BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0625900 Os03g0625900|AK101109
(511 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0625900 WD40-like domain containing protein 805 0.0
Os05g0552300 Similar to Guanine nucleotide-binding protein ... 91 2e-18
Os01g0686800 Guanine nucleotide-binding protein beta subuni... 82 9e-16
Os03g0685600 WD40-like domain containing protein 73 5e-13
AK111235 72 1e-12
Os10g0104500 Similar to Notchless-related 72 1e-12
Os11g0594200 Similar to Notchless gene homolog 72 1e-12
Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3... 71 2e-12
Os04g0592700 Quinonprotein alcohol dehydrogenase-like domai... 68 1e-11
Os03g0339100 Similar to PRL1 protein 68 1e-11
Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding ... 67 2e-11
Os03g0355200 WD40-like domain containing protein 67 2e-11
AK108888 66 6e-11
>Os03g0625900 WD40-like domain containing protein
Length = 511
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/496 (82%), Positives = 409/496 (82%)
Query: 16 ATSRGRGGGDEDPFFESEPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 75
ATSRGRGGGDEDPFFESEPK
Sbjct: 16 ATSRGRGGGDEDPFFESEPKRRRGGGRDEDIESEDSDLEGVAAAAAGGVGDDGEEEEEEE 75
Query: 76 XXXXXXXXKKMRIAKELLKKVTXXXXXXXXXXXXXXXXXXXXXXXXXXILLKRQFEESGR 135
KKMRIAKELLKKVT ILLKRQFEESGR
Sbjct: 76 EEQETAGEKKMRIAKELLKKVTDAARRRREDDEDEDEGEEAGRRRVADILLKRQFEESGR 135
Query: 136 KRMELADRILQPDPEDGFKMLVKHRQPVTAVVLSKDSDKGFSASKDGVIVHWDVETGKSE 195
KRMELADRILQPDPEDGFKMLVKHRQPVTAVVLSKDSDKGFSASKDGVIVHWDVETGKSE
Sbjct: 136 KRMELADRILQPDPEDGFKMLVKHRQPVTAVVLSKDSDKGFSASKDGVIVHWDVETGKSE 195
Query: 196 KYLWPSENVLVSHHAKPPLSAKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQ 255
KYLWPSENVLVSHHAKPPLSAKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQ
Sbjct: 196 KYLWPSENVLVSHHAKPPLSAKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQ 255
Query: 256 AFSGHRGAISCLSFGPDSSELFSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKD 315
AFSGHRGAISCLSFGPDSSELFSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKD
Sbjct: 256 AFSGHRGAISCLSFGPDSSELFSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKD 315
Query: 316 RLLTVARDRTMHLWKIPEESQLLFRAPATASLECCCFIDDKEFLTGSDDGSVELWSIMRK 375
RLLTVARDRTMHLWKIPEESQLLFRAPATASLECCCFIDDKEFLTGSDDGSVELWSIMRK
Sbjct: 316 RLLTVARDRTMHLWKIPEESQLLFRAPATASLECCCFIDDKEFLTGSDDGSVELWSIMRK 375
Query: 376 KPTHIIRNAHPVFRXXXXXXXXXXXXXGIHKPESVSSAQSWVSAIAARRGSDLAASGAAN 435
KPTHIIRNAHPVFR GIHKPESVSSAQSWVSAIAARRGSDLAASGAAN
Sbjct: 376 KPTHIIRNAHPVFRNNLNSLENNVEENGIHKPESVSSAQSWVSAIAARRGSDLAASGAAN 435
Query: 436 GSVRLWAIEPDSKGIRPLFSLRLDGFVNSLAIPKSGRFIVAGVGQEPRLGRWGRVRSAQN 495
GSVRLWAIEPDSKGIRPLFSLRLDGFVNSLAIPKSGRFIVAGVGQEPRLGRWGRVRSAQN
Sbjct: 436 GSVRLWAIEPDSKGIRPLFSLRLDGFVNSLAIPKSGRFIVAGVGQEPRLGRWGRVRSAQN 495
Query: 496 GVVIHPIRLKEESEDL 511
GVVIHPIRLKEESEDL
Sbjct: 496 GVVIHPIRLKEESEDL 511
