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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0709100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Basic blue protein (Cusacyanin) (Plantacyanin) (CBP).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0244) R2 : 0.00248
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0547 (0.0515) R2dN8 : 0.0032 R2N8 : 0.00248
σ : 0.46
deviance : 97.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.85 0.428 2.37 4.51 0.0819 -68.5 -0.505 418 -0.0515 2.76 994.6 674 -- --
95.75 0.459 3.12 -0.00884 0.118 0.418 -0.406 -- -0.0579 2.95 995 338 -- --
83.69 0.426 2.37 4.46 0.0878 -67.6 -- 413 -0.0489 3.98 994.5 676 -- --
93.98 0.452 3.11 -0.00732 0.118 0.623 -- -- -0.0398 3.13 997.2 824 -- --
84.11 0.427 2.37 4.47 -- -67.6 -- 413 -0.0465 -- 994.5 678 -- --
95.95 0.459 3.12 -0.0059 0.113 -- -0.419 -- -0.0592 2.9 -- -- -- --
96.52 0.46 3.12 0.00358 0.116 -- -- -- -0.0569 3.57 -- -- -- --
94.51 0.453 3.11 -0.02 -- 0.679 -- -- -0.042 -- 997.2 814 -- --
93.93 0.451 3.11 -- 0.0998 0.648 -- -- -0.0443 3.76 997.2 809 -- --
97.27 0.461 3.12 0.00844 -- -- -- -- -0.0538 -- -- -- -- --
96.52 0.46 3.12 -- 0.116 -- -- -- -0.0573 3.57 -- -- -- --
94.52 0.453 3.11 -- -- 0.677 -- -- -0.0401 -- 997.2 814 -- --
97.27 0.46 3.12 -- -- -- -- -- -0.0547 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.56 atmosphere 1000 90 < th dose dependent rect. 24 2
2 82.57 atmosphere 1000 10 < th dose independent rect. 1 1
10 82.57 atmosphere 1000 10 < th dose dependent rect. 1 1
19 82.58 temperature 25 30 > th dose dependent rect. 1 1
22 82.59 temperature 25 30 > th dose independent rect. 1 1
31 82.86 atmosphere 995 720 < th dose independent rect. 14 1
72 82.86 atmosphere 995 720 < th dose dependent rect. 14 1
123 83.69 atmosphere 995 720 < th dose independent sin 6 NA
128 84.21 atmosphere 995 720 < th dose dependent sin 7 NA
162 85.37 atmosphere 995 720 > th dose independent sin 2 NA
218 86.54 temperature 25 90 > th dose dependent rect. 24 6
228 86.75 atmosphere 995 720 > th dose independent no NA NA
259 87.22 atmosphere 995 720 < th dose independent no NA NA
484 87.59 atmosphere 995 720 < th dose dependent no NA NA
705 87.90 atmosphere 995 720 > th dose independent sin 14 NA
736 88.41 temperature 15 270 > th dose independent rect. 4 23
739 88.57 temperature 15 1440 > th dose independent rect. 12 15
744 88.76 temperature 15 30 > th dose independent rect. 7 23
745 88.78 temperature 15 1440 > th dose independent rect. 21 1
747 88.82 humidity 90 1440 > th dose dependent rect. 11 3
748 88.83 temperature 15 720 > th dose independent rect. 7 12
750 88.86 temperature 15 720 > th dose independent rect. 7 15
751 88.86 temperature 15 1440 > th dose independent rect. 6 19
754 88.93 atmosphere 1015 1440 < th dose independent rect. 3 3
758 88.98 temperature 15 1440 > th dose independent rect. 6 21
759 89.00 temperature 15 720 > th dose independent rect. 10 9
763 89.03 temperature 15 720 > th dose independent rect. 14 9
764 89.03 temperature 15 1440 > th dose independent rect. 9 12
773 89.13 temperature 25 10 > th dose independent rect. 5 1
775 89.14 temperature 15 1440 > th dose independent rect. 11 3
781 89.17 temperature 20 720 < th dose dependent rect. 11 7
783 89.18 humidity 90 1440 > th dose independent rect. 11 3
784 89.18 temperature 15 1440 > th dose independent rect. 11 6
790 89.20 temperature 15 1440 < th dose dependent rect. 17 10
797 89.21 temperature 15 1440 > th dose independent rect. 4 17
798 89.21 temperature 15 1440 < th dose dependent sin 15 NA
802 89.22 temperature 15 1440 > th dose independent rect. 18 3
812 89.23 temperature 15 1440 < th dose independent sin 18 NA
817 89.23 temperature 15 1440 > th dose independent rect. 4 19
821 89.24 temperature 15 1440 < th dose independent rect. 18 8
827 89.24 temperature 15 1440 < th dose independent rect. 11 15
830 89.24 temperature 15 1440 < th dose dependent sin 19 NA
832 89.24 temperature 15 1440 < th dose dependent rect. 20 6
836 89.24 temperature 15 1440 < th dose dependent rect. 6 19
851 89.25 temperature 15 1440 < th dose dependent rect. 9 16
894 89.28 temperature 15 270 > th dose independent sin 19 NA
903 89.28 temperature 15 270 > th dose independent rect. 6 23
905 89.28 temperature 20 720 < th dose dependent rect. 12 1
913 89.29 temperature 15 90 > th dose independent sin 9 NA
915 89.29 temperature 15 90 > th dose independent sin 21 NA
934 89.30 atmosphere 1015 1440 < th dose independent rect. 1 5
949 89.31 temperature 15 90 > th dose independent sin 17 NA
950 89.31 temperature 15 90 > th dose independent no NA NA
952 89.31 temperature 15 90 < th dose independent sin 7 NA
1000 89.31 temperature 15 90 < th dose independent no NA NA