25
Os11g0298000 96 2e-20
Os01g0585900 69 3e-12
>Os04g0201500 Amino acid/polyamine transporter II family protein
Length = 224
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/224 (87%), Positives = 195/224 (87%)
Query: 1 MCLGSHLVHXXXXXXXXXXXXXXXCLFWVGLVDHIEAKDEGTALNLPGIPIAVGLYGYCY 60
MCLGSHLVH CLFWVGLVDHIEAKDEGTALNLPGIPIAVGLYGYCY
Sbjct: 1 MCLGSHLVHSVIAGGVIASIVIVACLFWVGLVDHIEAKDEGTALNLPGIPIAVGLYGYCY 60
Query: 61 SGHGVFPNIYSSMKKRSQFPAVIFTCIALSTVLFAGAAIMGYIMFGESTESQFTLNLPSN 120
SGHGVFPNIYSSMKKRSQFPAVIFTCIALSTVLFAGAAIMGYIMFGESTESQFTLNLPSN
Sbjct: 61 SGHGVFPNIYSSMKKRSQFPAVIFTCIALSTVLFAGAAIMGYIMFGESTESQFTLNLPSN 120
Query: 121 LVASKIAVWTTTYSNIVMLRXXXXXXXXXXXXXXPFFGLVMSLVGSFLTMFVAYILPCAC 180
LVASKIAVWTTTYSNIVMLR PFFGLVMSLVGSFLTMFVAYILPCAC
Sbjct: 121 LVASKIAVWTTTYSNIVMLRSALVLSSLIVALSVPFFGLVMSLVGSFLTMFVAYILPCAC 180
Query: 181 FLAILRRTVTWYQVLLCVFIIVVGLCCAGVGTYSSLSKIIQNYK 224
FLAILRRTVTWYQVLLCVFIIVVGLCCAGVGTYSSLSKIIQNYK
Sbjct: 181 FLAILRRTVTWYQVLLCVFIIVVGLCCAGVGTYSSLSKIIQNYK 224
>Os02g0101000 Amino acid/polyamine transporter II family protein
Length = 571
Score = 297 bits (761), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/227 (64%), Positives = 168/227 (74%), Gaps = 28/227 (12%)
Query: 25 CLFWVGLVDHIEAKDEGTALNLPGIPIAVGLYGYCYSGHGVFPNIYSSMKKRSQFPAVIF 84
CL WVG+VDH+ +++GTALNLPGIPIA+GLYGYCYSGHGVFPNIYSS+K R+QFP+++F
Sbjct: 344 CLCWVGVVDHVGFENKGTALNLPGIPIAIGLYGYCYSGHGVFPNIYSSLKNRNQFPSILF 403
Query: 85 TCIALSTVLFAGAAIMGYIMFGESTESQFTLNLPSNLVASKIAVWTT------------- 131
TCI LS++LFAGAA+MGY MFGESTESQFTLNLP NLV SK+AVWTT
Sbjct: 404 TCIGLSSILFAGAAVMGYKMFGESTESQFTLNLPENLVVSKVAVWTTVANPITKYALTIT 463
Query: 132 ---------------TYSNIVMLRXXXXXXXXXXXXXXPFFGLVMSLVGSFLTMFVAYIL 176
Y+NI+MLR PFFGLVM+LVGS LTM V YIL
Sbjct: 464 PLAMSLEELLPPNQQKYANIIMLRSSLVVSTLLIALSVPFFGLVMALVGSLLTMLVTYIL 523
Query: 177 PCACFLAILRRTVTWYQVLLCVFIIVVGLCCAGVGTYSSLSKIIQNY 223
PCACFLAIL+R VTW+Q+ C FIIVVG+CCA VGTYSSLSKIIQNY
Sbjct: 524 PCACFLAILKRKVTWHQIAACSFIIVVGVCCACVGTYSSLSKIIQNY 570
>Os12g0574000 Amino acid/polyamine transporter II family protein
Length = 594
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 136/226 (60%), Gaps = 28/226 (12%)
Query: 25 CLFWVGLVDHIEAKDEGTALNLPGIPIAVGLYGYCYSGHGVFPNIYSSMKKRSQFPAVIF 84