>Os05g0552300 Similar to Guanine nucleotide-binding protein beta subunit-like
protein (GPB-LR) (RWD)
Length = 336
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 31/239 (12%)
Query: 149 PEDG--FKMLVKHRQPVTAVVLSKDSDKGFSASKDGVIVHWDVETGKSEKYLWPSENVLV 206
PE G ++ L H V VVLS D S S DG + WD+ TG++ + V
Sbjct: 63 PEYGVSYRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGRTTRR-------FV 115
Query: 207 SHHAKPPLSAKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQ------AFSGH 260
H +K VL++A S D R + S D I LW+ A GH
Sbjct: 116 GH----------TKDVLSVAFSVDNRQIVSAARDNTIKLWNTLGECKYTIGGDHGAGEGH 165
Query: 261 RGAISCLSFGPD--SSELFSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKDRLL 318
G +SC+ F P+ + + SGS+DR + WN + L GH N + A+S D L
Sbjct: 166 TGWVSCVRFSPNPMAPTIVSGSWDRSVKVWNLTNCKLRTKLEGH-NGYVNAVAVSPDGSL 224
Query: 319 TVA--RDRTMHLWKIPEESQLLFRAPATASLECCCFIDDKEFLTGSDDGSVELWSIMRK 375
+ +D T LW + E ++L++ A A + CF ++ +L + + SV++W + K
Sbjct: 225 CASGGKDGTTLLWDL-TEGKMLYKLDAGAIIHSLCFSPNRYWLCAATEDSVKIWDLESK 282
>Os01g0686800 Guanine nucleotide-binding protein beta subunit-like protein
(GPB-LR) (RWD)
Length = 334
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 32/244 (13%)
Query: 153 FKMLVKHRQPVTAVVLSKDSDKGFSASKDGVIVHWDVETGKSEKYLWPSENVLVSHHAKP 212
F+ L H V VVLS D S S DG + WD+ TG + + V H
Sbjct: 68 FRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLSTGVTTRR-------FVGH---- 116
Query: 213 PLSAKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSR------EHIQAFSGHRGAISC 266
K VL++A S D R + S DR I LW+ + GH G +SC
Sbjct: 117 ------DKDVLSVAFSVDNRQIVSASRDRTIKLWNTLGECKYTIGGDLGGGEGHNGWVSC 170
Query: 267 LSFGPDSSE--LFSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKDRLLTVA--R 322
+ F P++ + + SGS+DR + WN + L GH V + A+S D L + +
Sbjct: 171 VRFSPNTFQPTIVSGSWDRTVKVWNLTNCKLRCNLEGHGGYVNAV-AVSPDGSLCASGGK 229
Query: 323 DRTMHLWKIPEESQLLFRAPATASLECCCFIDDKEFLTGSDDGSVELWSIMRKKPTHIIR 382
D LW + E + L+ A + + CF ++ +L + S+++W + K HI++
Sbjct: 230 DGVTLLWDLAEGKR-LYSLDAGSIIHSLCFSPNRYWLCAATQDSIKIWDLESK---HIVQ 285
Query: 383 NAHP 386
+ P
Sbjct: 286 DLKP 289
>Os03g0685600 WD40-like domain containing protein
Length = 394
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 218 RSKQVLALAVS-ADGRYLASGGLDRHIHLWDVRSREHIQAFSGHRGAISCLSFGPDSSEL 276
+ ++ A+A S D +ASGG D LW + S E + +GH + ++F D + L
Sbjct: 63 HTDEIFAVACSPTDASLVASGGKDDRGFLWKIGSAEDVLELAGHTDTVCTVAFSSDGNLL 122
Query: 277 FSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKDRLLTV-ARDRTMHLWKIPEES 335
SGSFD +I WN RT L G + + + L+ + D + +W +
Sbjct: 123 ASGSFDGRINVWNTATRTLQGTLEGSGSGFEWLKWHPRGHLIIAGSEDCNLWMWNADHNA 182
Query: 336 QLLFRAPATASLECCCFI-DDKEFLTGSDDGSVELWSIMRKKPTHIIR 382
L A ++++ C F D K TGSDD S+ +W + H++R
Sbjct: 183 ILNTFAGHSSTVTCGDFTPDGKLICTGSDDASLRIWDPRTAQSRHVVR 230
>AK111235
Length = 351
