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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0597600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid/polyamine transporter II family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.76 (0.165) R2 : 0.277
β1 : 3.29 (0.665) R2dD : 0.162 R2D : -0.519
β2 : 1.07 (0.245) R2dC : 0.0397 R2C : -0.273
β3 : -13.1 (1.51) R2dE : 1.89 R2E : -2.28
β4 : 4.51 (0.89) R2dD*C : 0.048 R2D*C : -0.271
β5 : -39.2 (3.99) R2dD*E : 1.88 R2D*E : -0.908
γ1 : 1.53 (0.23) R2dN8 : 0.133 R2N8 : -0.335
σ : 1.71
deviance : 1324.18
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_____
C
peak time of C : 0.594
E
wheather : radiation
threshold : 10.71
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19
open length of G : 10

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1324.18 1.71 6.76 3.29 1.07 -13.1 4.51 -39.2 1.53 0.594 10.71 4320 19 10
1554.91 1.85 5.45 -0.597 1.69 -1.39 1.23 -- 1.49 0.807 2.401 4329 19.3 10
1385.31 1.73 6.71 3.44 0.854 -13 -- -38.3 1.57 0.576 9.482 4320 19 10.1
1561.29 1.85 5.46 -0.643 1.69 -1.4 -- -- 1.48 0.777 2.401 4329 19.3 10
1362.44 1.72 6.76 3.5 -- -12.8 -- -38.1 1.55 -- 10.37 4319 19 10.1
1603.46 1.88 5.42 -0.582 0.144 -- 1.45 -- 1.55 2.83 -- -- -- --
1610.12 1.88 5.42 -0.617 0.189 -- -- -- 1.54 5.02 -- -- -- --
1414.09 1.75 5.45 0.288 -- -2.75 -- -- 1.47 -- 1.069 41762 19.2 9.91
1572.17 1.86 5.44 -- 1.67 -1.38 -- -- 1.55 0.763 2.401 4329 19.3 10
1612 1.88 5.42 -0.61 -- -- -- -- 1.54 -- -- -- -- --
1620.16 1.88 5.4 -- 0.179 -- -- -- 1.61 5.13 -- -- -- --
1408.6 1.75 5.46 -- -- -2.75 -- -- 1.46 -- 1.027 44655 19.2 9.91
1621.83 1.88 5.41 -- -- -- -- -- 1.61 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1348.61 radiation 20 14400 < th dose dependent rect. 19 10
3 1349.94 wind 3 43200 > th dose independent rect. 12 1
4 1350.94 wind 3 43200 < th dose independent rect. 12 1
5 1353.99 wind 3 43200 > th dose independent rect. 11 3
8 1355.22 wind 5 43200 < th dose dependent rect. 12 1
11 1357.47 humidity 90 43200 < th dose independent rect. 8 1
14 1358.55 wind 5 43200 < th dose dependent rect. 11 3
18 1359.44 humidity 90 43200 > th dose independent rect. 8 1
23 1362.04 radiation 1 4320 > th dose independent rect. 18 13
32 1364.42 radiation 30 14400 < th dose independent rect. 2 5
33 1364.44 radiation 1 14400 < th dose independent rect. 18 14
45 1365.60 wind 7 43200 < th dose dependent rect. 8 9
50 1365.98 wind 1 43200 > th dose dependent rect. 8 9
54 1366.24 radiation 1 43200 > th dose independent rect. 18 11
55 1366.28 wind 1 43200 > th dose dependent rect. 9 7
68 1366.75 atmosphere 1015 43200 < th dose independent rect. 3 1
85 1367.74 radiation 20 14400 > th dose dependent rect. 6 1
98 1367.82 radiation 10 14400 < th dose dependent rect. 1 4
106 1368.20 atmosphere 1015 43200 < th dose independent rect. 18 1
108 1368.30 radiation 30 14400 < th dose independent rect. 18 13
114 1368.52 wind 1 43200 > th dose dependent rect. 12 1
117 1368.56 wind 1 43200 > th dose dependent sin 23 NA
118 1368.63 wind 7 43200 < th dose dependent sin 23 NA
