Os03g0625900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0625900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	8.45	(0.0291)	R²	:	0.747
β₁	:	1.18	(0.107)	R²_dD	:	0.0706	R²_D	:	0.052
β₂	:	1.89	(0.0829)	R²_dC	:	0.373	R²_C	:	0.562
β₃	:	-1.55	(0.121)	R²_dE	:	0.118	R²_E	:	0.315
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.205	(0.0621)	R²_dN8	:	0.00809	R²_N8	:	-0.00623
σ	:	0.544
deviance	:	136.36
__

_____

C
peak time of C	:	15.3
E
wheather	:	temperature
threshold	:	33.38
memory length	:	271
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	3.4
open length of G	:	1.82

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
133.12	0.542	8.46	1.15	1.9	-1.63	0.925	-0.328	0.184	15.4	31.09	273	3.37	1.83
133.17	0.537	8.46	1.17	1.9	-1.58	0.972	--	0.195	15.3	32.5	269	3.41	1.83
135.14	0.541	8.46	1.18	1.89	-1.55	--	-0.693	0.214	15.3	33.75	273	3.38	1.87
136.36	0.544	8.45	1.18	1.89	-1.55	--	--	0.205	15.3	33.38	271	3.4	1.82
266.64	0.761	8.42	1.21	--	-2	--	-0.644	0.231	--	65.54	309	3.48	0.659
166.29	0.605	8.48	1.16	2.49	--	1.19	--	0.181	16.1	--	--	--	--
170.32	0.611	8.48	1.18	2.5	--	--	--	0.188	16.1	--	--	--	--
268.09	0.763	8.45	1.13	--	-2.02	--	--	0.202	--	59.45	308	3.32	0.834
173.53	0.614	8.47	--	1.87	-1.48	--	--	0.133	15.3	34.81	274	3.35	1.95
509.28	1.05	8.46	1.07	--	--	--	--	0.121	--	--	--	--	--
206.72	0.673	8.51	--	2.47	--	--	--	0.0567	16.1	--	--	--	--
276.15	0.774	8.35	--	--	-2.26	--	--	0.356	--	43.64	394	0.7	2.68
539.7	1.08	8.49	--	--	--	--	--	0.00191	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	134.96	temperature	30.0	270	< th	dose dependent	rect.	3	2
3	136.01	temperature	10.0	90	> th	dose dependent	rect.	8	19
4	136.58	wind	5.0	90	< th	dose independent	rect.	3	5
5	136.74	wind	5.0	270	< th	dose independent	rect.	3	2
6	136.91	temperature	30.0	30	< th	dose dependent	rect.	4	5
10	137.00	temperature	10.0	10	> th	dose dependent	rect.	8	20
15	137.57	precipitation	0.1	90	< th	dose independent	rect.	3	5
16	137.57	precipitation	0.1	90	< th	dose dependent	rect.	3	5
21	138.08	precipitation	0.1	270	< th	dose independent	rect.	3	2
22	138.08	precipitation	0.1	270	< th	dose dependent	rect.	3	2
26	138.33	wind	9.0	90	< th	dose independent	rect.	8	19
31	138.57	wind	1.0	270	> th	dose independent	rect.	3	2
36	138.59	temperature	10.0	90	> th	dose independent	rect.	3	5
38	138.59	temperature	30.0	90	< th	dose independent	rect.	3	5
39	138.59	humidity	50.0	90	> th	dose independent	rect.	3	5
41	138.59	atmosphere	995.0	90	> th	dose independent	rect.	3	5
42	138.59	atmosphere	1015.0	90	< th	dose independent	rect.	3	5
43	138.59	temperature	10.0	90	> th	dose independent	rect.	8	19
44	138.63	precipitation	0.1	90	< th	dose independent	rect.	8	19
45	138.63	precipitation	0.1	90	< th	dose dependent	rect.	8	19
50	138.73	radiation	40.0	90	< th	dose independent	rect.	3	5
51	138.73	atmosphere	1000.0	90	> th	dose dependent	rect.	3	5
62	138.88	temperature	10.0	90	> th	dose dependent	rect.	8	6
63	138.94	radiation	1.0	270	< th	dose dependent	rect.	4	1
66	139.02	temperature	10.0	270	> th	dose independent	rect.	4	1
68	139.02	temperature	30.0	270	< th	dose independent	rect.	4	1
69	139.02	humidity	50.0	270	> th	dose independent	rect.	4	1
72	139.02	atmosphere	995.0	270	> th	dose independent	rect.	4	1
73	139.02	atmosphere	1010.0	270	< th	dose independent	rect.	4	1
75	139.02	radiation	20.0	270	< th	dose independent	rect.	4	1
78	139.02	temperature	10.0	270	> th	dose independent	rect.	5	23
79	139.05	wind	9.0	270	< th	dose independent	rect.	5	22
80	139.08	radiation	40.0	270	< th	dose dependent	rect.	4	1
85	139.34	radiation	1.0	270	< th	dose independent	rect.	4	1
116	139.61	temperature	10.0	270	> th	dose dependent	rect.	8	2
121	139.64	wind	9.0	270	< th	dose dependent	rect.	4	1
192	140.13	radiation	1.0	270	< th	dose dependent	rect.	3	5
221	140.46	atmosphere	995.0	90	> th	dose independent	rect.	8	20
