BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0860900 Os03g0860900|AK111575
(743 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0860900 Lissencephaly type-1-like homology motif domai... 1342 0.0
Os02g0813800 Similar to STYLOSA protein 684 0.0
Os01g0177100 Similar to STYLOSA protein 340 3e-93
Os01g0607400 Similar to STYLOSA protein 313 4e-85
Os04g0510200 Similar to STYLOSA protein 263 5e-70
Os01g0607600 Similar to Transcriptional corepressor LEUNIG 226 3e-59
Os01g0780400 WD40-like domain containing protein 84 4e-16
Os01g0951000 WD40-like domain containing protein 72 2e-12
Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding ... 71 4e-12
Os10g0104500 Similar to Notchless-related 70 4e-12
Os11g0594200 Similar to Notchless gene homolog 70 6e-12
AK110077 68 2e-11
Os07g0405100 Similar to F-box-like/WD-repeat protein ebi 67 4e-11
Os03g0685600 WD40-like domain containing protein 66 1e-10
>Os03g0860900 Lissencephaly type-1-like homology motif domain containing protein
Length = 743
Score = 1342 bits (3473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 658/743 (88%), Positives = 658/743 (88%)
Query: 1 MARSNWEADKMLDVYIYDYLVKRNMHNTAKAFMTEGKVATDPVAIDAPGGFLFEWWSIFW 60
MARSNWEADKMLDVYIYDYLVKRNMHNTAKAFMTEGKVATDPVAIDAPGGFLFEWWSIFW
Sbjct: 1 MARSNWEADKMLDVYIYDYLVKRNMHNTAKAFMTEGKVATDPVAIDAPGGFLFEWWSIFW 60
Query: 61 DIFDARTRDKXXXXXXXXXXXXXXDIKSREXXXXXXXXXXXXXXXXXXXDPPLNAAMDAL 120
DIFDARTRDK DIKSRE DPPLNAAMDAL
Sbjct: 61 DIFDARTRDKPPQPQPQPPPPIPIDIKSREQQMRLQLLQQQQNAHQQRRDPPLNAAMDAL 120
Query: 121 NSDVSAVLASKMMQDRMRNPNPTDSDASHQLLDANRIALLKPATNQTGQLVQGASVNMSA 180
NSDVSAVLASKMMQDRMRNPNPTDSDASHQLLDANRIALLKPATNQTGQLVQGASVNMSA
Sbjct: 121 NSDVSAVLASKMMQDRMRNPNPTDSDASHQLLDANRIALLKPATNQTGQLVQGASVNMSA 180
Query: 181 LQQIHSRNQQPDMKGDAAMSQRSMPTDPSTLYGSGMMQPKSGLVSTGLNQGVGSVPLKGW 240
LQQIHSRNQQPDMKGDAAMSQRSMPTDPSTLYGSGMMQPKSGLVSTGLNQGVGSVPLKGW
Sbjct: 181 LQQIHSRNQQPDMKGDAAMSQRSMPTDPSTLYGSGMMQPKSGLVSTGLNQGVGSVPLKGW 240
Query: 241 PLTVPGIDQLRSNLGVQKQLMASPNQFXXXXXXXXXXXXXXXXNDLARMGSPAPSGSPKV 300
PLTVPGIDQLRSNLGVQKQLMASPNQF NDLARMGSPAPSGSPKV
Sbjct: 241 PLTVPGIDQLRSNLGVQKQLMASPNQFQLLSPQQQLIAQAQSQNDLARMGSPAPSGSPKV 300
Query: 301 RPDESDYMMKLKMAQMQQPSGHRLMEXXXXXXXXXXNTRKRKPTSSGAANXXXXXXXXXX 360
RPDESDYMMKLKMAQMQQPSGHRLME NTRKRKPTSSGAAN
Sbjct: 301 RPDESDYMMKLKMAQMQQPSGHRLMELQQQQQQLQQNTRKRKPTSSGAANSTGTGNTVGP 360
Query: 361 XXXXXXXXXXXXXXXXVASNMNIVQKSSLICGADGTSGLASSSNQMDNLDSFVDFDENVD 420
VASNMNIVQKSSLICGADGTSGLASSSNQMDNLDSFVDFDENVD
Sbjct: 361 SPPSTPSTHTPGGGLPVASNMNIVQKSSLICGADGTSGLASSSNQMDNLDSFVDFDENVD 420
Query: 421 SFLSNDDGDGRDIFASLKKGSSEQDSLKGLSLSEFGNNRTSNNKVVCCHFSTDGKLLASA 480
SFLSNDDGDGRDIFASLKKGSSEQDSLKGLSLSEFGNNRTSNNKVVCCHFSTDGKLLASA
Sbjct: 421 SFLSNDDGDGRDIFASLKKGSSEQDSLKGLSLSEFGNNRTSNNKVVCCHFSTDGKLLASA 480
