BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0556500 Os10g0556500|Os10g0556500
         (205 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0556500                                                      254   2e-68
Os04g0580932                                                       69   2e-12

>Os10g0556500 
          Length = 205

 Score =  254 bits (650), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 139/205 (67%), Positives = 139/205 (67%)

Query: 1   MEAMDKLVQLAESMCQAASLLLGDNXXXXXXXXXXXXTFLNAVALGNVVSVCFHWSRRLL 60
           MEAMDKLVQLAESMCQAASLLLGDN            TFLNAVALGNVVSVCFHWSRRLL
Sbjct: 1   MEAMDKLVQLAESMCQAASLLLGDNDPSDESSPRRPSTFLNAVALGNVVSVCFHWSRRLL 60

Query: 61  TXXXXXXXXXLDLTRSGLVASKSVVPASWXXXXXXXXXXXXXXXXLLAHSGDRVYAGCQQ 120
           T         LDLTRSGLVASKSVVPASW                LLAHSGDRVYAGCQQ
Sbjct: 61  TAAAAPAPPPLDLTRSGLVASKSVVPASWRCPGGRGARPPRHQRRLLAHSGDRVYAGCQQ 120

Query: 121 VGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAPTALDAIDEAVGKLKSVLDNGEGDLD 180
           VGG                             HAPTALDAIDEAVGKLKSVLDNGEGDLD
Sbjct: 121 VGGAPAAARASSSPSTSSPRSQWWSRPPSASPHAPTALDAIDEAVGKLKSVLDNGEGDLD 180

Query: 181 EAALRAEELMAPLESHCGGWWRRLQ 205
           EAALRAEELMAPLESHCGGWWRRLQ
Sbjct: 181 EAALRAEELMAPLESHCGGWWRRLQ 205



>Os04g0580932 
          Length = 189

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/39 (84%), Positives = 35/39 (89%)

Query: 161 IDEAVGKLKSVLDNGEGDLDEAALRAEELMAPLESHCGG 199
           +DEAVGKLKSVLDNGEGDLDE  L+AEELMAPLESH  G
Sbjct: 95  VDEAVGKLKSVLDNGEGDLDEVVLQAEELMAPLESHYSG 133



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,396,642
Number of extensions: 113323
Number of successful extensions: 269
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)