CLFWVG+ + + GTALNL P+A+GLYGYCYSGH VFPNIYSSM++R +F V+
Sbjct: 369 CLFWVGIGEGVGFHPGGTALNLTHFPVALGLYGYCYSGHSVFPNIYSSMEERPKFTFVLL 428
Query: 85 TCIALSTVLFAGAAIMGYIMFGESTESQFTLNLPSNLVASKIAVWTT------------- 131
C + T ++AG A+ G++MFGEST SQFTLN+P + SKIA+ T
Sbjct: 429 FCFIVVTFVYAGVAVAGFLMFGESTMSQFTLNMPQQFIPSKIAIGMTIINPYTKYALTLT 488
Query: 132 ---------------TYSNIVMLRXXXXXXXXXXXXXXPFFGLVMSLVGSFLTMFVAYIL 176
TY + +R P+F LVM+L+GS TM VA IL
Sbjct: 489 PVALSIEEALPRRMQTYQVGMCVRTALVASTVVVALTFPYFALVMALLGSVFTMLVALIL 548
Query: 177 PCACFLAILRRTVTWYQVLLCVFIIVVGLCCAGVGTYSSLSKIIQN 222
PCAC+L+I + + ++V+LC+ II++G+ CA VG+Y+S+S++I
Sbjct: 549 PCACYLSIKKGSTPLWEVVLCITIILLGILCACVGSYTSVSQMISR 594
>Os04g0460300 Amino acid/polyamine transporter II family protein
Length = 455
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 28/227 (12%)
Query: 25 CLFWVGLVDHIEAKDEGTALNLPGIPIAVGLYGYCYSGHGVFPNIYSSMKKRSQFPAVIF 84
C+ W + D + +G LN+ G+P A+GLY +CY GH +FP + +SM+++ +F V+
Sbjct: 229 CVLWAAVFDGVGFHGKGRMLNVSGLPTALGLYTFCYCGHAIFPTLCNSMQEKDKFSRVLV 288
Query: 85 TCIALSTVLFAGAAIMGYIMFGESTESQFTLNLPSNLVASKIAVWTT------------- 131
C TV + AI+GY+M+G+ +SQ TLNLP ++SK+A++TT
Sbjct: 289 ICFVACTVNYGSMAILGYLMYGDDVKSQVTLNLPEGKISSKLAIYTTLINPFSKYALMVT 348
Query: 132 --------------TYSNIVMLRXXXXXXXXXXXXXXPFFGLVMSLVGSFLTMFVAYILP 177
S V++R PFFG +M+LVGS L++ + +LP
Sbjct: 349 PVATAIEEKLLAGNKRSVNVLIRTLIVVSTVVIALTVPFFGHLMALVGSLLSVMASMLLP 408
Query: 178 CACFLAILRRTVTWY-QVLLCVFIIVVGLCCAGVGTYSSLSKIIQNY 223
C C+L I T + LL IIV+G A GTYSSL KI +
Sbjct: 409 CICYLKIFGLTRCGRGETLLIAAIIVLGSLVAATGTYSSLKKIFYEF 455
>Os06g0228500 Amino acid/polyamine transporter II family protein
Length = 413
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 41/239 (17%)
Query: 26 LFWVGLVDHIEAKDEGTALNLPGIPIAVGLYGYCYSGHGVFPNIYSSMKKRSQFPAVIFT 85
+ WVG D + ++ G A+ G+P A+ LY +C+SGH VFP IY+ M+ R FP V+
Sbjct: 175 VLWVGAADGVGFREGGVAVRWGGVPTAMSLYAFCFSGHAVFPMIYTGMRNRRMFPHVLLI 234
Query: 86 CIALSTVLFAGAAIMGYIMFGESTESQFTLNLPSNLVASKIAVWTTTYSNI--------- 136
C + T+ + ++GY+M+G S SQ TLNLP+ ++S IA++TT +
Sbjct: 235 CFIICTLAYGVMGVIGYLMYGGSLRSQVTLNLPARKLSSSIAIYTTLINPFTKFALLITP 294
Query: 137 -----------------------------VMLRXXXXXXXXXXXXXXPFFGLVMSLVGSF 167