Query: 481 GHEKKVFLWNMDNLNMDTKIEEHTNFITDIRFKPNSTQLATSSSDGTVRLWNAIERTGAV 540
GHEKKVFLWNMDNLNMDTKIEEHTNFITDIRFKPNSTQLATSSSDGTVRLWNAIERTGAV
Sbjct: 481 GHEKKVFLWNMDNLNMDTKIEEHTNFITDIRFKPNSTQLATSSSDGTVRLWNAIERTGAV 540
Query: 541 QTFHGHSSHVTSVDFHPKSTEVLCSCDDNGEICFWKIGQSKVSRISRMKQGGTGRVRFQP 600
QTFHGHSSHVTSVDFHPKSTEVLCSCDDNGEICFWKIGQSKVSRISRMKQGGTGRVRFQP
Sbjct: 541 QTFHGHSSHVTSVDFHPKSTEVLCSCDDNGEICFWKIGQSKVSRISRMKQGGTGRVRFQP 600
Query: 601 QIGQLLAVATGSIVNIVDVEKEASLHSLPKVHTNEVNCICWDEKGERVASVSQDTVKVWS 660
QIGQLLAVATGSIVNIVDVEKEASLHSLPKVHTNEVNCICWDEKGERVASVSQDTVKVWS
Sbjct: 601 QIGQLLAVATGSIVNIVDVEKEASLHSLPKVHTNEVNCICWDEKGERVASVSQDTVKVWS 660
Query: 661 VASGACIHELRSHGNQYQSCIFHPRYPNVLIVGGYQTMELWSLSDNHRNTVQAHEGLIAA 720
VASGACIHELRSHGNQYQSCIFHPRYPNVLIVGGYQTMELWSLSDNHRNTVQAHEGLIAA
Sbjct: 661 VASGACIHELRSHGNQYQSCIFHPRYPNVLIVGGYQTMELWSLSDNHRNTVQAHEGLIAA 720
Query: 721 LAHSQFTGMIASASHDRSVKLWK 743
LAHSQFTGMIASASHDRSVKLWK
Sbjct: 721 LAHSQFTGMIASASHDRSVKLWK 743
>Os02g0813800 Similar to STYLOSA protein
Length = 802
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/813 (47%), Positives = 500/813 (61%), Gaps = 81/813 (9%)
Query: 1 MARSNWEADKMLDVYIYDYLVKRNMHNTAKAFMTEGKVATDPVAIDAPGGFLFEWWSIFW 60
MA+SNWEADKMLDVYIYDYL+KRN+ +TAKAFM EGKVA DPVAIDAPGGFLFEWWS+FW
Sbjct: 1 MAQSNWEADKMLDVYIYDYLLKRNLQSTAKAFMAEGKVAADPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFDARTRDKXXXXXXXXXXXXXXDIKSREXXXXXXXXXX-------XXXXXXXXXDPPL 113
DIF ART +K IK+RE P L
Sbjct: 61 DIFIARTNEKHSEVAAAYLEAQ--QIKAREHQQQMQMQQLQLIQHRHAQLQRTNASHPSL 118
Query: 114 NAAMDALNSD------VSAVLASKMMQDRMRNPNPTDSDASHQLLDANRIALLK-PATNQ 166
N ++ LNSD ++VLA+KM ++R+++P DS+ S QLLDA+R+ALLK ATN
Sbjct: 119 NGPINTLNSDGILGHSTASVLAAKMYEERLKHPQSLDSEGS-QLLDASRMALLKSAATNH 177
Query: 167 TGQLVQGASVNMSA-LQQIHSRNQQP-DMK--GDAAMSQRSMPTDPSTLYGSGMMQPKSG 222
GQLV G N+S LQQI SRNQQ D+K G+ ++QRS+P DPS+LYG G++QPK G
Sbjct: 178 AGQLVPGTPGNVSTTLQQIQSRNQQTMDIKSEGNMGVAQRSLPMDPSSLYGQGIIQPKPG 237
Query: 223 LVSTGLNQGVGSVPLKGWPLTVPGIDQLRSNLG--VQKQLMASPNQFXXXXXXXXXXXXX 280
L GLNQGV +PLKGWPLT GIDQLR NLG +QK +++ +QF
Sbjct: 238 LGGAGLNQGVSGLPLKGWPLT--GIDQLRPNLGAQMQKPFLSTQSQFQLMSPQQQQQFLA 295
Query: 281 XX-------------------XNDLARMG----------------SPAPSGSPKVRPDES 305
L R G SP S SPKVR D+
Sbjct: 296 QAQAQGNLSNSSNYGDLDPRRYTALTRGGLNGKDGQPAGTDGCISSPMQSSSPKVRSDQ- 354
Query: 306 DYMMKLKMAQMQQPSGHRLMEXXXXXXXXXX-------NTRKRKPTSSGAANXXXXXXXX 358
+Y++K++ QQP + + N ++++PTSSGAAN
Sbjct: 355 EYLIKVQQTSSQQPQEQQQQQSQQQQQQQSQQQQMQQSNRKRKQPTSSGAANSTGTGNTV 414
Query: 359 XXXXXXXXXXXXXXX---XXXVASNMNIVQKSSLICGADGTSGLASSSNQMDNLDSFVD- 414
+ NM V K+ ++ GADGT GLASSSNQMD+L+ F D
Sbjct: 415 GPSTNSPPSTPSTHTPGDGLGMPGNMRHVPKNLVMYGADGT-GLASSSNQMDDLEPFGDV 473
Query: 415 --FDENVDSFLSNDDGDGRDIFASLKKGSSEQD--SLKGLSLSEFGNNRTSNNKVVCCHF 470