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 110/256 (42%), Gaps = 36/256 (14%)
Query: 135 RKRMELADRILQPDPEDGFKMLVK-----------HRQPVTAVVLSKDSDKGFSASKDGV 183
RK+ ELAD L+ D + L + H + A+ S D SAS+DG
Sbjct: 29 RKKDELADTTLRDVARDRVEALPRLTMKTKRTLKGHLAKIYAMHWSTDRRHLVSASQDGK 88
Query: 184 IVHWDVETGKSEKYLWPSENVLVSHHAKPPLSAKRSKQVLALAVSADGRYLASGGLDRHI 243
++ WD T HA P RS V+ A S G Y+A GGLD
Sbjct: 89 LIIWDAYTTNKV-------------HAIPL----RSSWVMTCAYSPSGNYVACGGLDNIC 131
Query: 244 HLWDVRSREH----IQAFSGHRGAISCLSFGPDSSELFSGSFDRKIMQWNAEDRTYMNCL 299
++++ +RE + SGH G +SC F D + + S D + W+ E + ++
Sbjct: 132 SIYNLSAREGPTRVARELSGHSGYLSCCRFISD-KRIPTSSGDMTCVLWDLETGSKVHEF 190
Query: 300 FGHQNEV--LTMDALSKDRLLTVARDRTMHLWKIPEESQLLFRAPATASLECCCFI-DDK 356
H +V L+++ L ++ ++ A D LW I ++ + A + + F +
Sbjct: 191 ADHLGDVMSLSINPLDHNQFVSGACDAFAKLWDIRQQKCVQTFAAHDSDINAIQFFPNGN 250
Query: 357 EFLTGSDDGSVELWSI 372
F TGSDD S L+ I
Sbjct: 251 AFGTGSDDASCRLFDI 266
>Os10g0104500 Similar to Notchless-related
Length = 480
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 7/168 (4%)
Query: 216 AKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQAFSGHRGAISCLSFGPDSSE 275
A ++ VLA++ S DGR LASG D + WD+ ++ + GH+ + C+++ PD +
Sbjct: 112 AGHTEAVLAVSFSPDGRCLASGSGDTTVRFWDLSTQTPLFTCKGHKNWVLCIAWSPDGNH 171
Query: 276 LFSGSFDRKIMQWNAEDRTYMNC-LFGHQNEVLTMD------ALSKDRLLTVARDRTMHL 328
L SGS +++ W+ + + L GH+ + + R ++ ++D +
Sbjct: 172 LVSGSKSGELILWDPKTGKQLGTPLTGHRKWITAVSWEPVHLQSPCRRFVSTSKDGDARI 231
Query: 329 WKIPEESQLLFRAPATASLECCCFIDDKEFLTGSDDGSVELWSIMRKK 376
W + ++ T S+ C + D TGS+D S+++W + K
Sbjct: 232 WDMTTRKCVIALTGHTNSVTCVKWGGDGLIYTGSEDCSIKVWETSQGK 279
>Os11g0594200 Similar to Notchless gene homolog
Length = 480
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 9/169 (5%)
Query: 216 AKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQAFSGHRGAISCLSFGPDSSE 275
A ++ VLA++ S DGR LASG D + WD+ ++ + GH+ + C+++ PD +
Sbjct: 112 AGHTEAVLAVSFSPDGRCLASGSGDTTVRFWDLNTQTPLFTCKGHKNWVLCIAWSPDGNH 171
Query: 276 LFSGSFDRKIMQWNAEDRTYMNC-LFGHQN-------EVLTMDALSKDRLLTVARDRTMH 327
L SGS +++ W+ + + L GH+ E + + A + R ++ ++D
Sbjct: 172 LVSGSKSGELILWDPKTGKQLGTPLTGHRKWITAVSWEPVHLQAPCR-RFVSASKDGDAR 230
Query: 328 LWKIPEESQLLFRAPATASLECCCFIDDKEFLTGSDDGSVELWSIMRKK 376
+W I ++ T S+ C + D TGS+D +++W + K
Sbjct: 231 IWDITTRKCVIALTGHTNSVTCVKWGGDGLIYTGSEDCLIKVWETSQGK 279
>Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
(WD-repeat protein BIG-3)
Length = 324
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 22/191 (11%)
Query: 153 FKMLVKHRQPVTAVVLSKDSDKGFSASKDGVIVHWDVETGKSEKYLWPSENVLVSHHAKP 212
++L H +PVT+V ++D S S DG+ WD TG K L E+ P
Sbjct: 148 LRVLPAHSEPVTSVDFNRDGAMIVSGSYDGLCRIWDSATGHCIKTLIDDES--------P 199
Query: 213 PLSAKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQAFSGHRGAISCLSFG-- 270
P+S + S +G+++ + LD + LW+ + + ++ ++GH C+