V +R PFF V++L GSF
Sbjct: 295 IAEAIEGVLGLGTATTGGKPAQYRAAAVSVSVRTALVVSTTAVALAVPFFAYVVALTGSF 354
Query: 168 LTMFVAYILPCACFLAILRRT---VTWYQVLLCVFIIVVGLCCAGVGTYSSLSKIIQNY 223
L+ +LPCAC+L I R + +++ CV IIV+GL +GTYSSL +I+Q++
Sbjct: 355 LSATATMLLPCACYLRISSRASGKLGVLEIVACVGIIVLGLGVIVIGTYSSLKQIVQSF 413
>Os01g0597400 Amino acid/polyamine transporter II family protein
Length = 443
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 116/236 (49%), Gaps = 38/236 (16%)
Query: 26 LFWVGLVDHIEAKDEGTALNLPGIPIAVGLYGYCYSGHGVFPNIYSSMKKRSQFPAVIFT 85
L W G+ D + LNL G+P A+ LY C++GHGVFP +YSSM+ R FP V+
Sbjct: 208 LVWAGVADKGFHMAGSSILNLSGLPTALSLYFVCFAGHGVFPTVYSSMRARKDFPKVLLI 267
Query: 86 CIALSTVLFAGAAIMGYIMFGESTESQFTLNLPSNLVASKIAVWTTTYSNI--------- 136
L ++ +A A++GY ++GE ++Q TLNLP+ + ++IA+ TT + +
Sbjct: 268 SSVLCSLNYAVTAVLGYKIYGEDVQAQVTLNLPTGKLYTRIAILTTLITPLAKYALVIQP 327
Query: 137 ---------------------------VMLRXXXXXXXXXXXXXXPFFGLVMSLVGSFLT 169
V+ PFFG +MS +GS L
Sbjct: 328 VTTAIEEKLSTAAAAVAADAENNRLTRVLTSTTVVFSTVVLACTVPFFGYLMSFIGSSLN 387
Query: 170 MFVAYILPCACFLAIL--RRTVTWYQVLLCVFIIVVGLCCAGVGTYSSLSKIIQNY 223
+ VA + PC +L I R V ++V V I+V+G+C A +GTY+SL +II +
Sbjct: 388 VTVAVLFPCLSYLKIYMPRGGVGRFEVAAIVGILVIGVCVAVIGTYTSLHQIIGTF 443
>Os01g0586500
Length = 460
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 33/231 (14%)
Query: 26 LFWVGLVDHIEAKDEGTALNLPGIPIAVGLYGYCYSGHGVFPNIYSSMKKRSQFPAVIFT 85
L W G+ + + LNL +P A+ LY C++GHGVFP +YSSM + FP V+
Sbjct: 230 LVWAGVAGKGFHMEGSSLLNLSELPTALSLYFVCFAGHGVFPTVYSSMNSKKDFPKVLLI 289
Query: 86 CIALSTVLFAGAAIMGYIMFGESTESQFTLNLPSNLVASKIAVWT--------------- 130
+ L ++ +A A++GY+++GE ++Q TL+LP+ + ++IA+ T
Sbjct: 290 SLVLCSLNYAVTAVLGYLIYGEDVQAQVTLSLPTGKLYTRIAILTTLITPLAKYALVIQP 349
Query: 131 -----------TTYSNI-----VMLRXXXXXXXXXXXXXXPFFGLVMSLVGSFLTMFVAY 174
TT + I V+ PFFG ++S +GS L + VA
Sbjct: 350 VTIAIEEKLSATTDAEINRLTRVLTSTAVVISTVVLACTVPFFGYLISFIGSSLNVTVAV 409
Query: 175 ILPCACFLAIL--RRTVTWYQVLLCVFIIVVGLCCAGVGTYSSLSKIIQNY 223
+ PC +L I R V +++ + I+V+G+C A VGTY+SL +II +
Sbjct: 410 LFPCLSYLKIYMSRGGVGCFEMAAIIGILVIGVCVAIVGTYTSLQQIIGTF 460
>Os04g0460000
Length = 417
