Os03g0860900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lissencephaly type-1-like homology motif domain containing protein.
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Os03g0860900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lissencephaly type-1-like homology motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.26 | 0.487 | 8.43 | -0.0819 | 1.87 | 0.888 | -0.859 | -1.22 | -0.512 | 12 | 87.89 | 463 | -- | -- |
| 110.14 | 0.489 | 8.42 | -0.137 | 1.86 | 0.875 | -0.87 | -- | -0.525 | 12 | 86.31 | 498 | -- | -- |
| 109.83 | 0.488 | 8.44 | -0.0889 | 1.81 | 0.862 | -- | -1.33 | -0.532 | 12 | 85.93 | 516 | -- | -- |
| 113.75 | 0.497 | 8.42 | -0.213 | 1.86 | 0.873 | -- | -- | -0.528 | 12.2 | 85.28 | 472 | -- | -- |
| 232.91 | 0.711 | 8.43 | 0.041 | -- | 2.21 | -- | -2.77 | -0.474 | -- | 71 | 911 | -- | -- |
| 122.44 | 0.519 | 8.44 | -0.0671 | 1.98 | -- | -1.06 | -- | -0.66 | 11.3 | -- | -- | -- | -- |
| 127.3 | 0.528 | 8.44 | -0.11 | 1.99 | -- | -- | -- | -0.664 | 11.3 | -- | -- | -- | -- |
| 240.17 | 0.722 | 8.44 | -0.21 | -- | 2.39 | -- | -- | -0.456 | -- | 73 | 908 | -- | -- |
| 114.91 | 0.499 | 8.42 | -- | 1.85 | 0.846 | -- | -- | -0.513 | 12.1 | 85 | 493 | -- | -- |
| 374.66 | 0.904 | 8.49 | -0.161 | -- | -- | -- | -- | -0.683 | -- | -- | -- | -- | -- |
| 127.62 | 0.528 | 8.44 | -- | 1.99 | -- | -- | -- | -0.652 | 11.3 | -- | -- | -- | -- |
| 241.37 | 0.724 | 8.43 | -- | -- | 2.36 | -- | -- | -0.434 | -- | 72.33 | 910 | -- | -- |
| 375.34 | 0.904 | 8.48 | -- | -- | -- | -- | -- | -0.665 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.17 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 106.20 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 4 | 106.28 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 5 | 106.28 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 8 | 106.28 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 12 | 106.28 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 21 | 106.28 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 22 | 106.28 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 42 | 106.28 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 45 | 106.28 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 63 | 106.74 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 66 | 106.99 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 68 | 107.01 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 74 | 107.22 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 75 | 107.27 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 79 | 107.33 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 86 | 107.43 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 87 | 107.43 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 89 | 107.44 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 91 | 107.46 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 95 | 107.47 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 97 | 107.47 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 98 | 107.47 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 102 | 107.47 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 104 | 107.47 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 109 | 107.47 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 110 | 107.47 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 111 | 107.47 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 116 | 107.47 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 122 | 107.53 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 131 | 107.81 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 135 | 107.85 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 139 | 108.04 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 141 | 108.10 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 146 | 108.38 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 175 | 108.45 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 181 | 108.53 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 184 | 108.56 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 194 | 108.83 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 22 | 5 |
| 195 | 108.84 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 208 | 109.08 | humidity | 90.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 212 | 109.13 | humidity | 90.0 | 270 | < th | dose independent | rect. | 21 | 21 |
| 215 | 109.17 | humidity | 90.0 | 270 | < th | dose independent | rect. | 22 | 19 |
| 224 | 109.30 | temperature | 25.0 | 720 | > th | dose independent | rect. | 23 | 1 |
| 225 | 109.31 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 228 | 109.36 | humidity | 90.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 229 | 109.41 | humidity | 90.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 239 | 109.59 | humidity | 90.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 245 | 109.64 | humidity | 90.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 247 | 109.64 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 258 | 109.70 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 262 | 109.75 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 294 | 109.91 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 298 | 109.93 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 319 | 110.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 326 | 110.03 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 335 | 110.05 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 342 | 110.09 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 366 | 110.16 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 369 | 110.17 | humidity | 90.0 | 270 | < th | dose independent | rect. | 9 | 22 |
| 378 | 110.20 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 404 | 110.27 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 14 | 16 |
| 425 | 110.34 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 427 | 110.34 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 428 | 110.34 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 429 | 110.35 | humidity | 90.0 | 270 | < th | dose independent | rect. | 22 | 5 |
| 466 | 110.48 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 510 | 110.55 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 513 | 110.56 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 518 | 110.57 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 527 | 110.58 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 544 | 110.60 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 547 | 110.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 551 | 110.62 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 556 | 110.63 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 571 | 110.67 | radiation | 1.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 628 | 110.75 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 5 |
| 632 | 110.78 | radiation | 1.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 633 | 110.78 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 657 | 110.81 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 683 | 110.84 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 684 | 110.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 703 | 110.87 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 716 | 110.89 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 3 |
| 736 | 110.93 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 737 | 110.93 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 750 | 110.94 | humidity | 90.0 | 270 | > th | dose independent | rect. | 7 | 23 |
| 798 | 111.02 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 812 | 111.05 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 831 | 111.06 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 857 | 111.10 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 869 | 111.12 | humidity | 90.0 | 270 | > th | dose independent | no | NA | NA |
| 887 | 111.12 | humidity | 90.0 | 720 | < th | dose independent | rect. | 7 | 19 |
| 896 | 111.13 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 898 | 111.13 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 923 | 111.16 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 924 | 111.16 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 946 | 111.17 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 947 | 111.17 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 965 | 111.19 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 969 | 111.19 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 971 | 111.19 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 978 | 111.20 | humidity | 90.0 | 270 | > th | dose independent | rect. | 11 | 23 |