Os06g0228500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid/polyamine transporter II family protein.
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Os06g0228500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid/polyamine transporter II family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 258.98 | 0.756 | 11.4 | -0.239 | 1.02 | 0.563 | -9.03 | 17 | 0.548 | 6.86 | 0.5455 | 737 | -- | -- |
| 299.49 | 0.812 | 11.3 | 0.25 | 1.55 | -0.809 | 5.12 | -- | 0.75 | 4.06 | 0.5455 | 737 | -- | -- |
| 268.89 | 0.764 | 11.4 | -0.741 | 1.42 | -0.193 | -- | 9.97 | 0.448 | 6.17 | 0.6285 | 1932 | -- | -- |
| 364.98 | 0.89 | 11.2 | 0.0643 | 1.52 | 0.511 | -- | -- | 0.932 | 6.55 | 89.07 | 18243 | -- | -- |
| 317.1 | 0.829 | 11.4 | -0.383 | -- | 2.16 | -- | 10.8 | 0.699 | -- | 0.3657 | 2119 | -- | -- |
| 338.36 | 0.862 | 11.3 | 0.216 | 1.46 | -- | 4.59 | -- | 0.755 | 5.48 | -- | -- | -- | -- |
| 376.24 | 0.908 | 11.3 | 0.244 | 1.58 | -- | -- | -- | 0.739 | 6.66 | -- | -- | -- | -- |
| 387.22 | 0.916 | 11.3 | 0.0114 | -- | 1.88 | -- | -- | 0.75 | -- | 9.986 | 791 | -- | -- |
| 364.77 | 0.89 | 11.2 | -- | 1.57 | 0.542 | -- | -- | 0.898 | 6.54 | 70 | 19834 | -- | -- |
| 506.32 | 1.05 | 11.3 | 0.281 | -- | -- | -- | -- | 0.771 | -- | -- | -- | -- | -- |
| 377.8 | 0.909 | 11.3 | -- | 1.58 | -- | -- | -- | 0.712 | 6.65 | -- | -- | -- | -- |
| 386.44 | 0.916 | 11.3 | -- | -- | 1.98 | -- | -- | 0.781 | -- | 10 | 805 | -- | -- |
| 508.4 | 1.05 | 11.3 | -- | -- | -- | -- | -- | 0.74 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 255.35 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 2 | 256.99 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 21 |
| 3 | 257.92 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 8 | 259.46 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 11 | 260.23 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 23 |
| 12 | 260.50 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 23 |
| 13 | 260.54 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 16 | 260.76 | radiation | 1.0 | 720 | < th | dose dependent | no | NA | NA |
| 17 | 261.02 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 20 | 261.26 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 23 | 261.47 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 28 | 261.83 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 4 | 17 |
| 30 | 261.92 | radiation | 1.0 | 720 | > th | dose independent | sin | 0 | NA |
| 32 | 262.01 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 23 |
| 36 | 262.23 | radiation | 1.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 41 | 262.53 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 21 |
| 45 | 262.62 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 20 |
| 49 | 262.79 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 62 | 263.63 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 64 | 263.77 | radiation | 1.0 | 720 | > th | dose independent | rect. | 5 | 14 |
| 75 | 263.85 | radiation | 1.0 | 720 | > th | dose independent | no | NA | NA |
| 76 | 263.85 | radiation | 1.0 | 720 | > th | dose independent | rect. | 5 | 11 |
| 137 | 264.20 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 13 |
| 143 | 264.39 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 4 | 12 |
| 146 | 264.47 | temperature | 15.0 | 720 | > th | dose independent | rect. | 22 | 21 |
| 152 | 264.63 | temperature | 15.0 | 720 | > th | dose independent | rect. | 18 | 13 |
| 173 | 265.45 | radiation | 1.0 | 720 | < th | dose independent | rect. | 12 | 23 |
| 180 | 265.55 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 11 |
| 181 | 265.57 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 16 |
| 184 | 265.62 | radiation | 1.0 | 720 | < th | dose independent | no | NA | NA |
| 204 | 265.91 | temperature | 15.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 220 | 266.07 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 8 |
| 221 | 266.12 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 4 | 21 |
| 237 | 266.53 | radiation | 1.0 | 720 | < th | dose independent | sin | 23 | NA |
| 239 | 266.53 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 15 |
| 248 | 266.68 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 23 |
| 295 | 267.19 | radiation | 1.0 | 720 | > th | dose independent | rect. | 12 | 23 |
| 306 | 267.42 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 23 |
| 328 | 267.58 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 372 | 268.43 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 12 |
| 375 | 268.49 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 394 | 268.74 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 403 | 268.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 9 |
| 409 | 268.92 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 570 | 270.58 | temperature | 15.0 | 720 | > th | dose independent | rect. | 13 | 17 |
| 585 | 270.75 | temperature | 15.0 | 720 | > th | dose independent | rect. | 22 | 15 |
| 648 | 271.43 | humidity | 90.0 | 720 | < th | dose independent | rect. | 8 | 7 |
| 671 | 271.61 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 20 |
| 676 | 271.66 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 737 | 272.12 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 16 |
| 746 | 272.17 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 793 | 272.48 | radiation | 1.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 799 | 272.54 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 16 | 22 |
| 805 | 272.60 | temperature | 15.0 | 720 | > th | dose independent | rect. | 8 | 8 |
| 825 | 272.73 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 844 | 272.90 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 852 | 272.96 | precipitation | 0.1 | 720 | < th | dose independent | sin | 1 | NA |
| 853 | 272.96 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 1 | NA |
| 901 | 273.29 | humidity | 70.0 | 10 | > th | dose dependent | no | NA | NA |
| 908 | 273.34 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 23 | 18 |
| 914 | 273.36 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 920 | 273.39 | temperature | 15.0 | 720 | > th | dose independent | sin | 1 | NA |
| 942 | 273.54 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 943 | 273.55 | humidity | 90.0 | 10 | > th | dose independent | rect. | 8 | 22 |
| 958 | 273.60 | humidity | 90.0 | 10 | > th | dose independent | rect. | 11 | 19 |
| 968 | 273.64 | temperature | 15.0 | 720 | > th | dose independent | rect. | 22 | 13 |