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 119/251 (47%), Gaps = 54/251 (21%)
Query: 26 LFWVGLVDHIEAKDEGTA--LNLPGIPIAVGLYGYCYSGHGVFPNIYSSMKKRSQFPAVI 83
+ W VD + GT L + G+P A+GLY +CY GH +FP +Y+SMK++SQFP V
Sbjct: 165 VLWAAAVDGVGFSGRGTTTPLRIAGLPTALGLYIFCYGGHPMFPTLYTSMKRKSQFPKVY 224
Query: 84 FTCIALSTVLF---------------------AGAAIMGYIMFGESTESQFTLNLPSNLV 122
A +T+LF A++GY+M+G+ SQ TLNLPS +
Sbjct: 225 PYTHAHNTMLFISRDFFLSVSQPICKDASDMLPAMAVLGYLMYGDGVLSQVTLNLPSARL 284
Query: 123 ASKIAVWTTTYSNI------------------------------VMLRXXXXXXXXXXXX 152
+SK+A++TT + + V +R
Sbjct: 285 SSKVAIYTTLLNPVTKYALVVTPIAAAVEERIRGAAGKGARAVSVAVRTLLVLSTVAVAL 344
Query: 153 XXPFFGLVMSLVGSFLTMFVAYILPCACFLAIL-RRTVTWYQVLLCVFIIVVGLCCAGVG 211
PFF +M+LVGS L + V +LPCAC++ I +++ + + I+V+G A G
Sbjct: 345 ALPFFADLMALVGSMLNVAVCMLLPCACYVRIFGAPSMSSVEAVAIGGILVLGSLVAVTG 404
Query: 212 TYSSLSKIIQN 222
TY SL KII+
Sbjct: 405 TYYSLMKIIRE 415
>Os01g0597600 Amino acid/polyamine transporter II family protein
Length = 424
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 30/227 (13%)
Query: 26 LFWVGLVDHIEAKDEGTALNLPGIPIAVGLYGYCYSGHGVFPNIYSSMKKRSQFPAVIFT 85
L W G+ + ++ T LNL GIP ++GLY C++GH VFP IYSSMK F V+
Sbjct: 199 LIWAGVAETGFHRNSNT-LNLAGIPTSLGLYFVCFTGHAVFPTIYSSMKNSKHFSKVLLI 257
Query: 86 CIALSTVLFAGAAIMGYIMFGESTESQFTLNLPSNLVASKIAVWTTTYSNI--------- 136
L ++ + A++GY+++G+ +SQ TLNLPS + +KIA+ T + +
Sbjct: 258 SSVLCSLNYGLTAVLGYMIYGDDVQSQVTLNLPSGKLYTKIAIVMTLVNPLAKYALLVAP 317
Query: 137 -------------------VMLRXXXXXXXXXXXXXXPFFGLVMSLVGSFLTMFVAYILP 177
V + PFFG +MS +GSFL++ + P
Sbjct: 318 ITAAVEERLSLTRGSAPARVAISTAILASTVVVASTVPFFGYLMSFIGSFLSVMATVLFP 377
Query: 178 CACFLAILRRT-VTWYQVLLCVFIIVVGLCCAGVGTYSSLSKIIQNY 223
C C+L I + + +++ I+++G+ A GTY+SL +II +
Sbjct: 378 CLCYLKIYKADGIHRTEMVAIAGILLLGVFVAVTGTYTSLLQIIATF 424
>Os05g0364700
Length = 400
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 33/229 (14%)
Query: 28 WVGLVDHIEAKDEGTALNLPGIPIAVGLYGYCYSGHGVFPNIYSSMKKRSQFPAVIFTCI 87
W G+ D LNL G+P A+ LY C++GHGVFP +YSSMK + FP V+
Sbjct: 172 WAGVPDKGFHMAGNNLLNLSGLPTALTLYFVCFAGHGVFPTVYSSMKSKKDFPKVLLISS 231
Query: 88 ALSTVLFAGAAIMGYIMFGESTESQFTLNLPSNLVASKIAVWTTTYSNI----------- 136
L ++ +A ++ Y+++GE +SQ T NLP+ + ++ A+ TT + +
