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Os04g0201500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid/polyamine transporter II family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.052) R2 : 0.844
β1 : 1.87 (0.3) R2dD : 0.0547 R2D : 0.237
β2 : 2.52 (0.108) R2dC : 0.193 R2C : 0.25
β3 : 2.63 (0.144) R2dE : 0.167 R2E : 0.313
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.19 (0.791) R2dD*E : 0.146 R2D*E : 0.325
γ1 : -0.203 (0.122) R2dN8 : 0.0027 R2N8 : -0.0168
σ : 0.764
deviance : 269.42
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C
peak time of C : 5.4
E
wheather : temperature
threshold : 19
memory length : 4748
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.57
open length of G : 0.76

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
262.92 0.762 10.2 1.87 2.54 2.65 -1.97 -8.25 -0.216 5.48 19.11 4745 4.03 1.95
315.55 0.827 10 2.83 2.53 3.37 -1.85 -- -0.157 5.79 7.667 26362 3.63 1.92
269.42 0.764 10.2 1.87 2.52 2.63 -- -8.19 -0.203 5.4 19 4748 4.57 0.76
322.04 0.836 9.96 2.75 2.62 3.56 -- -- 0.00033 5.5 5.799 19139 4.11 2.05
577.27 1.12 10.2 1.76 -- 3.41 -- -7.84 -0.271 -- 18.4 4728 4.2 0.116
470.18 1.02 9.71 5.35 2.88 -- -2.5 -- 1.19 5.75 -- -- -- --
485.24 1.03 9.71 5.33 2.86 -- -- -- 1.2 5.67 -- -- -- --
443.66 0.981 10.2 1.99 -- 6.09 -- -- -0.546 -- -30.29 19347 0.148 2.72
351.02 0.873 10.2 -- 2.83 4.7 -- -- -0.737 5.79 1.821 47520 2.51 1.92
910 1.41 9.75 5.42 -- -- -- -- 1.27 -- -- -- -- --
1234.81 1.64 9.84 -- 2.95 -- -- -- 0.605 5.59 -- -- -- --
498.78 1.04 10.2 -- -- 6.88 -- -- -0.858 -- -27.34 19324 0.283 2.91
1686.04 1.92 9.89 -- -- -- -- -- 0.665 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 241.58 radiation 1 14400 > th dose independent rect. 8 4
3 242.78 radiation 1 14400 < th dose independent rect. 8 5
6 244.72 temperature 15 43200 > th dose independent rect. 3 1
8 245.25 temperature 15 43200 < th dose independent rect. 2 1
11 245.68 radiation 1 43200 < th dose dependent rect. 9 1
12 245.78 radiation 40 43200 < th dose independent rect. 15 4
18 246.08 radiation 40 43200 < th dose independent rect. 15 9
21 246.15 radiation 40 43200 < th dose independent rect. 15 17
25 246.46 radiation 40 43200 < th dose independent rect. 15 14
27 246.51 radiation 40 43200 < th dose independent rect. 15 11
33 246.64 radiation 40 43200 < th dose independent rect. 7 1
34 246.70 temperature 15 43200 < th dose independent rect. 24 7
41 246.95 radiation 40 43200 < th dose independent rect. 1 7
54 247.36 temperature 15 43200 < th dose independent rect. 24 11
63 247.62 radiation 40 43200 < th dose independent rect. 21 11
64 247.64 radiation 40 43200 < th dose independent rect. 23 9
75 247.84 radiation 40 43200 < th dose independent rect. 18 14
86 247.99 radiation 20 43200 < th dose independent rect. 17 2
101 248.34 radiation 10 43200 < th dose independent rect. 3 2
111 248.44 radiation 10 43200 < th dose independent rect. 1 4
113 248.47 temperature 15 43200 > th dose independent rect. 1 11
116 248.49 temperature 15 43200 < th dose independent sin 7 NA
125 248.58 radiation 1 43200 > th dose independent rect. 4 1
135 248.58 radiation 1 43200 > th dose dependent rect. 4 1
156 248.75 humidity 80 43200 > th dose independent rect. 13 1
160 248.78 temperature 15 43200 > th dose independent rect. 22 7
208 249.18 temperature 15 43200 > th dose independent sin 7 NA
225 249.31 radiation 20 43200 < th dose independent rect. 17 7
304 249.93 radiation 20 43200 < th dose independent rect. 17 13
390 250.52 radiation 30 43200 > th dose dependent rect. 7 1
420 250.66 humidity 80 43200 < th dose independent rect. 13 1
451 250.89 temperature 15 43200 > th dose independent rect. 9 21
456 250.91 temperature 15 43200 < th dose independent rect. 5 1
485 251.08 radiation 10 43200 < th dose independent rect. 23 6
486 251.08 radiation 20 43200 < th dose independent rect. 17 9
536 251.28 temperature 15 43200 < th dose independent rect. 9 21
598 251.55 temperature 15 43200 > th dose independent no NA NA
693 252.26 temperature 15 43200 < th dose independent no NA NA
740 252.89 humidity 90 43200 > th dose dependent rect. 19 17
746 252.91 humidity 90 43200 > th dose dependent rect. 19 20
753 252.97 temperature 15 43200 < th dose independent rect. 4 23
782 253.25 humidity 90 43200 > th dose dependent rect. 1 14
790 253.29 radiation 20 43200 < th dose dependent rect. 1 4
795 253.35 humidity 90 43200 > th dose dependent rect. 1 11
799 253.40 radiation 30 43200 < th dose dependent rect. 3 2
824 253.55 humidity 90 43200 > th dose dependent rect. 8 22
825 253.56 humidity 90 43200 > th dose dependent sin 6 NA
935 254.35 humidity 90 43200 > th dose dependent rect. 13 22
986 254.88 temperature 15 43200 > th dose independent rect. 9 2
989 254.88 humidity 90 43200 > th dose dependent rect. 23 23
999 255.01 temperature 15 43200 < th dose independent rect. 9 2