++NV+SFL+NDDGD RDIFA+LK+ +E + + KG + +E RT+N+KVVCCHF
Sbjct: 474 GSLEDNVESFLANDDGDARDIFAALKRSPAEPNPAASKGFTFNEVNCLRTNNSKVVCCHF 533
Query: 471 STDGKLLASAGHEKKVFLWNMDNLNMDTKIEEHTNFITDIRFKPNSTQLATSSSDGTVRL 530
S+DGK+LASAGHEKK LWNMD EEH+ ITD+RF+PNS+QLATSS D T++L
Sbjct: 534 SSDGKILASAGHEKKAVLWNMDTFQSQYTSEEHSLIITDVRFRPNSSQLATSSFDRTIKL 593
Query: 531 WNAIERTGAVQTFHGHSSHVTSVDFHPKSTEVLCSCDDNGEICFWKIGQSKVSRISRMKQ 590
WNA + + TF GH+ VTS+DFHPK T++LCSCD NGEI +W + Q +S + MK
Sbjct: 594 WNAADPGFCLHTFVGHNVQVTSLDFHPKKTDLLCSCDGNGEIRYWNLTQ--LSCMRAMK- 650
Query: 591 GGTGRVRFQPQIGQLLAVATGSIVNIVDVEKEASLHSLPKVHTNEVNCICWDEKGERVAS 650
GGT +VRFQP GQ LA A ++V I DVE + ++L + H +V +CWD GE +AS
Sbjct: 651 GGTAQVRFQPNTGQFLAAAAETMVAIFDVETHSKKYTL-QGHNTDVQSVCWDSSGEYLAS 709
Query: 651 VSQDTVKVWSVASGACIHELRSHGNQYQSCIFHPRYPNVLIVGGYQTMELWSLSDNHRNT 710
VSQD VKVWS++SG CIHE+ S+GN++ SC+FHP Y N+L++GGYQ++ELW++ N T
Sbjct: 710 VSQDLVKVWSISSGECIHEVSSNGNKFHSCVFHPSYANLLVIGGYQSLELWNMVKNQSMT 769
Query: 711 VQAHEGLIAALAHSQFTGMIASASHDRSVKLWK 743
+QAHEGLIAALA S G +ASASHD SVKLWK
Sbjct: 770 IQAHEGLIAALAQSPVNGTVASASHDNSVKLWK 802
>Os01g0177100 Similar to STYLOSA protein
Length = 875
Score = 340 bits (871), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/366 (46%), Positives = 243/366 (66%), Gaps = 19/366 (5%)
Query: 384 VQKSSLICGADGTSGLASSSNQMDNLDSFVD---FDENVDSFLSNDDGDGRDIFASLKKG 440
+ K+ ++ G + S SNQ+ ++D FV+ +++VDSFLS+DD D RD
Sbjct: 523 LSKALVVYGTSTAGTMGSPSNQLADMDRFVEDGCLEDHVDSFLSHDDADRRD-------- 574
Query: 441 SSEQDSLKGLSLSEFGNNRTSNNKVVCCHFSTDGKLLASAGHEKKVFLWNMDNLNMDTKI 500
S +S KG E + + S NKVVCCHFS+DGKLLA+ GH+KKV LW+ + L + +
Sbjct: 575 GSRMESTKGFIFREVSSVQASTNKVVCCHFSSDGKLLATGGHDKKVVLWHAETLKQKSVL 634
Query: 501 EEHTNFITDIRFKPNSTQLATSSSDGTVRLWNAIERTGAVQTFHGHSSHVTSVDFHPKST 560
EEH+ ITD+RF P+ +LATSS D TVR+W+A + +++TF GHS+ V S+DFHP
Sbjct: 635 EEHSLLITDVRFSPSIPRLATSSFDKTVRVWDADNQGYSIRTFTGHSASVMSLDFHPNKD 694
Query: 561 EVLCSCDDNGEICFWKIGQSKVSRISRMKQGGTGRVRFQPQIGQLLAVATGSIVNIVDVE 620
+++CSCD + EI FW I + RI + GG+ ++RFQP+ G LAVA+ + V+I+DVE
Sbjct: 695 DLICSCDGDNEIRFWSINNGNIVRIFK---GGSSQLRFQPRHGGYLAVASENAVSILDVE 751
Query: 621 KEASLHSLPKVHTNEVNCICWDEKGERVASVSQDTVKVWSVASGA---CIHELRSHGNQY 677
+A L + HT V+ +CWD GE V SVS+DTVKVWSV +G+ C+ EL G+++
Sbjct: 752 TQACLRRF-EGHTKHVDSVCWDPSGEYVVSVSEDTVKVWSVNAGSDDRCVQELSCTGSKF 810
Query: 678 QSCIFHPRYPNVLIVGGYQTMELWSLSDNHRNTVQAHEGLIAALAHSQFTGMIASASHDR 737
SC FHP Y ++LI+G YQ++ELW +S+N T+ AH+ LI ALA S +G++AS SHD+
Sbjct: 811 HSCAFHPSYSSMLIIGCYQSLELWDMSENRTMTLAAHDSLITALASSS-SGLVASTSHDK 869
Query: 738 SVKLWK 743
VKLWK
Sbjct: 870 FVKLWK 875
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 59/67 (88%)
Query: 4 SNWEADKMLDVYIYDYLVKRNMHNTAKAFMTEGKVATDPVAIDAPGGFLFEWWSIFWDIF 63
