Os01g0597400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid/polyamine transporter II family protein.
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Os01g0597400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid/polyamine transporter II family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 507.24 | 1.06 | 3.57 | -0.0273 | 0.46 | 4.08 | 0.077 | 4.47 | -0.0865 | 16 | 19.96 | 347 | -- | -- |
| 510.53 | 1.05 | 3.52 | -0.0844 | 0.353 | 2.11 | 0.219 | -- | -0.0741 | 15.2 | 20.97 | 423 | -- | -- |
| 507.23 | 1.05 | 3.57 | -0.0188 | 0.466 | 4.21 | -- | 4.71 | -0.0866 | 16 | 19.9 | 339 | -- | -- |
| 508.49 | 1.05 | 3.51 | 0.04 | 0.388 | 1.96 | -- | -- | -0.00184 | 17 | 21.49 | 559 | -- | -- |
| 518.24 | 1.06 | 3.55 | -0.0704 | -- | 3.83 | -- | 3.92 | -0.1 | -- | 19.84 | 358 | -- | -- |
| 541.85 | 1.09 | 3.56 | -0.411 | 0.36 | -- | 0.0904 | -- | -0.24 | 15.4 | -- | -- | -- | -- |
| 541.87 | 1.09 | 3.56 | -0.409 | 0.36 | -- | -- | -- | -0.239 | 15.5 | -- | -- | -- | -- |
| 516.38 | 1.06 | 3.51 | 0.00836 | -- | 1.84 | -- | -- | -0.0409 | -- | 21.4 | 611 | -- | -- |
| 508.41 | 1.05 | 3.51 | -- | 0.398 | 1.92 | -- | -- | -0.0304 | 16.8 | 21.4 | 546 | -- | -- |
| 549.16 | 1.1 | 3.56 | -0.425 | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
| 546.29 | 1.09 | 3.55 | -- | 0.369 | -- | -- | -- | -0.194 | 15.5 | -- | -- | -- | -- |
| 516.38 | 1.06 | 3.51 | -- | -- | 1.84 | -- | -- | -0.041 | -- | 21.4 | 613 | -- | -- |
| 553.91 | 1.1 | 3.55 | -- | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 498.29 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 3 | 499.17 | temperature | 20 | 270 | < th | dose dependent | sin | 23 | NA |
| 11 | 501.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 12 | 501.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 12 |
| 29 | 502.92 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 11 |
| 31 | 502.94 | temperature | 20 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 32 | 502.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 37 | 503.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 7 |
| 39 | 503.23 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 41 | 503.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 44 | 503.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 5 |
| 94 | 504.38 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 135 | 505.22 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 157 | 505.53 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 10 |
| 177 | 505.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 194 | 505.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 196 | 505.99 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 2 |
| 207 | 506.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 361 | 507.88 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 19 |
| 434 | 508.53 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 464 | 508.77 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 478 | 508.92 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 558 | 509.50 | humidity | 90 | 720 | > th | dose dependent | rect. | 6 | 8 |
| 645 | 510.13 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 5 |
| 646 | 510.13 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 22 |
| 664 | 510.22 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 9 |
| 666 | 510.23 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 754 | 510.68 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 18 |
| 795 | 510.94 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 18 |
| 822 | 511.09 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 852 | 511.25 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 871 | 511.34 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 904 | 511.49 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 922 | 511.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 929 | 511.64 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 960 | 511.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 981 | 511.88 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 1000 | 512.00 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 6 |