Sbjct: 200 PVSFAK--------FSPNGKFVLAATLDSKLRLWNFSAGKFLKTYTGHVNTKYCIPAAFS 251
Query: 271 -PDSSELFSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKDRLLT---VARDRTM 326
+ + SGS D+ + W+ + R + L GH + V+ + + ++ + D+T+
Sbjct: 252 ITNGKYIVSGSEDKCVYIWDLQSRKILQKLEGHTDTVIAVSCHPNENMIASGGLDGDKTV 311
Query: 327 HLWKIPEESQL 337
+W EE Q+
Sbjct: 312 KVWVQKEEDQM 322
>Os04g0592700 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 891
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 100/236 (42%), Gaps = 40/236 (16%)
Query: 159 HRQPVTAVVLSKDSDKGFSASKDGVIVHWDVETGKSEKYLWPSENVLVSHHAKPPLSAKR 218
+ VTA+ LS DS F+A +I WD+ + + W H P
Sbjct: 76 ENEAVTALALSPDSRLLFTAGHSRLIRVWDLASRTCTRS-WKG-------HDGP------ 121
Query: 219 SKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQAFSGHRGAISCLSFGPDSSE--L 276
+ A+A A G LA+ G D+ + +WDV F GH G ++ + F D L
Sbjct: 122 ---IRAMACHASGGLLATAGADKKVCVWDVDGGFCTHFFRGHAGVVTTVMFHKDPKRLLL 178
Query: 277 FSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKD--RLLTVARDRTMHLWKIPEE 334
FSGS D + WN E + + L H + V ++ ALS+D LL+ RD+ +++W + +
Sbjct: 179 FSGSEDATVRVWNLESKKCVAVLKEHFSAVTSL-ALSEDGQTLLSAGRDKIVNVWDVRKY 237
Query: 335 SQ------------LLFRAPATASLECCC------FIDDKEFLTGSDDGSVELWSI 372
+ + F P + L C D FLT + G V +W +
Sbjct: 238 NSKKTIPAFEMIEDVSFIGPGSNLLSCLGEPANIKRKTDGYFLTVGERGVVRIWCL 293
>Os03g0339100 Similar to PRL1 protein
Length = 472
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 149 PEDGFKMLVKHRQPVTAVVLSKDSDKGFSASKDGVIVHWDVETGKSEKYLWPSENVLVSH 208
P ++++ H V ++ ++ + S D I WD+ +G + L
Sbjct: 151 PWKNYRVISGHLGWVRSIAFDPSNEWFCTGSADRTIKIWDLASGTLKLTL---------- 200
Query: 209 HAKPPLSAKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQAFSGHRGAISCLS 268
+Q+ LAVS YL S G D+ + WD+ + I+++ GH + CL+
Sbjct: 201 -------TGHIEQIRGLAVSQRHTYLFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLA 253
Query: 269 FGPDSSELFSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKD-RLLTVARDRTMH 327
P L +G D W+ + +++ L GH N V ++ A D +++T + D T+
Sbjct: 254 LHPTIDILLTGGRDSVCRVWDIRTKAHVSALTGHDNTVCSVFARPTDPQVVTGSHDSTIK 313
Query: 328 LWKI 331
W +
Sbjct: 314 FWDL 317
>Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP)
(U5 snRNP- specific 40 kDa protein) (38 kDa splicing
factor)
Length = 343
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 35/225 (15%)
Query: 153 FKMLVKHRQPVTAVVLSKDSDKGFSASKDGVIVHWDVETGKSEKYL-------------- 198
+ +L H+ V + + D + SAS D + WDVETGK K +
Sbjct: 89 YMVLRGHKNAVLDLQWTTDGTQIISASPDKTVRVWDVETGKQVKKMAEHSSFVNSCCPAR 148
Query: 199 -WPSENVLVSHHAKPPLSAKRSK----------QVLALAVSADGRYLASGGLDRHIHLWD 247
WP V S L R + Q+ A++ S + +GGLD + WD
Sbjct: 149 KWPPLVVSGSDDGTAKLWDLRQRGAIQTLPDKYQITAVSFSEAADKVFTGGLDNDVKWWD 208
Query: 248 VRSREHIQAFSGHRGAISCLSFGPDSSELFSGSFDRKIMQWN----AEDRTYMNCLFGHQ 303
+R E + GH+ I+ + PD S L + + D ++ W+ A + + L GHQ
Sbjct: 209 LRKNEVTEYLKGHQDMITGMQLSPDGSYLLTNAMDNELKIWDLRPYAPENRNIKTLTGHQ 268
