BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0405000 Os03g0405000|AK070839
(561 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0405000 Reticulon family protein 1094 0.0
Os03g0404800 3-beta hydroxysteroid dehydrogenase/isomerase ... 327 1e-89
Os02g0715200 3-beta hydroxysteroid dehydrogenase/isomerase ... 181 1e-45
AK058538 167 2e-41
Os09g0516500 Reticulon family protein 74 2e-13
Os01g0528800 Similar to Cinnamyl alcohol dehydrogenase 70 3e-12
Os03g0278200 NAD-dependent epimerase/dehydratase family pro... 70 4e-12
Os06g0623300 NAD-dependent epimerase/dehydratase family pro... 69 1e-11
>Os03g0405000 Reticulon family protein
Length = 561
Score = 1094 bits (2830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/552 (95%), Positives = 528/552 (95%)
Query: 10 DGRWCVVTGGRGFAARHLVAMLLRSGEWLVRVADLPPAIALDRDEEEGILGAALREGRAA 69
DGRWCVVTGGRGFAARHLVAMLLRSGEWLVRVADLPPAIALDRDEEEGILGAALREGRAA
Sbjct: 10 DGRWCVVTGGRGFAARHLVAMLLRSGEWLVRVADLPPAIALDRDEEEGILGAALREGRAA 69
Query: 70 YASADLRNKAQVAAAFEGADVVFHMAAPDSSINNFHLHYSVNVEGTKNVIDACIRCKVKR 129
YASADLRNKAQVAAAFEGADVVFHMAAPDSSINNFHLHYSVNVEGTKNVIDACIRCKVKR
Sbjct: 70 YASADLRNKAQVAAAFEGADVVFHMAAPDSSINNFHLHYSVNVEGTKNVIDACIRCKVKR 129
Query: 130 LIYTSSPSVVFDGIHGIFDADESMPYPDKFNDSYSETKADAEKLVMKANGRDGLLTCCIR 189
LIYTSSPSVVFDGIHGIFDADESMPYPDKFNDSYSETKADAEKLVMKANGRDGLLTCCIR
Sbjct: 130 LIYTSSPSVVFDGIHGIFDADESMPYPDKFNDSYSETKADAEKLVMKANGRDGLLTCCIR 189
Query: 190 PSSIFGPGDKLLVPSLVTAARAGKSKYIIGDGSNYYDFTYVENVAYGHVCAEKTLSSEDG 249
PSSIFGPGDKLLVPSLVTAARAGKSKYIIGDGSNYYDFTYVENVAYGHVCAEKTLSSEDG
Sbjct: 190 PSSIFGPGDKLLVPSLVTAARAGKSKYIIGDGSNYYDFTYVENVAYGHVCAEKTLSSEDG 249
Query: 250 AKRAAGKTYFITNMEAIKFWEFMSLILEGLGYERPSIKIPVSVMMPVAHMVEWTYKTFAR 309
AKRAAGKTYFITNMEAIKFWEFMSLILEGLGYERPSIKIPVSVMMPVAHMVEWTYKTFAR
Sbjct: 250 AKRAAGKTYFITNMEAIKFWEFMSLILEGLGYERPSIKIPVSVMMPVAHMVEWTYKTFAR 309
Query: 310 YGMKIPQLTPSRIRLLSCNRTFSCSRAKDQLGYEPIVSLKDGLKRTIESYPHLQAQNQRS 369
YGMKIPQLTPSRIRLLSCNRTFSCSRAKDQLGYEPIVSLKDGLKRTIESYPHLQAQNQRS
Sbjct: 310 YGMKIPQLTPSRIRLLSCNRTFSCSRAKDQLGYEPIVSLKDGLKRTIESYPHLQAQNQRS 369
Query: 370 ISKASIFLGNGNLAKTVLWEDMKQTMTVLLLLAVIYYHLFTCGYTFITAMAKLFSLTALF 429
ISKASIFLGNGNLAKTVLWEDMKQTMTVLLLLAVIYYHLFTCGYTFITAMAKLFSLTALF
Sbjct: 370 ISKASIFLGNGNLAKTVLWEDMKQTMTVLLLLAVIYYHLFTCGYTFITAMAKLFSLTALF 429
Query: 430 LFIHGILPANVFGHKVEKLEPSNFHITQVEAHHIAHSVSSTWNSLVGVLKSLCRGNDWPX 489
LFIHGILPANVFGHKVEKLEPSNFHITQVEAHHIAHSVSSTWNSLVGVLKSLCRGNDWP
Sbjct: 430 LFIHGILPANVFGHKVEKLEPSNFHITQVEAHHIAHSVSSTWNSLVGVLKSLCRGNDWPL 489
Query: 490 XXXXXXXXXXXXXXXXXXXXXXXKIGISMAFLGFKAYEKWEDTIDDLVGNACSVVTHFVQ 549
KIGISMAFLGFKAYEKWEDTIDDLVGNACSVVTHFVQ
Sbjct: 490 FFKVVFSLLVVSILSSMSSQSAFKIGISMAFLGFKAYEKWEDTIDDLVGNACSVVTHFVQ 549
Query: 550 GQKSSRQKHADN 561
GQKSSRQKHADN
Sbjct: 550 GQKSSRQKHADN 561
