BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0815700 Os03g0815700|AK065405
(281 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0815700 KH domain containing protein 532 e-152
Os07g0227400 Similar to RNA binding/signal transduction pro... 438 e-123
Os05g0481500 KH domain containing protein 381 e-106
Os01g0818300 KH domain containing protein 337 8e-93
Os01g0886300 KH domain containing protein 306 1e-83
Os05g0419500 KH domain containing protein 276 1e-74
Os04g0385700 KH domain containing protein 105 5e-23
Os02g0722700 Conserved hypothetical protein 75 4e-14
>Os03g0815700 KH domain containing protein
Length = 281
Score = 532 bits (1371), Expect = e-152, Method: Compositional matrix adjust.
Identities = 263/281 (93%), Positives = 263/281 (93%)
Query: 1 MSGLYSPGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIM 60
MSGLYSPGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIM
Sbjct: 1 MSGLYSPGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIM 60
Query: 61 RVSSIVHNHGFGDFDRHXXXXXXXXXXXXXXXXXXGNGFSPWNGLHQERLGFPQGTSMDW 120
RVSSIVHNHGFGDFDRH GNGFSPWNGLHQERLGFPQGTSMDW
Sbjct: 61 RVSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFSPWNGLHQERLGFPQGTSMDW 120
Query: 121 QGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGS 180
QGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGS
Sbjct: 121 QGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGS 180
Query: 181 IKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDF 240
IKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDF
Sbjct: 181 IKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDF 240
Query: 241 YKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAKTGQ 281
YKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAKTGQ
Sbjct: 241 YKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAKTGQ 281
>Os07g0227400 Similar to RNA binding/signal transduction protein QkI-4
Length = 286
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/281 (77%), Positives = 242/281 (86%), Gaps = 6/281 (2%)
Query: 3 GLYS-PGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIMR 61
GLY+ GFSPAR LSPQIRSNP + DSQYL+ELLAEH KLGPFMQVLPICS+LL+QEIMR
Sbjct: 4 GLYNHQGFSPARTLSPQIRSNP-EADSQYLSELLAEHHKLGPFMQVLPICSRLLNQEIMR 62
Query: 62 VSSIVHNHGFGDFDRHXXXXXXXXXXXXXXXXXXGNGFSPWNGLHQERLGFPQ----GTS 117
VSS+V++HGF DFDR GNGF PWNG+HQERLGFP GTS
Sbjct: 63 VSSMVNDHGFNDFDRRRYRSPSPMSSPIMRPNLHGNGFGPWNGIHQERLGFPPPPPPGTS 122
Query: 118 MDWQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRG 177
MDWQGAPPS S++VKKI+R++VPVD+YPNFNFVGRILGPRGNSLKRVEASTGCRVFIRG
Sbjct: 123 MDWQGAPPSHGSYIVKKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRG 182
Query: 178 KGSIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDES 237
KGSIKD KE+KL+GKPGYEHL+DPLHILIEAE PA+IID RLR AQE+++ELLKPVDES
Sbjct: 183 KGSIKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDES 242
Query: 238 QDFYKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAK 278
QD+YKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAK
Sbjct: 243 QDYYKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAK 283
>Os05g0481500 KH domain containing protein
Length = 282
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/273 (69%), Positives = 216/273 (79%), Gaps = 5/273 (1%)
Query: 9 FSPARNLSPQIRSN-PTDVDS--QYLAELLAEHQKLGPFMQVLPICSKLLSQEIMRVSSI 65
FSP R +SPQ+R P D S QYLAELL EHQKLGPFMQVLPICS+LL+QEIMRVS +
Sbjct: 11 FSPGRAMSPQVRPPVPPDAASGGQYLAELLQEHQKLGPFMQVLPICSRLLNQEIMRVSGM 70
Query: 66 VHNHGFGDFDRHXXXXXXXXXXXXXXXXXXGNGFSPWNGLHQERLGFPQGTSMDWQGAPP 125
G GDF+R GN F PWNG+ ER+ F QG WQGAP
Sbjct: 71 FRQPGVGDFERSQPASPNQMHPSHIVPNFCGNAFGPWNGMRPERVSFSQGPG--WQGAPQ 128
Query: 126 SPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPG 185
SPSS++VKKILRL++P D+YPNFNF+GR+LGPRGNSLKR+EASTGCRVFIRGKGSIKDP
Sbjct: 129 SPSSYIVKKILRLEIPTDAYPNFNFIGRLLGPRGNSLKRIEASTGCRVFIRGKGSIKDPN 188
Query: 186 KEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQ 245
KE++L+G+ GYEHL DPLHILIEAE PA++IDARL AQE++EELLKPVDESQD+YKRQQ
Sbjct: 189 KEEQLKGRAGYEHLDDPLHILIEAELPANVIDARLAKAQEILEELLKPVDESQDYYKRQQ 248
Query: 246 LRELAMLNSTLREDSPHPGSVSPFSNGGMKRAK 278
LRELA+LNS LRE+SPHPGS SPFSNGGMKR K
Sbjct: 249 LRELALLNSPLREESPHPGSASPFSNGGMKRMK 281
>Os01g0818300 KH domain containing protein
Length = 283
Score = 337 bits (863), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 208/274 (75%), Gaps = 6/274 (2%)
Query: 9 FSPARNLSPQ--IRSNPT-DVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIMRVSSI 65
FSPAR +SP +R P+ QYLAELL E QK+GPF+QVLPIC +LL+QEIMR+S+I
Sbjct: 11 FSPARAMSPLPLVRPPPSPGAAGQYLAELLQEQQKIGPFVQVLPICGRLLNQEIMRMSAI 70
Query: 66 VHNHGFGDFDRHXXXXXXXXXXXXXXXXXXGNGFSPWNGLHQERLGFPQGTSMDWQGAPP 125
V + G + DR GNGF+PW G E+ GFP+GT M W+GA
Sbjct: 71 VSHLGVREHDRLPIASPNQMHPLPQVPNFCGNGFNPWTGTLPEKNGFPRGT-MGWEGAAH 129
Query: 126 SPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPG 185
PS ++VKKI+RL+VP D+YP+FNF+GR+LGPRGNSLKRVEASTGCRVFIRGKGSIKDP
Sbjct: 130 DPS-YIVKKIVRLEVPTDAYPHFNFIGRLLGPRGNSLKRVEASTGCRVFIRGKGSIKDPI 188
Query: 186 KEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQ 245
KE++L+G+PGYEHLSDP HILIEAE PA +ID RL AQE++E+LLKPV+ESQDF KRQQ
Sbjct: 189 KEEQLKGRPGYEHLSDPTHILIEAELPADVIDTRLAQAQEILEDLLKPVEESQDFLKRQQ 248
Query: 246 LRELAMLNSTLREDSPHP-GSVSPFSNGGMKRAK 278
LRELA+LNST REDSPH GS SPFSNG K K
Sbjct: 249 LRELAVLNSTYREDSPHQNGSASPFSNGSTKLGK 282
>Os01g0886300 KH domain containing protein
Length = 290
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/256 (59%), Positives = 188/256 (73%), Gaps = 5/256 (1%)
Query: 29 QYLAELLAEHQKLGPFMQVLPICSKLLSQEIMRVSSIVHNHGFGDFDRHXXXXXXXXXXX 88
+YLAELLAE QKL PF+QVLP C++LL+QEI+R SS+ NH F D +R
Sbjct: 37 RYLAELLAERQKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEHGSPLRLPGL 96
Query: 89 XXXXXXXGNGFSPWNGLHQERLGFPQGTSMDWQGAPPSPSSHVVKKILRLDVPVDSYPNF 148
W+G+ E + Q +SM W G P + VVKK++RLDVPVD YPN+
Sbjct: 97 PVNGQPMD--LEGWSGMQTENMRVLQASSMGWNGPPAITGTPVVKKVVRLDVPVDKYPNY 154
Query: 149 NFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGYEHLSDPLHILIE 208
NFVGR+LGPRGNSLKRVEAST CRV+IRG+GS+KD KEDKLR KPGYEHL++PLH+L+E
Sbjct: 155 NFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVE 214
Query: 209 AEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRELAMLNSTLREDSPHPG---S 265
AEFPA IID RL A ++E+LLKP+DES D+YK+QQLRELA+LN TLRE+SP P S
Sbjct: 215 AEFPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREESPSPHLSPS 274
Query: 266 VSPFSNGGMKRAKTGQ 281
VSPF++ GMKRAKTG+
Sbjct: 275 VSPFNSTGMKRAKTGR 290
>Os05g0419500 KH domain containing protein
Length = 291
Score = 276 bits (706), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/265 (56%), Positives = 186/265 (70%), Gaps = 8/265 (3%)
Query: 22 NPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIMRVSSIVHNHGFGDFDRHXXXX 81
+P +YLAELLAE QKL PFMQVLP C++LL+QEI+R SS+ N F + +R
Sbjct: 30 SPASERERYLAELLAERQKLAPFMQVLPFCNRLLNQEILRASSLPPNPNFVEPERVNHGS 89
Query: 82 XXXXXXXXXXXXXXGNGFSPWNGLHQERLGFPQGTSMDWQGAPPSPSSHVVKKILRLDVP 141
W+G+ E +G Q SM W AP S VVKK++R+DVP
Sbjct: 90 PLRLTGHPMNGQPMD--LEGWSGMQTE-MGVLQSPSMGWNVAPGVAGSPVVKKVVRIDVP 146
Query: 142 VDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGYEHLSD 201
VD YPN+NFVGR+LGPRGNSLKRVEA+T CRV+IRG+GS+KD KEDKLR KPGYEHL+D
Sbjct: 147 VDKYPNYNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLND 206
Query: 202 PLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRELAMLNSTLRED-- 259
PLH+L+EAEFP+ I+D RL A ++E+LLKPVDES D+YK+QQLRELA+LN TLRE+
Sbjct: 207 PLHVLVEAEFPSDIVDVRLNQAVAILEDLLKPVDESMDYYKKQQLRELAILNGTLREESP 266
Query: 260 ---SPHPGSVSPFSNGGMKRAKTGQ 281
SVSPF++ GMKRAKTG+
Sbjct: 267 SPHLSPSPSVSPFNSTGMKRAKTGR 291
>Os04g0385700 KH domain containing protein
Length = 231
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 83/124 (66%), Gaps = 6/124 (4%)
Query: 137 RLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGY 196
+L +P+ +P +NF+G I+GPRGN+ KR+E TG ++ IRGKGS+K+ K KP
Sbjct: 98 KLYIPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDP 157
Query: 197 EHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRELAMLNSTL 256
D LH+L+EAE + +DA A ++E+LL PVDE + +KRQQLRELA LN+T+
Sbjct: 158 SENED-LHVLVEAETQEA-LDA----AAGMVEKLLTPVDEVLNEHKRQQLRELAALNATI 211
Query: 257 REDS 260
R+D
Sbjct: 212 RDDE 215
>Os02g0722700 Conserved hypothetical protein
Length = 52
Score = 75.5 bits (184), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/48 (66%), Positives = 41/48 (85%)
Query: 187 EDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPV 234
ED +RGKPGYEHL++PLHIL+EAE P IID RL A++++E+LLKPV
Sbjct: 1 EDMMRGKPGYEHLNEPLHILVEAELPVEIIDTRLIQARDILEDLLKPV 48
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,111,982
Number of extensions: 428518
Number of successful extensions: 934
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 918
Number of HSP's successfully gapped: 8
Length of query: 281
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 181
Effective length of database: 11,814,401
Effective search space: 2138406581
Effective search space used: 2138406581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)