S WEA+KMLDVYI+DYL+KRN+ +TAKAF EG V++DPVAIDAPGGFL EWWS+FWDIF
Sbjct: 9 SAWEAEKMLDVYIHDYLLKRNLQSTAKAFQAEGSVSSDPVAIDAPGGFLLEWWSVFWDIF 68
Query: 64 DARTRDK 70
ART +K
Sbjct: 69 IARTNEK 75
>Os01g0607400 Similar to STYLOSA protein
Length = 876
Score = 313 bits (801), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 161/366 (43%), Positives = 237/366 (64%), Gaps = 14/366 (3%)
Query: 386 KSSLICGADGTSGLASSSNQMDNLDSFVD---FDENVDSFLSNDDGDGRDIFASLKKGSS 442
K ++ G+DG L S +N + ++D ++ DENV+SFLS DD D RD SL +
Sbjct: 517 KPLVMFGSDGAGSLTSPANALADVDRLLEDGSLDENVESFLSQDDMDPRD---SLGR--- 570
Query: 443 EQDSLKGLSLSEFGNNRTSNNKVVCCHFSTDGKLLASAGHEKKVFLWNMD-NLNMDTKIE 501
D+ KG +E R S KV CCHFS+DGKLLA+ GH+KKV LW + L + +E
Sbjct: 571 SMDASKGFGFAEVAKARASATKVTCCHFSSDGKLLATGGHDKKVLLWCTEPALKPTSSLE 630
Query: 502 EHTNFITDIRFKPNSTQLATSSSDGTVRLWNAIERTGAVQTFHGHSSHVTSVDFHPKSTE 561
EH+ ITD+RF P+ ++LATSS D TVR+W+A + +++TF GHS+ V S+DFHP +
Sbjct: 631 EHSALITDVRFSPSMSRLATSSFDKTVRVWDADNTSYSLRTFTGHSASVMSLDFHPNKED 690
Query: 562 VLCSCDDNGEICFWKIGQSKVSRISRMKQGGTGRVRFQPQIGQLLAVATGSIVNIVDVEK 621
++CSCD +GE+ W I ++ +GG ++RFQPQ G+ LA A+ + I+D E
Sbjct: 691 MICSCDGDGEVRSWSINNGSCLTFVKVFKGGATQMRFQPQKGKYLAAASEKAIYILDGET 750
Query: 622 EASLHSLPKVHTNEVNCICWDEKGERVASVSQDTVKVWSVA---SGACIHELRSHGNQYQ 678
+ + + + HT ++ +CWD G+ +ASVS+D+V++WS A G ++EL GN++Q
Sbjct: 751 QLACRNPLQGHTKNIHSLCWDSTGDNLASVSEDSVRIWSFAPGHDGEFVNELSCSGNKFQ 810
Query: 679 SCIFHPRYPNVLIVGGYQTMELWSLSDNHRNTVQ-AHEGLIAALAHSQFTGMIASASHDR 737
SC+FHP YP +L++G Y+++ELW + + + TV AH+GL+AALA S TG +AS SHDR
Sbjct: 811 SCVFHPSYPYLLVIGCYESLELWDIREKNAMTVHSAHDGLVAALAASSATGKVASVSHDR 870
Query: 738 SVKLWK 743
VKLWK
Sbjct: 871 FVKLWK 876
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 63/70 (90%)
Query: 1 MARSNWEADKMLDVYIYDYLVKRNMHNTAKAFMTEGKVATDPVAIDAPGGFLFEWWSIFW 60
M+++NWEADKMLDVYIYDY +KRN+ TAKAF EGKV++DPVAIDAPGGFLFEWWS+FW
Sbjct: 1 MSQTNWEADKMLDVYIYDYFMKRNLQATAKAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFDARTRDK 70
DIF ART +K
Sbjct: 61 DIFIARTNEK 70
>Os04g0510200 Similar to STYLOSA protein
Length = 383
Score = 263 bits (671), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 150/287 (52%), Positives = 188/287 (65%), Gaps = 25/287 (8%)
Query: 1 MARSNWEADKMLDVYIYDYLVKRNMHNTAKAFMTEGKVATDPVAIDAPGGFLFEWWSIFW 60
MA+SNWEADKMLDVYIYDYL+KRN+ TAK+FM EGKV+ DPVAIDAPGGFLFEWWS+FW
Sbjct: 1 MAQSNWEADKMLDVYIYDYLLKRNLQATAKSFMAEGKVSADPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFDARTRDKXXXXXXXXXXXXXXDIKSRE-------XXXXXXXXXXXXXXXXXXXDPPL 113
DIF ART +K K+RE P L
Sbjct: 61 DIFIARTNEK--HSEIAAAYLEAQQTKAREHQQQMQMQQLQLIQQRHAQLQRTNATHPSL 118
Query: 114 NAAMDALNSD------VSAVLASKMMQDRMRNPNPTDSDASHQLLDANRIALLKPA-TNQ 166
N + LNSD ++VLA+KM ++R+++ +P DSD S QLLDA+R+ALLK A TN
