Os10g0556500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0556500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 287.98 | 0.797 | 2.96 | 0.348 | 0.315 | 0.278 | 1.07 | 1.41 | -0.0911 | 14.3 | 72.01 | 143 | -- | -- |
| 292.79 | 0.797 | 2.96 | 0.433 | 0.296 | 0.264 | 0.258 | -- | -0.081 | 13.8 | 72.87 | 144 | -- | -- |
| 290.46 | 0.794 | 2.95 | 0.413 | 0.305 | 0.261 | -- | 0.768 | -0.0844 | 13.4 | 72 | 142 | -- | -- |
| 292.75 | 0.797 | 2.95 | 0.446 | 0.304 | 0.26 | -- | -- | -0.0746 | 13.3 | 72.81 | 142 | -- | -- |
| 293.77 | 0.798 | 2.96 | 0.386 | -- | 0.101 | -- | 0.782 | -0.0937 | -- | 73 | 144 | -- | -- |
| 295.38 | 0.806 | 2.95 | 0.427 | 0.152 | -- | 0.0315 | -- | -0.0805 | 10.5 | -- | -- | -- | -- |
| 295.39 | 0.805 | 2.95 | 0.428 | 0.152 | -- | -- | -- | -0.0805 | 10.4 | -- | -- | -- | -- |
| 294.64 | 0.799 | 2.96 | 0.39 | -- | 0.203 | -- | -- | -0.115 | -- | 73 | 842 | -- | -- |
| 298.02 | 0.804 | 2.95 | -- | 0.283 | 0.231 | -- | -- | -0.1 | 13 | 72.01 | 144 | -- | -- |
| 296.79 | 0.805 | 2.95 | 0.425 | -- | -- | -- | -- | -0.081 | -- | -- | -- | -- | -- |
| 300.21 | 0.811 | 2.96 | -- | 0.149 | -- | -- | -- | -0.128 | 10.2 | -- | -- | -- | -- |
| 299.58 | 0.806 | 2.96 | -- | -- | 0.245 | -- | -- | -0.117 | -- | 75 | 833 | -- | -- |
| 301.56 | 0.811 | 2.96 | -- | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 276.37 | wind | 3e+00 | 10 | > th | dose dependent | rect. | 24 | 1 |
| 3 | 276.65 | humidity | 9e+01 | 90 | > th | dose independent | rect. | 14 | 1 |
| 6 | 276.65 | humidity | 9e+01 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 10 | 277.16 | radiation | 1e+01 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 16 | 277.95 | wind | 5e+00 | 30 | > th | dose independent | rect. | 23 | 9 |
| 19 | 278.16 | wind | 5e+00 | 90 | > th | dose independent | rect. | 23 | 1 |
| 27 | 278.38 | radiation | 1e+01 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 32 | 278.64 | precipitation | 1e-01 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 33 | 278.64 | precipitation | 1e-01 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 35 | 278.84 | radiation | 1e+01 | 10 | < th | dose independent | rect. | 15 | 1 |
| 40 | 278.88 | precipitation | 1e-01 | 30 | > th | dose independent | rect. | 23 | 1 |
| 43 | 278.88 | wind | 5e+00 | 30 | > th | dose independent | rect. | 24 | 6 |
| 45 | 278.88 | precipitation | 1e-01 | 30 | > th | dose dependent | rect. | 23 | 1 |
| 50 | 278.90 | wind | 5e+00 | 30 | > th | dose dependent | rect. | 24 | 6 |
| 54 | 278.93 | wind | 5e+00 | 30 | > th | dose independent | rect. | 24 | 4 |
| 56 | 278.93 | wind | 5e+00 | 30 | > th | dose dependent | rect. | 24 | 4 |
| 63 | 279.00 | radiation | 1e+01 | 90 | < th | dose independent | rect. | 15 | 1 |
| 65 | 279.01 | wind | 5e+00 | 10 | > th | dose independent | rect. | 24 | 2 |
| 76 | 279.14 | wind | 5e+00 | 30 | > th | dose independent | rect. | 22 | 3 |
| 86 | 279.31 | wind | 1e+00 | 30 | < th | dose independent | rect. | 12 | 4 |
| 88 | 279.32 | humidity | 8e+01 | 10 | > th | dose independent | rect. | 15 | 1 |
| 96 | 279.32 | wind | 3e+00 | 10 | > th | dose dependent | rect. | 22 | 3 |
| 98 | 279.35 | wind | 1e+00 | 30 | < th | dose independent | rect. | 12 | 10 |
| 105 | 279.49 | wind | 1e+00 | 30 | < th | dose independent | rect. | 10 | 12 |
| 111 | 279.54 | wind | 1e+00 | 10 | < th | dose dependent | rect. | 12 | 10 |
| 128 | 279.67 | wind | 1e+00 | 30 | < th | dose independent | rect. | 10 | 6 |