Query: 304 N----EVLTMDALSKDRLLTV-ARDRTMHLWKIPEESQLLFRAPA 343
+ +L +R +T + DR +++W ++L++ P
Sbjct: 269 HNFEKNLLKCSWSPDNRKVTAGSADRMVYIWDTTSR-RILYKLPG 312
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 214 LSAKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQAFSGHRGAISCLSFGPDS 273
LSA R LA + L GG R L I +GH+ A+ C+ F P
Sbjct: 11 LSAPRPGMELANIQQHPNQALGPGGKQRTSSL-----EAPIMLLTGHQSAVYCMKFNPAG 65
Query: 274 SELFSGSFDRKIMQW--NAEDRTYMNCLFGHQNEVLTMDALSK-DRLLTVARDRTMHLWK 330
+ + SGS D+ I W + + + YM L GH+N VL + + ++++ + D+T+ +W
Sbjct: 66 TVIASGSHDKDIFLWYVHGDCKNYM-VLRGHKNAVLDLQWTTDGTQIISASPDKTVRVWD 124
Query: 331 IPEESQLLFRAPATASLECCCFIDD--KEFLTGSDDGSVELWSIMRK 375
+ Q+ A ++ + CC ++GSDDG+ +LW + ++
Sbjct: 125 VETGKQVKKMAEHSSFVNSCCPARKWPPLVVSGSDDGTAKLWDLRQR 171
>Os03g0355200 WD40-like domain containing protein
Length = 131
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 219 SKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQAFSGHRGAISCLSFGP-DSSELF 277
S QVL ++ S +G +A+G D +WD+R++ + + H+ IS + F P + L
Sbjct: 5 SFQVLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEGYYLA 64
Query: 278 SGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKD--RLLTVARDRTMHLWKIPEES 335
+ S+D K W+A D + L H+++V ++D +S D +++TV+ DRT+ +W +
Sbjct: 65 TSSYDTKAALWSARDYKPIKSLVAHESKVTSLD-ISGDGQQIVTVSHDRTIKIWSCRSRA 123
Query: 336 Q 336
Q
Sbjct: 124 Q 124
>AK108888
Length = 315
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 27/250 (10%)
Query: 135 RKRMELADRILQPDPEDGF--KMLVKHRQPVTAVVLSKDSDKGFSASKDGVIVHWDVETG 192
R + + I + GF + L H V+ V +S D S S D + W++ TG
Sbjct: 39 RDKTLITWEITREQGNYGFAKRALKGHSHFVSDVAISSDGQWAVSGSWDKTLRLWELNTG 98
Query: 193 KSEKYLWPSENVLVSHHAKPPLSAKRSKQVLALAVSADGRYLASGGLDRHIHLWDVRSR- 251
S+ + V H K VL++A S D + SG D+ I LW++
Sbjct: 99 VSKAF--------VDHQ----------KDVLSVAFSPDNTKIISGSRDKTIKLWNILGEC 140
Query: 252 EHIQAFSGHRGAISCLSFGPDSSE--LFSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTM 309
++ GH +SC+ F P + + + + +DR + W+ L GH + T+
Sbjct: 141 KYTLTEQGHADWVSCVRFLPSAKKPVIVTAGWDRLVKVWDLSKWKLQTNLVGHTGVINTI 200
Query: 310 DALSKDRLLTVA--RDRTMHLWKIPEESQLLFRAPATASLECCCFIDDKEFLTGSDDGSV 367
++ D L + +D LW + ++ + L+ AT + F + +L + S+
Sbjct: 201 -TIAPDGSLCASGGKDGVAMLWDL-KKGEHLYSLDATDPINALVFHPTRYWLCAATQKSI 258
Query: 368 ELWSIMRKKP 377
++W++ K+P
Sbjct: 259 KIWNLESKQP 268
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,864,704
Number of extensions: 578427
Number of successful extensions: 2553
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 2509
Number of HSP's successfully gapped: 15
Length of query: 511
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 406
Effective length of database: 11,553,331
Effective search space: 4690652386
Effective search space used: 4690652386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)