Sbjct: 119 NGPISGLNSDGILGPSTASVLAAKMYEERLKHSHPMDSDGS-QLLDASRLALLKSASTNH 177
Query: 167 TGQLVQGASVNMS-ALQQIHSRNQQP-DMK--GDAAMSQRSMPTDPSTLYGSGMMQPKSG 222
+GQ V G ++S LQQI +RNQQ D+K G+ +++QRSMP DPS+LYG G++QPK G
Sbjct: 178 SGQSVPGTPGSVSTTLQQIQARNQQNIDIKSEGNMSVAQRSMPMDPSSLYGQGIIQPKPG 237
Query: 223 LVSTGLNQGVGSVPLKGWPLTVPGIDQLRSNLG--VQKQLMASPNQF 267
L LNQGV +PLKGWPLT GIDQLR NLG +QK +++ +QF
Sbjct: 238 LGGGVLNQGVSGLPLKGWPLT--GIDQLRPNLGGQMQKPFLSTQSQF 282
>Os01g0607600 Similar to Transcriptional corepressor LEUNIG
Length = 811
Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 187/351 (53%), Gaps = 49/351 (13%)
Query: 386 KSSLICGADGTSGLASSSNQMDNLDSFVD---FDENVDSFLSNDDGDGRDIFASLKKGSS 442
KS + G D T L S +N + ++D + DENV+SFLS +D D ++
Sbjct: 498 KSLSMFGYDDTKSLISPTNPLGDVDQLQEDGSLDENVESFLSQEDMDPQETMGHC----- 552
Query: 443 EQDSLKGLSLSEFGNNRTSNNKVVCCHFSTDGKLLASAGHEKKVFLWNMDNLNMDTKIEE 502
D+ KG E R S NKV CCHFS+DGKLLA+ GH+KKV LW D+LN+ EE
Sbjct: 553 -MDASKGFGFIEVAKARASTNKVDCCHFSSDGKLLATGGHDKKVVLWFTDDLNIKAIFEE 611
Query: 503 HTNFITDIRFKPNSTQLATSSSDGTVRLWNAIERTGAVQTFHGHSSHVTSVDFHPKSTEV 562
H+ ITD+RF T+LATSS D T+R+W+A ++ TF GHS+ V S+DFHP ++
Sbjct: 612 HSMIITDVRFSSIMTRLATSSFDKTIRVWDANNPEYSLHTFIGHSTSVVSLDFHPNKEDI 671
Query: 563 LCSCDDNGEICFWKIGQSKVSRISRMKQGGTGRVRFQPQIGQLLAVATGSIVNIVDVEKE 622
+CSCD +GE+ W I R+ GG ++RFQP G+ LAV + +++I+D E
Sbjct: 672 ICSCDSDGEVRCWSIDNGSCVNCVRVFNGGAIQLRFQPHHGKYLAVVSEKMISILDAETL 731
Query: 623 ASLHSLPKVHTNEVNCICWDEKGERVASVSQDTVKVWSVASGACIHELRSHGNQYQSCIF 682
S + H ++ +CWD G +ASVS+D++K
Sbjct: 732 HIYRSDLQGHLKNIHSVCWDATGGYLASVSEDSIK------------------------- 766
Query: 683 HPRYPNVLIVGGYQTMELWSLSDNHRNTV-QAHEGLIAALAHSQFTGMIAS 732
++ELW + + + T+ AH+G+I +LA S +G+IAS
Sbjct: 767 --------------SLELWDIREKNIVTINNAHDGMIPSLAASNASGLIAS 803
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 51/57 (89%)
Query: 11 MLDVYIYDYLVKRNMHNTAKAFMTEGKVATDPVAIDAPGGFLFEWWSIFWDIFDART 67
+LD+YIYDY VKRN+ TAKAF +EG V+TDPVAIDAPGGFLFEWWSIFWDIF A+T
Sbjct: 10 LLDIYIYDYFVKRNLQTTAKAFQSEGNVSTDPVAIDAPGGFLFEWWSIFWDIFIAQT 66
>Os01g0780400 WD40-like domain containing protein
Length = 838
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 5/229 (2%)
Query: 475 KLLASAGHEKKVFLWNMDNLNMDTKIEEHTNFITDIRFKPNSTQLATSSSDGTVRLWNAI 534
++ + G ++KV LW + + HT + + F + SS+G+++LW+ +
Sbjct: 31 RVFITGGSDRKVNLWAIGKQTPLLSLSGHTGSVEAVEFDTAEVLVLAGSSNGSIKLWD-L 89
Query: 535 ERTGAVQTFHGHSSHVTSVDFHPKSTEVLCSCDDNGEICFWKIGQSKVSRISRMKQGGTG 594
E V++ GH S TSV+FHP E S + ++ W I + + +G
Sbjct: 90 EEAKVVRSLTGHRSSCTSVEFHPFG-EFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIR 148
Query: 595 RVRFQPQIGQLLAVATGSIVNIVDVEKEASLHSLPKVHTNEVNCICWDEKGERVASVSQD 654
+RF P ++ +IV + D+ LH K H+ ++ CI + + +A+ S D
Sbjct: 149 TIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDF-KFHSGQIRCIDFHPQEFLLATGSAD 207