| 134 | 279.68 | wind | 5e+00 | 30 | > th | dose dependent | rect. | 23 | 9 |
| 153 | 279.92 | wind | 1e+00 | 30 | < th | dose dependent | rect. | 10 | 12 |
| 180 | 280.32 | atmosphere | 1e+03 | 90 | < th | dose dependent | rect. | 8 | 6 |
| 181 | 280.33 | wind | 1e+00 | 30 | < th | dose dependent | rect. | 12 | 4 |
| 188 | 280.52 | wind | 5e+00 | 10 | > th | dose dependent | rect. | 22 | 6 |
| 208 | 280.68 | wind | 1e+00 | 30 | < th | dose dependent | rect. | 10 | 6 |
| 250 | 281.23 | radiation | 1e+00 | 10 | < th | dose independent | rect. | 11 | 5 |
| 333 | 281.65 | atmosphere | 1e+03 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 363 | 281.95 | humidity | 9e+01 | 90 | > th | dose dependent | rect. | 11 | 5 |
| 373 | 282.21 | atmosphere | 1e+03 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 398 | 282.53 | wind | 1e+00 | 90 | < th | dose independent | rect. | 6 | 8 |
| 413 | 282.85 | humidity | 9e+01 | 90 | > th | dose independent | rect. | 11 | 5 |
| 423 | 282.92 | wind | 1e+00 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 444 | 283.09 | humidity | 7e+01 | 10 | > th | dose independent | rect. | 7 | 4 |
| 445 | 283.09 | wind | 1e+00 | 30 | < th | dose independent | rect. | 8 | 8 |
| 452 | 283.16 | wind | 1e+00 | 90 | < th | dose independent | rect. | 12 | 1 |
| 458 | 283.17 | wind | 1e+00 | 90 | < th | dose dependent | rect. | 6 | 8 |
| 461 | 283.23 | wind | 1e+00 | 90 | < th | dose independent | rect. | 6 | 11 |
| 521 | 283.69 | precipitation | 1e-01 | 270 | > th | dose independent | rect. | 20 | 3 |
| 522 | 283.69 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 20 | 3 |
| 548 | 283.88 | wind | 1e+00 | 30 | < th | dose dependent | rect. | 8 | 8 |
| 683 | 284.67 | humidity | 7e+01 | 90 | > th | dose independent | rect. | 6 | 10 |
| 689 | 284.73 | wind | 3e+00 | 10 | > th | dose independent | rect. | 10 | 1 |
| 739 | 285.08 | precipitation | 1e-01 | 270 | > th | dose independent | rect. | 20 | 1 |
| 741 | 285.08 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 753 | 285.16 | wind | 3e+00 | 10 | > th | dose dependent | sin | 9 | NA |
| 758 | 285.19 | radiation | 1e+01 | 10 | > th | dose independent | sin | 9 | NA |
| 767 | 285.25 | atmosphere | 1e+03 | 90 | < th | dose independent | rect. | 8 | 6 |
| 769 | 285.26 | radiation | 4e+01 | 270 | < th | dose independent | rect. | 12 | 13 |
| 789 | 285.32 | temperature | 3e+01 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 797 | 285.39 | atmosphere | 1e+03 | 270 | < th | dose independent | rect. | 9 | 1 |
| 800 | 285.42 | humidity | 5e+01 | 90 | > th | dose dependent | rect. | 6 | 10 |
| 801 | 285.43 | radiation | 4e+01 | 30 | < th | dose independent | rect. | 7 | 9 |
| 835 | 285.58 | radiation | 3e+01 | 10 | < th | dose independent | rect. | 7 | 4 |
| 843 | 285.62 | wind | 5e+00 | 90 | > th | dose independent | rect. | 6 | 1 |
| 844 | 285.62 | wind | 5e+00 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 864 | 285.76 | humidity | 7e+01 | 90 | > th | dose independent | rect. | 12 | 22 |
| 901 | 285.86 | atmosphere | 1e+03 | 10 | < th | dose dependent | rect. | 3 | 12 |
| 930 | 285.97 | humidity | 7e+01 | 10 | > th | dose independent | rect. | 15 | 20 |
| 963 | 286.12 | wind | 1e+00 | 30 | < th | dose independent | sin | 20 | NA |
| 969 | 286.16 | radiation | 1e+01 | 10 | > th | dose independent | rect. | 7 | 4 |
| 978 | 286.19 | radiation | 1e+01 | 30 | > th | dose independent | rect. | 7 | 1 |
| 979 | 286.19 | wind | 1e+00 | 10 | < th | dose independent | rect. | 6 | 9 |