BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0709100 Os03g0709100|AK061596
(131 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0709100 Similar to Basic blue protein (Cusacyanin) (Pl... 206 4e-54
Os03g0709300 Similar to Chemocyanin precursor (Basic blue p... 100 2e-22
Os03g0850900 Similar to Chemocyanin precursor (Basic blue p... 83 5e-17
Os03g0259100 Similar to Basic blue protein (Cusacyanin) (Pl... 81 2e-16
Os02g0731400 Similar to Chemocyanin precursor (Basic blue p... 79 9e-16
Os02g0257100 Cupredoxin domain containing protein 74 3e-14
Os02g0256800 Cupredoxin domain containing protein 70 4e-13
Os06g0266300 65 2e-11
>Os03g0709100 Similar to Basic blue protein (Cusacyanin) (Plantacyanin) (CBP)
Length = 131
Score = 206 bits (524), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/131 (79%), Positives = 104/131 (79%)
Query: 1 MARGRGSAMRGXXXXXXXXXXXSCIFLSGCGVADAATYYVXXXXXXXXXXXXXXXXKKFH 60
MARGRGSAMRG SCIFLSGCGVADAATYYV KKFH
Sbjct: 1 MARGRGSAMRGAVAVAFLAVVVSCIFLSGCGVADAATYYVGDSLGWSLGSGSWPSGKKFH 60
Query: 61 AGDILVFRYLPWMHNVVAVDEDGYADCNPPPFSRYYTSGSDSVRLARGDNFFVCTRYGHC 120
AGDILVFRYLPWMHNVVAVDEDGYADCNPPPFSRYYTSGSDSVRLARGDNFFVCTRYGHC
Sbjct: 61 AGDILVFRYLPWMHNVVAVDEDGYADCNPPPFSRYYTSGSDSVRLARGDNFFVCTRYGHC 120
Query: 121 NLGMKMVVTAV 131
NLGMKMVVTAV
Sbjct: 121 NLGMKMVVTAV 131
>Os03g0709300 Similar to Chemocyanin precursor (Basic blue protein)
(Plantacyanin)
Length = 129
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Query: 1 MARGRGSAMRGXXXXXXXXXXXSCIFLSGCGVADAATYYVXXXXXXXXXXXXXXXXKKFH 60
MA+GRGSA G C+ L G +A++A Y V K+F
Sbjct: 1 MAQGRGSAA-GRRNAAVLAMVLLCVLLHG-ELAESAVYTVGDRGGWGFNSGGWLRGKRFR 58
Query: 61 AGDILVFRYLPWMHNVVAVDEDGYADCNPPPFSRYYTSGSDSVRLARGDNFFVCTRYGHC 120
AGD+LVF+Y P HNVVAV+ GY C+ P ++ Y SGSD V LARG N+F+C+ GHC
Sbjct: 59 AGDVLVFKYSPSAHNVVAVNAAGYKSCSAPRGAKVYKSGSDRVTLARGTNYFICSFPGHC 118
Query: 121 NLGMKMVVTA 130
GMK+ VTA
Sbjct: 119 QAGMKIAVTA 128
>Os03g0850900 Similar to Chemocyanin precursor (Basic blue protein)
(Plantacyanin)
Length = 125
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 57 KKFHAGDILVFRYLPWMHNVVAVDEDGYADCNPPP-FSRYYTSGSDSVRLARGDNFFVCT 115
K+F AGD+LVF+Y HNVVAV+ GY C P ++ Y SG+D V LARG N+F+C
Sbjct: 50 KRFKAGDVLVFKYDSSAHNVVAVNAAGYKGCTAAPRGAKVYKSGNDRVTLARGTNYFICN 109
Query: 116 RYGHCNLGMKMVVTAV 131
GHC GMK+ VTA
Sbjct: 110 FPGHCQAGMKIAVTAA 125
>Os03g0259100 Similar to Basic blue protein (Cusacyanin) (Plantacyanin) (CBP)
Length = 120