Sbjct: 232 VLCSLNYAVTVVLRYLIYGEDVQSQVTQNLPTGKLYTRFAILTTLITPLANYTLVIQPVT 291
Query: 137 --------------------VMLRXXXXXXXXXXXXXXPFFGLVMSLVGSFLTMFVAYIL 176
V+ PFFG +M +GS L + VA ++
Sbjct: 292 TAIEEKLSATTDVENNWLTRVLTSIAVVISTVVLACTVPFFGYLMLFIGSSLNVTVAVLV 351
Query: 177 PCACFLAIL--RRTVTWYQVLLCVFIIVVGLCCAGVGTYSSLSKIIQNY 223
PC +L I R V ++ + V I+V+G+C VGTY+SL +II +
Sbjct: 352 PCLSYLKIYMSRGGVGCFERTMIVGILVIGVCVNVVGTYTSLHQIIGTF 400
>Os11g0298000
Length = 483
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 99/213 (46%), Gaps = 31/213 (14%)
Query: 43 ALNLPGIPIAVGLYGYCYSGHGVFPNIYSSMKKRSQFPAVIFTCIALSTVLFAGAAIMGY 102
AL L IP GLY + Y+GH VFPNI+++MK S F V A+ T L+ A +G
Sbjct: 266 ALRLERIPAVSGLYMFSYAGHIVFPNIHAAMKDPSAFTRVSVASFAVVTALYTALAFVGA 325
Query: 103 IMFGESTESQFTLNLPSNLVASKIAVWTTTYSNI-------------------------- 136
MFG S SQ TL++P L ++IA+W T + +
Sbjct: 326 SMFGPSVSSQITLSMPPGLAVTRIALWATVLTPVTKYALEFAPFAIQLERHLPAAMSPRA 385
Query: 137 -VMLR----XXXXXXXXXXXXXXPFFGLVMSLVGSFLTMFVAYILPCACFLAILRRTVTW 191
++R P+F V+SL GS +++ ++ I PCA +L I V+
Sbjct: 386 RTLVRGGVGSAALLLILALALSVPYFQYVLSLTGSLVSVAISIIFPCAFYLKIRWGRVSR 445
Query: 192 YQVLLCVFIIVVGLCCAGVGTYSSLSKIIQNYK 224
V L +I G+ A VGT SS + ++Q+ +
Sbjct: 446 PAVALNAAMIAAGVVLAVVGTASSATSLVQSIQ 478
>Os01g0585900
Length = 247
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 36/172 (20%)
Query: 49 IPIAVGLYGYCY-SGHGVFPNIYSSMKKRSQFPAVIFTCIALSTVLFAGAAIMGYIMFGE 107
+P + LY + Y GHGVFP ++S MK + FP V+ L ++ +A ++ Y+++GE
Sbjct: 73 LPTTLSLYFFIYFIGHGVFPTVHSLMKSKKDFPKVLLISSVLCSLNYAVTTLLRYLIYGE 132
Query: 108 STESQFTLNLPSNLVASKIAVWTTTYS--------------------------------- 134
++Q TLNLPS + ++I + TT S
Sbjct: 133 DVQAQVTLNLPSGKLYTRITILTTLISLLEKYGLEIQLIATVIKEKLSLTTAAATDAENN 192
Query: 135 --NIVMLRXXXXXXXXXXXXXXPFFGLVMSLVGSFLTMFVAYILPCACFLAI 184
V+ PFF +MS GS L + +A + PC +L I
Sbjct: 193 RQTRVLTSTAVVVSTVVLACTVPFFSYLMSFNGSSLNVTIAVLFPCLSYLKI 244
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.142 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,880,183
Number of extensions: 197466
Number of successful extensions: 748
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 12
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 154 (63.9 bits)