BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0732200 Os03g0732200|Os03g0732200
(104 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0732200 Conserved hypothetical protein 211 7e-56
Os02g0738900 Similar to Dynamin 2B (EC 3.6.5.5) (Dynamin-re... 110 2e-25
Os10g0185200 Similar to Dynamin 2B (EC 3.6.5.5) (Dynamin-re... 95 1e-20
Os06g0247800 Similar to Dynamin-like protein (Fragment) 85 1e-17
Os08g0425100 Dynamin family protein 83 5e-17
Os10g0189800 78 2e-15
Os10g0185100 Hypothetical protein 77 2e-15
Os08g0271600 Conserved hypothetical protein 75 2e-14
Os10g0556500 66 7e-12
>Os03g0732200 Conserved hypothetical protein
Length = 104
Score = 211 bits (538), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MEAVEELTQLSESMRQVASLLADDDPCDDSTPRRLSTFVNAVALGNVGAGKMAVLNSLIG 60
MEAVEELTQLSESMRQVASLLADDDPCDDSTPRRLSTFVNAVALGNVGAGKMAVLNSLIG
Sbjct: 1 MEAVEELTQLSESMRQVASLLADDDPCDDSTPRRLSTFVNAVALGNVGAGKMAVLNSLIG 60
Query: 61 HPMLKEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASSDAQQ 104
HPMLKEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASSDAQQ
Sbjct: 61 HPMLKEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASSDAQQ 104
>Os02g0738900 Similar to Dynamin 2B (EC 3.6.5.5) (Dynamin-related protein 2B)
(Dynamin-like protein 3)
Length = 923
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 59/64 (92%)
Query: 1 MEAVEELTQLSESMRQVASLLADDDPCDDSTPRRLSTFVNAVALGNVGAGKMAVLNSLIG 60
MEA++EL QL+ESMRQ ASLLADDDP D+++PRR STF+NAVALGNVGAGK AVLNSLIG
Sbjct: 6 MEAMDELVQLAESMRQAASLLADDDPSDEASPRRPSTFLNAVALGNVGAGKSAVLNSLIG 65
Query: 61 HPML 64
HP+L
Sbjct: 66 HPVL 69
>Os10g0185200 Similar to Dynamin 2B (EC 3.6.5.5) (Dynamin-related protein 2B)
(Dynamin-like protein 3)
Length = 109
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 46/47 (97%)
Query: 1 MEAVEELTQLSESMRQVASLLADDDPCDDSTPRRLSTFVNAVALGNV 47
M+AVEELTQLSESMRQVASLLADDDPCDDS PRRLSTFVNAVALGNV
Sbjct: 32 MDAVEELTQLSESMRQVASLLADDDPCDDSAPRRLSTFVNAVALGNV 78
>Os06g0247800 Similar to Dynamin-like protein (Fragment)
Length = 911
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/64 (85%), Positives = 58/64 (90%)
Query: 1 MEAVEELTQLSESMRQVASLLADDDPCDDSTPRRLSTFVNAVALGNVGAGKMAVLNSLIG 60
MEAVEEL QLSE+MRQ ASLLADDDP DDS PRR STF+NAVALGNVGAGK AVLNSLIG
Sbjct: 1 MEAVEELAQLSEAMRQAASLLADDDPSDDSAPRRPSTFLNAVALGNVGAGKSAVLNSLIG 60
Query: 61 HPML 64
HP+L
Sbjct: 61 HPVL 64
>Os08g0425100 Dynamin family protein
Length = 766
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 1 MEAVEELTQLSESMRQVASLLADDDPCDDSTPRRL-STFVNAVALGNVGAGKMAVLNSLI 59
MEA+EEL++L+++ RQ ++LLADDDP + RR S+F+ VALGN+GAGK AVLN LI
Sbjct: 1 MEAIEELSELADATRQASALLADDDPSEQPAQRRGGSSFLTVVALGNIGAGKSAVLNGLI 60
Query: 60 GHPML 64
GHP+L
Sbjct: 61 GHPVL 65
>Os10g0189800
Length = 275
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/40 (95%), Positives = 39/40 (97%)
Query: 65 KEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASSDAQQ 104
KEAARKNEEETEKLRQQGSEIQSF+RSL GSKFASSDAQQ
Sbjct: 236 KEAARKNEEETEKLRQQGSEIQSFLRSLFGSKFASSDAQQ 275
>Os10g0185100 Hypothetical protein
Length = 48
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/40 (97%), Positives = 39/40 (97%)
Query: 65 KEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASSDAQQ 104
KEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFAS DAQQ
Sbjct: 9 KEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASLDAQQ 48
>Os08g0271600 Conserved hypothetical protein
Length = 274
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/40 (90%), Positives = 37/40 (92%)
Query: 65 KEAARKNEEETEKLRQQGSEIQSFVRSLIGSKFASSDAQQ 104
KE ARKNEEETEKLR QGSEIQSF+RSL GSKFASSDAQQ
Sbjct: 235 KEVARKNEEETEKLRHQGSEIQSFLRSLFGSKFASSDAQQ 274
>Os10g0556500
Length = 205
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
Query: 1 MEAVEELTQLSESMRQVASLL-ADDDPCDDSTPRRLSTFVNAVALGNV 47
MEA+++L QL+ESM Q ASLL D+DP D+S+PRR STF+NAVALGNV
Sbjct: 1 MEAMDKLVQLAESMCQAASLLLGDNDPSDESSPRRPSTFLNAVALGNV 48
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.124 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,981,829
Number of extensions: 103649
Number of successful extensions: 386
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 9
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)