Query: 655 -TVKVWSVASGACIHELRSHGNQYQSCIFHPRYPNVLIVGGYQTMELWS 702
TVK W + + I +S +FHP L G Q+++++S
Sbjct: 208 RTVKFWDLETFELIGSAGPEATGVRSTVFHPD-GKTLFCGLDQSLKVFS 255
>Os01g0951000 WD40-like domain containing protein
Length = 554
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/273 (19%), Positives = 104/273 (38%), Gaps = 7/273 (2%)
Query: 474 GKLLASAGHEKKVFLWNMDNLNMDTKIEEHTNFITDIRFKPNSTQLATSSSDGTVRLWNA 533
G+ L + + LWN + N + ++ H + + + N + T G ++ W +
Sbjct: 4 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAVRSMIWSNNENWMVTGDDGGAIKYWQS 63
Query: 534 IERTGAVQTFHGHSSHVTSVDFHPKSTEVLCSCDDNGEICFWKIGQSKVSRISRMKQGGT 593
V H V + F ++ CSC D+ + W + + R
Sbjct: 64 NMNNVKVNKT-AHRESVRDLSFC-RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV 121
Query: 594 GRVRFQPQIGQLLAVATGSIVNIVDVEKEASLHSLPKVHTNEVNCICWDEKGERVASVSQ 653
V + P L++ +V + D + L S H N V C+ W++ G V + S+
Sbjct: 122 KSVDWHPTKSLLVSGGKDYLVKLWDAKSGRELRSF-HGHKNIVQCVKWNQNGNWVLTASK 180
Query: 654 D-TVKVWSVASGACIHELRSHGNQYQSCIFHPRYPNVLIVGGYQTMELWSLSDNHRNTVQ 712
D +K++ + S + R H + +HP + + G Y L + ++
Sbjct: 181 DQIIKLYDIRSMKELESFRGHNKDVTALAWHPFHEEYFVSGSYDGAIFHWLVGHETPQIE 240
Query: 713 ---AHEGLIAALAHSQFTGMIASASHDRSVKLW 742
AH+ + LA ++ S +D + + W
Sbjct: 241 INNAHDNSVWDLAWHPVGYLLCSGGNDHATRFW 273
>Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP)
(U5 snRNP- specific 40 kDa protein) (38 kDa splicing
factor)
Length = 343
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 111/254 (43%), Gaps = 12/254 (4%)
Query: 459 RTSNNKVVCCHFSTDGKLLASAGHEKKVFLWNMDNLNMDTKIEEHTNFITDIRFKPNSTQ 518
R N V+ ++TDG + SA +K V +W+++ K+ EH++F+
Sbjct: 93 RGHKNAVLDLQWTTDGTQIISASPDKTVRVWDVETGKQVKKMAEHSSFVNSCCPARKWPP 152
Query: 519 LATSSS-DGTVRLWNAIERTGAVQTFHGHSSHVTSVDFHPKSTEVLCSCDDNGEICFWKI 577
L S S DGT +LW+ +R GA+QT +T+V F + +V DN ++ +W +
Sbjct: 153 LVVSGSDDGTAKLWDLRQR-GAIQTL-PDKYQITAVSFSEAADKVFTGGLDN-DVKWWDL 209
Query: 578 GQSKVSRISRMKQGGTGRVRFQPQIGQLLAVATGSIVNIVDVEKEASLHSLPKV-----H 632
+++V+ + Q ++ P LL A + + I D+ A + K H
Sbjct: 210 RKNEVTEYLKGHQDMITGMQLSPDGSYLLTNAMDNELKIWDLRPYAPENRNIKTLTGHQH 269
Query: 633 TNEVNCI-C-WDEKGERVASVSQD-TVKVWSVASGACIHELRSHGNQYQSCIFHPRYPNV 689
E N + C W +V + S D V +W S +++L H FHP P +
Sbjct: 270 NFEKNLLKCSWSPDNRKVTAGSADRMVYIWDTTSRRILYKLPGHNGSVNETAFHPTEPVI 329
Query: 690 LIVGGYQTMELWSL 703
G + + L L
Sbjct: 330 GSCGSDKQIYLGEL 343
>Os10g0104500 Similar to Notchless-related
Length = 480
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 111/289 (38%), Gaps = 51/289 (17%)
Query: 500 IEEHTNFITDIRFKPNSTQLATSSSDGTVRLWNAIERTGAVQTFHGHSSHVTSVDFHPKS 559
I HT + + F P+ LA+ S D TVR W+ +T + T GH + V + + P
Sbjct: 111 IAGHTEAVLAVSFSPDGRCLASGSGDTTVRFWDLSTQT-PLFTCKGHKNWVLCIAWSPDG 169
Query: 560 TEVLCSCDDNGEICFW--KIGQSKVSRISRMKQGGTG----RVRFQPQIGQLLAVATGSI 613