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 57 KKFHAGDILVFRYLPWMHNVVAVDEDGYADCNPPPFSRYYTSGSDSVRLARGDNFFVCTR 116
K F AGD+LVF Y P +HNVVAVD GY+ C Y+SG+D + L RG ++F+C+
Sbjct: 48 KNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRES--GTKYSSGNDRITLGRGTSYFICSF 105
Query: 117 YGHCNLGMKMVVTA 130
GHC GMKM VTA
Sbjct: 106 SGHCGAGMKMAVTA 119
>Os02g0731400 Similar to Chemocyanin precursor (Basic blue protein)
(Plantacyanin)
Length = 134
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 2 ARGRGSAMRGXXXXXXXXXXXSCIFL--SGCGVADAATYYVXXXXXXXXXXXXXXXXKKF 59
ARGRGSA G FL S +A+AA Y V K F
Sbjct: 3 ARGRGSACNGAAVLGAAAAVVIVGFLVMSAAPLAEAARYTVGDSSGWRFYAEGWAKGKTF 62
Query: 60 HAGDILVFRYLPWMHNVVAVDEDGYADCNPPPFSRYYTSGSDSVRLARGDNFFVCTRYGH 119
AGD+L F+Y +H+V AVD Y C P R SG D V L +G ++F+CT GH
Sbjct: 63 RAGDVLEFKYNAVVHDVAAVDLAAYRSCTVPKGVRKMRSGRDKVTLRKGTHYFICTEPGH 122
Query: 120 CNLGMKMVVTAV 131
C GMK+ V A+
Sbjct: 123 CKAGMKLAVRAI 134
>Os02g0257100 Cupredoxin domain containing protein
Length = 122
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 43/73 (58%)
Query: 57 KKFHAGDILVFRYLPWMHNVVAVDEDGYADCNPPPFSRYYTSGSDSVRLARGDNFFVCTR 116
K F GD+LVF+Y P MHNV+ VD GY C + Y SG+D + LA G FF+C
Sbjct: 48 KAFKVGDVLVFKYSPMMHNVLQVDHAGYDGCKVGAGDKKYASGNDRITLAAGKVFFICGF 107
Query: 117 YGHCNLGMKMVVT 129
GHC GMK+ V
Sbjct: 108 PGHCANGMKIAVA 120
>Os02g0256800 Cupredoxin domain containing protein
Length = 126
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 43/72 (59%)
Query: 57 KKFHAGDILVFRYLPWMHNVVAVDEDGYADCNPPPFSRYYTSGSDSVRLARGDNFFVCTR 116
K+ GD LVF+Y +HNVV VD GY C S+ Y SG D ++LA G+ FF+C+
Sbjct: 49 KRIQPGDELVFKYDAKIHNVVEVDRAGYGGCTVTGPSKVYNSGDDRIKLAGGEAFFICSI 108
Query: 117 YGHCNLGMKMVV 128
HC GMK+ V
Sbjct: 109 RDHCTAGMKVKV 120
>Os06g0266300
Length = 417
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 33 ADAATYYVXXXXXXXXXXXXXXXXKKFHAGDILVFRYLPWMHNVVAVDEDGYADCNPP-- 90
A TYYV K F+AGD+LVF+Y H+V V GY C P
Sbjct: 39 AGGKTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHDVAVVGGKGYRRCKVPRN 98
Query: 91 PFSRYYTSGSDSVRLARGDNFFVCTRYGHCNLGMKMVVTAV 131
+ +G D V L RG+N+F+C GHC+ GMK+ V A+
Sbjct: 99 KDTAVLRTGYDQVTLRRGNNYFICGMPGHCDAGMKLAVKAL 139
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.141 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,920,050
Number of extensions: 129561
Number of successful extensions: 365
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 8
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 150 (62.4 bits)