228	140.49	atmosphere	1000.0	270	> th	dose dependent	rect.	4	1
232	140.52	wind	9.0	90	< th	dose dependent	rect.	3	5
246	140.69	temperature	10.0	10	> th	dose dependent	rect.	8	6
260	140.97	radiation	20.0	270	< th	dose dependent	rect.	2	6
281	141.31	atmosphere	1005.0	90	> th	dose independent	rect.	3	5
315	141.54	precipitation	0.1	270	< th	dose independent	rect.	6	21
316	141.54	precipitation	0.1	270	< th	dose dependent	rect.	6	21
322	141.62	humidity	50.0	270	> th	dose dependent	rect.	4	1
342	141.75	humidity	50.0	90	> th	dose independent	rect.	8	6
346	141.79	wind	9.0	10	< th	dose dependent	rect.	4	5
350	141.84	precipitation	0.1	90	< th	dose independent	rect.	8	6
351	141.84	precipitation	0.1	90	< th	dose dependent	rect.	8	6
358	141.92	radiation	1.0	270	< th	dose dependent	rect.	3	14
359	141.94	temperature	15.0	90	> th	dose independent	rect.	14	18
363	141.97	wind	9.0	1440	< th	dose independent	rect.	5	4
364	141.97	temperature	10.0	1440	> th	dose independent	rect.	5	4
367	141.97	humidity	50.0	1440	> th	dose independent	rect.	5	4
369	141.97	atmosphere	995.0	1440	> th	dose independent	rect.	5	4
370	141.97	atmosphere	1015.0	1440	< th	dose independent	rect.	5	4
373	141.97	temperature	10.0	1440	> th	dose independent	rect.	9	20
388	142.07	temperature	10.0	270	> th	dose dependent	rect.	6	7
392	142.10	radiation	1.0	270	< th	dose independent	rect.	3	14
406	142.19	temperature	10.0	90	> th	dose independent	rect.	8	6
407	142.19	atmosphere	995.0	90	> th	dose independent	rect.	8	6
408	142.19	atmosphere	1015.0	90	< th	dose independent	rect.	8	6
411	142.21	wind	9.0	90	< th	dose independent	rect.	8	6
418	142.26	radiation	40.0	90	< th	dose independent	rect.	14	18
428	142.34	atmosphere	1005.0	270	> th	dose independent	rect.	4	1
435	142.37	atmosphere	1015.0	90	< th	dose independent	rect.	8	19
445	142.47	temperature	10.0	270	> th	dose dependent	rect.	21	14
455	142.55	humidity	50.0	30	> th	dose independent	rect.	8	20
457	142.59	wind	9.0	90	< th	dose independent	rect.	14	18
467	142.69	precipitation	0.1	90	< th	dose independent	rect.	14	18
468	142.69	precipitation	0.1	90	< th	dose dependent	rect.	14	18
473	142.72	humidity	50.0	90	> th	dose independent	rect.	15	17
476	142.74	wind	1.0	90	> th	dose independent	rect.	8	6
479	142.77	radiation	1.0	270	> th	dose dependent	rect.	8	2
485	142.80	radiation	1.0	90	> th	dose independent	rect.	8	6
522	143.00	atmosphere	995.0	90	> th	dose independent	rect.	14	18
601	143.41	humidity	50.0	90	> th	dose dependent	rect.	4	4
609	143.44	atmosphere	995.0	270	> th	dose independent	rect.	6	21
615	143.47	precipitation	0.1	10	< th	dose independent	rect.	14	18
618	143.47	precipitation	0.1	10	< th	dose dependent	rect.	14	18
628	143.52	temperature	30.0	90	< th	dose dependent	rect.	4	15
636	143.56	humidity	90.0	90	< th	dose independent	rect.	8	6
650	143.64	radiation	30.0	90	< th	dose independent	rect.	3	8
654	143.65	temperature	20.0	270	< th	dose dependent	rect.	3	2
721	143.90	temperature	10.0	1440	> th	dose independent	rect.	9	7
724	143.90	temperature	10.0	1440	> th	dose independent	rect.	16	17
752	143.94	wind	9.0	270	< th	dose dependent	rect.	8	2
769	143.98	atmosphere	1015.0	90	< th	dose independent	rect.	14	18
785	144.02	wind	1.0	90	> th	dose independent	rect.	8	19
826	144.09	temperature	10.0	270	> th	dose dependent	rect.	6	20
839	144.12	radiation	1.0	10	> th	dose independent	rect.	8	6
840	144.12	temperature	10.0	90	> th	dose dependent	rect.	4	4
843	144.13	radiation	40.0	10	< th	dose independent	rect.	12	20
894	144.28	humidity	50.0	270	> th	dose independent	rect.	9	1
944	144.40	radiation	40.0	10	< th	dose independent	rect.	14	18
948	144.41	humidity	50.0	270	> th	dose independent	rect.	21	14
992	144.50	precipitation	0.1	270	< th	dose independent	rect.	9	1
994	144.50	precipitation	0.1	270	< th	dose dependent	rect.	9	1
998	144.51	wind	9.0	270	< th	dose independent	rect.	9	1
1000	144.51	temperature	30.0	90	< th	dose dependent	rect.	3	8