L S +GE+ W K G+ + ++ ++ T V Q + ++ +
Sbjct: 170 NH-LVSGSKSGELILWDPKTGKQLGTPLTGHRKWITAVSWEPVHLQSPCRRFVSTSKDGD 228
Query: 614 VNIVDVEKEASLHSLPKVHTNEVNCICWDEKGERVASVSQDTVKVWSVASGACIHELRSH 673
I D+ + +L HTN V C+ W G ++KVW + G + L+ H
Sbjct: 229 ARIWDMTTRKCVIALTG-HTNSVTCVKWGGDGLIYTGSEDCSIKVWETSQGKLVKTLQGH 287
Query: 674 GNQYQSCIFHPRYPNVLIVGGYQ------------------------------------- 696
G+ S Y VL G Y
Sbjct: 288 GHWVNSLALSTEY--VLRTGAYDHTGKTYSTAEEMKEAALARYKKMRGNAPERLVSGSDD 345
Query: 697 -TMELW--SLSDNHRNTVQAHEGLIAALAHSQFTGMIASASHDRSVKLW 742
TM LW ++S + + H+ L+ + S +ASAS D+SVKLW
Sbjct: 346 FTMFLWEPTISKQPKARMTGHQKLVNHVYFSPDGQWLASASFDKSVKLW 394
>Os11g0594200 Similar to Notchless gene homolog
Length = 480
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 110/289 (38%), Gaps = 51/289 (17%)
Query: 500 IEEHTNFITDIRFKPNSTQLATSSSDGTVRLWNAIERTGAVQTFHGHSSHVTSVDFHPKS 559
I HT + + F P+ LA+ S D TVR W+ +T + T GH + V + + P
Sbjct: 111 IAGHTEAVLAVSFSPDGRCLASGSGDTTVRFWDLNTQT-PLFTCKGHKNWVLCIAWSPDG 169
Query: 560 TEVLCSCDDNGEICFW--KIGQSKVSRISRMKQGGTG----RVRFQPQIGQLLAVATGSI 613
L S +GE+ W K G+ + ++ ++ T V Q + ++ +
Sbjct: 170 NH-LVSGSKSGELILWDPKTGKQLGTPLTGHRKWITAVSWEPVHLQAPCRRFVSASKDGD 228
Query: 614 VNIVDVEKEASLHSLPKVHTNEVNCICWDEKGERVASVSQDTVKVWSVASGACIHELRSH 673
I D+ + +L HTN V C+ W G +KVW + G + L+ H
Sbjct: 229 ARIWDITTRKCVIALTG-HTNSVTCVKWGGDGLIYTGSEDCLIKVWETSQGKLVKTLQGH 287
Query: 674 GNQYQSCIFHPRYPNVLIVGGYQ------------------------------------- 696
G+ S Y +L G Y
Sbjct: 288 GHWVNSLALSTEY--ILRTGAYDHTGKTYSTADEMKEAALARYKKMRGNAPERLVSGSDD 345
Query: 697 -TMELW--SLSDNHRNTVQAHEGLIAALAHSQFTGMIASASHDRSVKLW 742
TM LW ++S + + H+ L+ + S +ASAS D+SVKLW
Sbjct: 346 FTMFLWEPTISKQPKARMTGHQKLVNHVYFSPDGQWLASASFDKSVKLW 394
>AK110077
Length = 1242
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 120/287 (41%), Gaps = 17/287 (5%)
Query: 460 TSNNKVVCCHFSTDGKLLASAGHEKKVFLWNMDNLNMDTKIEEHTNFITDIRFKPNSTQL 519
+ +N+V F LLAS+ H + LWN + ++EEH + I F P+ L
Sbjct: 9 SKSNRVKGIAFHPRLPLLASSLHNGSIQLWNYQTGTIYDRLEEHDGPVRGICFHPSQPLL 68
Query: 520 ATSSSDGTVRLWNAIERTGAVQTFHGHSSHVTSVDFHPKSTEVLCSCDDNGEICFWKIGQ 579
+ D +++WN R + T +GH +V +V FH + +L + DD I W
Sbjct: 69 VSGGDDYKIKVWNHKTRK-CLFTLNGHLDYVRTVFFHHEHPWILSASDDQ-TIRIWNWQS 126
Query: 580 SKVSRISRMKQGGTGRVRFQPQIGQLLAVATGSIVNIVDVEKEASLHSLPKVHTNEVNCI 639
I +F P+ +++ + V + D+ ++ + + E
Sbjct: 127 RTCIAILTGHNHYVMCAQFHPKDDLIVSASMDQTVRVWDISGLRKKNTSAQPMSIE---- 182
Query: 640 CWDEKGERVASVSQDTVKVWSVASGACIHELRSHGNQYQSCIFHPRYPNVLIVGGYQTME 699
E++A + ++ + L H FHP P ++ G + ++
Sbjct: 183 ------EQIARANSGQADLFGNTDAMVKYVLEGHDRGINWASFHPTLPLIVSAGDDRQIK 236
Query: 700 LWSLSDN---HRNTVQAH-EGLIAALAHSQFTGMIASASHDRSVKLW 742
LW +SD+ +T + H + +AL H + +I+ A D+++++W
