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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0460300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid/polyamine transporter II family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.13 (0.0631) R2 : 0.731
β1 : -0.855 (0.281) R2dD : 0.00915 R2D : 0.0462
β2 : 2.91 (0.154) R2dC : 0.211 R2C : 0.198
β3 : 5.77 (0.328) R2dE : 0.323 R2E : 0.455
β4 : 3.17 (0.656) R2dD*C : 0.014 R2D*C : 0.000981
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.16 (0.15) R2dN8 : 0.0638 R2N8 : 0.122
σ : 1.14
deviance : 595.54
__
_____
C
peak time of C : 8.14
E
wheather : temperature
threshold : 22.7
memory length : 5113
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
595.47 1.15 6.15 -0.955 2.9 5.85 3.18 0.583 -1.17 8.13 22.86 5125 -- --
595.54 1.14 6.13 -0.855 2.91 5.77 3.17 -- -1.16 8.14 22.7 5113 -- --
625.08 1.16 6.19 -0.904 2.9 6.2 -- 1.51 -1.22 8.19 22.51 5104 -- --
626.34 1.17 6.14 -0.784 2.9 5.74 -- -- -1.17 8.18 22.74 5106 -- --
1085.89 1.53 6.25 -0.837 -- 6.28 -- 1.5 -1.15 -- 22.61 5083 -- --
994.17 1.48 6.43 -3.85 2.97 -- 3.22 -- -2.48 8.3 -- -- -- --
1026.29 1.5 6.43 -3.75 2.96 -- -- -- -2.48 8.36 -- -- -- --
1087.99 1.54 6.19 -0.67 -- 5.91 -- -- -1.08 -- 22.8 5083 -- --
635.87 1.17 6.1 -- 2.9 6.4 -- -- -1.01 8.14 22.6 5271 -- --
1513.67 1.82 6.51 -3.74 -- -- -- -- -2.45 -- -- -- -- --
1397.43 1.75 6.33 -- 2.95 -- -- -- -2.06 8.45 -- -- -- --
1095.63 1.54 6.17 -- -- 6.4 -- -- -0.943 -- 22.68 5095 -- --
1881.66 2.02 6.41 -- -- -- -- -- -2.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 504.44 wind 3 43200 < th dose dependent rect. 20 3
6 521.36 wind 1 14400 < th dose dependent rect. 21 7
12 526.89 wind 3 43200 < th dose independent rect. 20 2
18 528.10 wind 3 43200 > th dose independent rect. 20 2
24 530.72 wind 1 43200 > th dose independent rect. 21 5
30 535.08 radiation 10 43200 < th dose independent rect. 7 1
33 535.57 wind 9 43200 > th dose independent rect. 9 10
34 535.60 wind 7 43200 > th dose dependent rect. 9 9
41 536.69 wind 1 43200 < th dose independent rect. 21 5
44 537.36 wind 1 43200 < th dose independent rect. 23 3
46 538.41 wind 9 43200 > th dose independent sin 20 NA
48 538.62 wind 9 43200 > th dose independent rect. 9 14
49 538.79 wind 9 43200 > th dose independent rect. 10 20
51 538.90 wind 9 43200 < th dose independent rect. 9 10
65 540.12 radiation 10 43200 < th dose independent rect. 20 12
66 540.13 radiation 10 43200 < th dose independent rect. 22 10
69 540.15 radiation 10 43200 < th dose independent rect. 24 8
76 540.75 radiation 20 43200 < th dose independent rect. 13 1
77 540.83 wind 9 43200 < th dose independent sin 21 NA
79 541.08 wind 7 43200 > th dose dependent sin 20 NA
87 542.44 wind 7 43200 > th dose dependent rect. 10 14
97 543.09 wind 9 43200 < th dose independent rect. 9 14
101 543.26 wind 9 43200 < th dose independent rect. 10 21
131 544.58 wind 9 43200 < th dose independent rect. 9 16
150 546.16 radiation 10 43200 < th dose independent rect. 16 17
157 546.67 radiation 1 43200 > th dose dependent rect. 5 1
181 547.86 radiation 10 43200 < th dose independent sin 11 NA
191 548.59 wind 1 43200 < th dose independent rect. 19 7
207 548.95 wind 1 43200 > th dose dependent rect. 21 2
224 549.31 radiation 10 43200 < th dose independent rect. 6 11
228 549.42 humidity 60 43200 < th dose independent rect. 21 13
237 549.75 wind 3 43200 < th dose independent rect. 11 1
239 549.77 wind 9 43200 < th dose independent rect. 13 18
248 550.09 radiation 10 43200 < th dose independent rect. 22 19
260 550.22 humidity 50 43200 > th dose independent rect. 19 21
268 550.68 wind 7 43200 > th dose independent rect. 7 12
270 550.82 radiation 10 43200 < th dose independent rect. 12 21
271 550.84 humidity 50 43200 < th dose independent rect. 13 2
276 550.88 radiation 10 43200 < th dose independent rect. 16 22
284 551.12 humidity 50 43200 < th dose independent rect. 19 21
296 551.24 wind 3 43200 > th dose independent rect. 11 1
307 551.36 humidity 60 43200 < th dose independent rect. 2 8
331 551.69 radiation 30 43200 < th dose independent rect. 9 5
378 552.10 radiation 10 43200 < th dose independent rect. 6 19
379 552.11 radiation 10 43200 < th dose independent rect. 6 15
380 552.11 radiation 10 43200 < th dose independent rect. 6 17
391 552.17 radiation 30 43200 < th dose independent rect. 22 16
392 552.17 radiation 30 43200 < th dose independent rect. 20 18
396 552.18 radiation 30 43200 < th dose independent rect. 24 14
399 552.18 radiation 10 43200 < th dose independent rect. 10 23
400 552.19 radiation 30 43200 < th dose independent rect. 6 8
441 552.45 radiation 30 43200 < th dose independent rect. 15 23
447 552.60 humidity 50 43200 > th dose independent rect. 13 2
455 552.76 radiation 10 43200 < th dose independent no NA NA
457 552.76 radiation 10 43200 < th dose independent rect. 3 20
470 552.76 radiation 10 43200 < th dose independent rect. 24 23
506 552.83 humidity 80 43200 > th dose independent rect. 19 5
520 552.94 radiation 30 43200 < th dose independent sin 4 NA
552 553.25 humidity 90 43200 < th dose dependent rect. 19 1
590 553.35 humidity 50 43200 > th dose independent rect. 2 14
631 553.50 humidity 50 43200 < th dose independent rect. 3 13
655 553.56 radiation 20 43200 > th dose dependent rect. 13 1
676 553.80 humidity 80 43200 < th dose independent rect. 18 6
695 554.07 wind 7 43200 < th dose independent rect. 17 1
696 554.10 wind 7 43200 < th dose independent rect. 15 4
707 554.26 humidity 80 43200 < th dose independent rect. 19 4
718 554.28 humidity 50 43200 < th dose dependent rect. 13 2
807 554.79 radiation 40 43200 > th dose dependent rect. 12 2
827 554.82 humidity 50 43200 < th dose independent rect. 11 21
834 554.85 radiation 30 43200 < th dose independent no NA NA
841 554.85 radiation 30 43200 < th dose independent rect. 5 18
846 554.85 radiation 30 43200 < th dose independent rect. 3 20
854 554.85 radiation 30 43200 < th dose independent rect. 24 21
912 554.90 humidity 60 43200 < th dose independent rect. 8 2
915 554.91 humidity 70 43200 > th dose independent rect. 18 1
926 554.92 wind 1 43200 < th dose dependent rect. 10 18