Os02g0256800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os02g0256800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 213.67 | 0.681 | 1.7 | -2.62 | 0.183 | 154 | 0.878 | 326 | -0.0784 | 6.45 | 15 | 90 | -- | -- |
| 222.42 | 0.7 | 3.05 | 0.0885 | 0.18 | 0.284 | 0.879 | -- | -0.105 | 6.05 | 15 | 90 | -- | -- |
| 215.59 | 0.684 | 1.7 | -2.62 | 0.186 | 155 | -- | 326 | -0.081 | 6.52 | 15.01 | 91 | -- | -- |
| 218.93 | 0.694 | 3.04 | 0.208 | 0.196 | -0.841 | -- | -- | -0.0741 | 7.64 | 17.3 | 141 | -- | -- |
| 217.39 | 0.687 | 1.7 | -2.63 | -- | 155 | -- | 326 | -0.0771 | -- | 15.01 | 93 | -- | -- |
| 222.58 | 0.699 | 3.05 | 0.0997 | 0.179 | -- | 0.885 | -- | -0.102 | 5.99 | -- | -- | -- | -- |
| 224.2 | 0.701 | 3.05 | 0.11 | 0.196 | -- | -- | -- | -0.104 | 7.35 | -- | -- | -- | -- |
| 220.93 | 0.692 | 3.05 | 0.227 | -- | -1 | -- | -- | -0.068 | -- | 17.25 | 131 | -- | -- |
| 220.02 | 0.695 | 3.05 | -- | 0.197 | -0.759 | -- | -- | -0.0992 | 7.55 | 17.2 | 132 | -- | -- |
| 226.25 | 0.703 | 3.06 | 0.113 | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
| 224.52 | 0.701 | 3.05 | -- | 0.197 | -- | -- | -- | -0.116 | 7.32 | -- | -- | -- | -- |
| 222.1 | 0.696 | 3.06 | -- | -- | -0.757 | -- | -- | -0.0965 | -- | 17.25 | 131 | -- | -- |
| 226.58 | 0.703 | 3.06 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 208.39 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 10 | 2 |
| 2 | 208.72 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 3 | 208.76 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 11 | 1 |
| 7 | 209.50 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 11 | 1 |
| 13 | 209.88 | radiation | 30.0 | 30 | < th | dose independent | rect. | 11 | 2 |
| 24 | 210.31 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 38 | 210.55 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 7 | 6 |
| 43 | 210.58 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 11 | 15 |
| 54 | 210.81 | humidity | 70.0 | 90 | > th | dose independent | rect. | 11 | 1 |
| 120 | 211.60 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 170 | 212.06 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 171 | 212.06 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 179 | 212.17 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 12 | 4 |
| 184 | 212.21 | radiation | 1.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 192 | 212.28 | temperature | 15.0 | 720 | > th | dose independent | rect. | 4 | 10 |
| 194 | 212.29 | wind | 7.0 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 195 | 212.29 | wind | 7.0 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 221 | 212.50 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 222 | 212.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 223 | 212.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 226 | 212.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 227 | 212.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 239 | 212.66 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 1 | 15 |
| 246 | 212.69 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 1 | 20 |
| 253 | 212.74 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 257 | 212.77 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 259 | 212.77 | wind | 7.0 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 261 | 212.80 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 4 |
| 279 | 212.89 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 1 |
| 293 | 212.93 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 299 | 212.95 | humidity | 70.0 | 90 | > th | dose independent | rect. | 10 | 16 |
| 304 | 212.97 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 311 | 212.97 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 329 | 213.03 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 330 | 213.03 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 335 | 213.05 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 366 | 213.11 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 1 | 15 |
| 370 | 213.12 | wind | 7.0 | 720 | > th | dose dependent | rect. | 7 | 1 |
| 377 | 213.13 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 10 |
| 383 | 213.15 | humidity | 90.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 389 | 213.15 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 397 | 213.17 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 398 | 213.17 | temperature | 20.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 399 | 213.18 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 1 | 6 |
| 400 | 213.18 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 401 | 213.18 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 403 | 213.18 | wind | 7.0 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 411 | 213.19 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 9 | 3 |
| 429 | 213.21 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 11 | 1 |
| 430 | 213.21 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 457 | 213.24 | atmosphere | 1015.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 499 | 213.29 | wind | 9.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 523 | 213.31 | wind | 7.0 | 720 | > th | dose independent | rect. | 3 | 5 |
| 558 | 213.34 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 1 | 12 |
| 559 | 213.34 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 13 |
| 567 | 213.35 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 570 | 213.35 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 8 | 2 |
| 575 | 213.35 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 8 | 2 |
| 583 | 213.36 | wind | 7.0 | 720 | > th | dose independent | rect. | 7 | 1 |
| 616 | 213.38 | atmosphere | 1015.0 | 720 | > th | dose independent | sin | 5 | NA |
| 618 | 213.38 | atmosphere | 1015.0 | 720 | > th | dose independent | rect. | 23 | 5 |
| 639 | 213.38 | atmosphere | 1015.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 640 | 213.38 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 644 | 213.38 | atmosphere | 1015.0 | 720 | > th | dose dependent | rect. | 23 | 3 |
| 657 | 213.38 | atmosphere | 1015.0 | 720 | > th | dose dependent | rect. | 23 | 22 |
| 664 | 213.39 | atmosphere | 1015.0 | 720 | > th | dose independent | rect. | 1 | 20 |
| 676 | 213.40 | wind | 9.0 | 720 | > th | dose independent | rect. | 9 | 1 |
| 697 | 213.41 | atmosphere | 1015.0 | 720 | > th | dose independent | sin | 1 | NA |
| 731 | 213.42 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 738 | 213.43 | humidity | 90.0 | 270 | > th | dose independent | rect. | 9 | 3 |
| 755 | 213.44 | atmosphere | 1015.0 | 720 | > th | dose dependent | sin | 1 | NA |
| 757 | 213.44 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 8 | 4 |
| 764 | 213.45 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 20 | 7 |
| 767 | 213.45 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 773 | 213.45 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 827 | 213.48 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 847 | 213.50 | humidity | 90.0 | 10 | > th | dose independent | rect. | 9 | 3 |
| 866 | 213.51 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 6 | 1 |
| 870 | 213.51 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 878 | 213.52 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 15 | 3 |
| 880 | 213.52 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 881 | 213.52 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 12 | 5 |
| 904 | 213.54 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 912 | 213.55 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 11 | 15 |
| 979 | 213.59 | temperature | 15.0 | 720 | < th | dose independent | sin | 21 | NA |
| 995 | 213.59 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 12 | 10 |