Sbjct: 237 LWRMSDSKAWEVDTCRGHFNNVSSALFHPRHEFIISDA-EDKTIRVW 282
>Os07g0405100 Similar to F-box-like/WD-repeat protein ebi
Length = 555
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 126/310 (40%), Gaps = 35/310 (11%)
Query: 462 NNKVVCCHFSTDGKLLASAGHEKKVFLWNMDN-----------------LNMDTKIEEHT 504
+++V C +S G LLAS + +W + + + + E +
Sbjct: 207 SSEVFACAWSPAGSLLASGSGDSTARIWTIPDGPCGSITQSSPPGVHVLKHFKGRTNEKS 266
Query: 505 NFITDIRFKPNSTQLATSSSDGTVRLWNAIERTGAV-QTFHGHSSHVTSVDFHPKSTEVL 563
+T + + T LAT S DG R+WN+ G + QT H + S+ ++ K +L
Sbjct: 267 KDVTTLDWNGEGTLLATGSYDGQARIWNS---DGELKQTLFKHKGPIFSLKWNKKGDFLL 323
Query: 564 CSCDDNGEICFWKIGQSKVSRISRMKQGGTGRVRFQPQIGQLLAVATGSIVNIVDVEKEA 623
D I W + + T V ++ +T +++ + + +
Sbjct: 324 SGSVDKTAI-VWDTKTWECKQQFEFHSAPTLDVDWRNN-NSFATCSTDNMIYVCKIGDQR 381
Query: 624 SLHSLPKVHTNEVNCICWDEKGERVASVSQD-TVKVWSVASGACIHELRSHGNQYQSCIF 682
+ S H +EVN I WD G +AS S D T K+WS+ C+++ + H + + +
Sbjct: 382 PVKSFSG-HQSEVNAIKWDPTGSLLASCSDDWTAKIWSMKQDKCVYDFKEHTKEIYTIRW 440
Query: 683 HPRYPN--------VLIVGGY-QTMELWSLSDNH-RNTVQAHEGLIAALAHSQFTGMIAS 732
P P +L + T++LW + ++ H + ++A S +AS
Sbjct: 441 SPTGPGTNNPNQQLLLASASFDSTIKLWEVEQGRLLYSLAGHRQPVYSVAFSPGGEYLAS 500
Query: 733 ASHDRSVKLW 742
S D+ + +W
Sbjct: 501 GSLDQCLHIW 510
>Os03g0685600 WD40-like domain containing protein
Length = 394
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 13/278 (4%)
Query: 472 TDGKLLASAGHEKKVFLWNMDNLNMDTKIEEHTNFITDIRFKPNSTQLATSSSDGTVRLW 531
TD L+AS G + + FLW + + ++ HT+ + + F + LA+ S DG + +W
Sbjct: 75 TDASLVASGGKDDRGFLWKIGSAEDVLELAGHTDTVCTVAFSSDGNLLASGSFDGRINVW 134
Query: 532 NAIERTGAVQTFHGHSSHVTSVDFHPKSTEVLCSCDDNGEICFWKIGQSKVSRISRMKQG 591
N RT T G S + +HP+ ++ +D + W + +
Sbjct: 135 NTATRT-LQGTLEGSGSGFEWLKWHPRGHLIIAGSEDC-NLWMWNADHNAILNTFAGHSS 192
Query: 592 GTGRVRFQPQIGQLLAVAT-GSIVNIVDVEKEASLHSLP--KVHTNEVNCICWDEKGERV 648
F P G+L+ + + + I D S H + HT+ + C+ + +
Sbjct: 193 TVTCGDFTPD-GKLICTGSDDASLRIWDPRTAQSRHVVRGHGYHTDGLTCLSVTSDSQTI 251
Query: 649 ASVSQD-TVKVWSVASGACIHELRSHGNQYQSCIFHPRYPNVLIVGGYQTMELWSLS-DN 706
S S+D +V V ++ SG + L H + P Y V Q + +W L +
Sbjct: 252 VSGSKDNSVCVVNINSGQVVGSLDGHTGSIECVGISPSYNWVATGSMDQKLIIWDLGRQS 311
Query: 707 HRNTVQAHEGL--IAALAHSQFTGMIASASHDRSVKLW 742
R T EG+ +A L S+F +AS D V++W
Sbjct: 312 IRCTCNHDEGVTSLAWLGPSRF---VASGCIDGMVRIW 346
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,595,538
Number of extensions: 878255
Number of successful extensions: 3259
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 3156
Number of HSP's successfully gapped: 27
Length of query: 743
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 635
Effective length of database: 11,396,689
Effective search space: 7236897515
Effective search space used: 7236897515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)