128 1368.96 radiation 1 14400 > th dose independent rect. 5 3
131 1369.08 atmosphere 1015 43200 > th dose dependent rect. 24 2
135 1369.14 radiation 1 14400 < th dose independent rect. 5 3
139 1369.20 wind 7 43200 < th dose independent rect. 9 1
165 1369.70 radiation 30 14400 < th dose independent rect. 6 1
172 1369.81 atmosphere 1015 43200 > th dose independent rect. 15 1
185 1369.89 atmosphere 1015 43200 > th dose independent rect. 4 1
195 1370.09 wind 7 43200 > th dose independent rect. 9 1
201 1370.19 wind 1 43200 > th dose dependent rect. 8 13
206 1370.25 atmosphere 1015 43200 < th dose independent rect. 11 3
209 1370.29 wind 1 43200 > th dose dependent rect. 6 15
221 1370.41 wind 7 43200 < th dose dependent rect. 8 13
222 1370.42 atmosphere 1015 43200 > th dose independent rect. 11 3
236 1370.62 radiation 1 14400 > th dose independent rect. 18 20
238 1370.64 radiation 40 14400 < th dose independent rect. 15 1
242 1370.67 wind 5 43200 < th dose independent rect. 4 13
244 1370.69 radiation 30 14400 < th dose independent rect. 22 9
247 1370.74 wind 5 43200 < th dose independent rect. 6 11
257 1370.83 wind 1 43200 > th dose dependent rect. 8 17
259 1370.86 atmosphere 1015 43200 < th dose independent rect. 10 6
260 1370.86 radiation 1 14400 > th dose independent rect. 18 18
265 1370.89 wind 5 43200 < th dose independent rect. 2 17
270 1370.91 wind 5 43200 < th dose independent rect. 24 20
272 1370.91 wind 7 43200 < th dose dependent rect. 8 17
278 1370.94 atmosphere 1015 43200 > th dose independent rect. 2 4
293 1371.04 atmosphere 1015 43200 > th dose independent rect. 10 5
329 1371.21 wind 3 43200 > th dose dependent rect. 24 20
340 1371.28 radiation 40 14400 < th dose independent rect. 15 14
387 1371.58 wind 5 43200 < th dose independent rect. 12 19
395 1371.62 wind 5 43200 > th dose independent rect. 4 13
400 1371.64 atmosphere 1015 43200 < th dose independent rect. 1 17
413 1371.70 atmosphere 1015 43200 > th dose independent rect. 1 18
421 1371.75 radiation 1 14400 < th dose independent rect. 18 18
431 1371.80 radiation 1 14400 < th dose independent rect. 18 20
435 1371.82 wind 5 43200 > th dose independent rect. 6 11
453 1371.93 radiation 1 14400 < th dose independent rect. 21 11
456 1371.93 wind 3 43200 > th dose dependent rect. 11 20
498 1372.08 wind 5 43200 > th dose independent rect. 24 19
511 1372.14 humidity 80 43200 > th dose dependent rect. 8 3
521 1372.18 wind 5 43200 > th dose independent rect. 2 17
542 1372.26 wind 9 43200 < th dose dependent rect. 9 20
546 1372.27 wind 5 43200 > th dose independent rect. 24 17
636 1372.63 radiation 30 14400 > th dose dependent rect. 16 16
678 1372.78 wind 5 43200 > th dose independent rect. 12 19
683 1372.80 wind 5 43200 < th dose independent sin 0 NA
702 1372.86 radiation 1 43200 < th dose independent rect. 18 11
724 1372.93 radiation 40 14400 < th dose independent rect. 15 8
754 1373.06 humidity 90 43200 > th dose dependent rect. 8 1
872 1373.54 atmosphere 1015 43200 > th dose independent sin 2 NA
876 1373.56 atmosphere 1015 43200 < th dose independent sin 2 NA
879 1373.59 radiation 1 4320 < th dose dependent rect. 4 1