>Os03g0404800 3-beta hydroxysteroid dehydrogenase/isomerase domain containing
protein
Length = 266
Score = 327 bits (838), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 158/246 (64%), Positives = 191/246 (77%), Gaps = 4/246 (1%)
Query: 12 RWCVVTGGRGFAARHLVAMLLRSGEWLVRVADLPPAIALDRDEEEGILGAALREGRAAYA 71
RWC VTGGRGF ARHLVA LLRSGEW VR+ DL PAI LD EE+G+LG ALR+G A Y
Sbjct: 24 RWCAVTGGRGFMARHLVAALLRSGEWRVRITDLAPAITLDPVEEKGLLGEALRDGHAVYD 83
Query: 72 SADLRNKAQVAAAFEGADVVFHMAAPDSSINNFHLHYSVNVEGTKNVIDACIRCKVKRLI 131
S ++ + Q+ AF+G +VVFH AA D IN+F LHY VNVEGTKNVIDAC+ CKVKRLI
Sbjct: 84 SVNVCDITQLTKAFQGVEVVFHTAAADPDINDFQLHYKVNVEGTKNVIDACVTCKVKRLI 143
Query: 132 YTSSPSVVFDGIHGIFDADESMPYPDKFNDSYSETKADAEKLVMKANGRDGLLTCCIRPS 191
YTSS VVFDG+HG+FD DESMPYP+KF D+Y+++KA+AEKLV +NG LLTC IRP
Sbjct: 144 YTSSSGVVFDGVHGLFDVDESMPYPNKFPDAYAQSKAEAEKLVRNSNGICELLTCSIRPG 203
Query: 192 SIFGPGDKLLVPSLVTAARAGKSKYIIGDGSNYYDFTYVENVAYGHVCAEKTLSSEDGAK 251
SIFGPGD +VP L++ R + +IIGDG N DF YVENV +GH+CAEKTLS+++G+K
Sbjct: 204 SIFGPGDT-IVPHLLSHWR---TMFIIGDGMNCDDFVYVENVVHGHICAEKTLSTKEGSK 259
Query: 252 RAAGKT 257
+ GK
Sbjct: 260 ISGGKN 265
>Os02g0715200 3-beta hydroxysteroid dehydrogenase/isomerase domain containing
protein
Length = 478
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 199/381 (52%), Gaps = 33/381 (8%)
Query: 16 VTGGRGFAARHLVAMLLRSGEWLVRVADLPPAIALDRDEEEGILGAALREGRAAYASADL 75
VTGG+GF L LLR G VR DL + + +LGA +R + D+
Sbjct: 16 VTGGQGFVGSALCLELLRRGAREVRSLDLRAS----SPWSDQLLGAGVR-----FFQGDV 66
Query: 76 RNKAQVAAAFEGADVVFHMAAPDSS---INNFHLHYSVNVEGTKNVIDACIRCKVKRLIY 132
R K V A G D VFH+A+ S + VN+ GT NV+DAC V+RL+Y
Sbjct: 67 RKKEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHGVRRLVY 126
Query: 133 TSSPSVVFDGIHGIFDADESMPY--PDKFNDSYSETKADAEKLVMKANGRDG-------L 183
S+ +VVF G I + +E++PY + D+Y+ +K+ AE+LV+K+NGR L
Sbjct: 127 VSTYNVVFGG-EPIVNGNEALPYFPVEDHVDAYARSKSIAEQLVLKSNGRQTKSDKSSRL 185
Query: 184 LTCCIRPSSIFGPGDKLLVPSLVTAARAGKSKYIIGDGSNYYDFTYVENVAYGHVCAEKT 243
TC IRP++I+GPG++ +P +++ A+ G + + IGD + D+ YV+N+ + A
Sbjct: 186 YTCSIRPAAIYGPGEERHLPRILSLAKLGLAFFKIGDPNVKSDWVYVDNLVLALILASMG 245
Query: 244 L----SSEDGAKRAAGKTYFITNMEAIKFWEFMSLILEGLGYERPSIKIPVSVMMPVAHM 299
L G AAG+ YFI + + +EF+S + + L Y P +++ SV + ++
Sbjct: 246 LLDDIPDRKGIPVAAGQAYFICDGSPVNTFEFLSPLFQSLDYTVPRVRMDTSVALAISRF 305
Query: 300 VEWTYKTFARY--GMKIPQ--LTPSRIRLLSCNRTFSCSRAKDQLGYEPIVSLKDGLKRT 355
+ Y + IPQ L P+ + + FS +A++++GY P+VS ++GL T
Sbjct: 306 FVFMYTLLYPWLDSKWIPQPLLLPAEVYKVGVTHYFSYLKAREEIGYVPMVSPREGLAAT 365
Query: 356 IESYPHLQAQNQRSISKASIF 376
I + Q + ++ + +IF
Sbjct: 366 IS---YWQERKRKELDGPTIF 383
>AK058538
Length = 309
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 154/281 (54%), Gaps = 19/281 (6%)
Query: 91 VFHMAAPDSSINNFHLHYSVNVEGTKNVIDACIRCKVKRLIYTSSPSVVFDGIHGIFDAD 150
V H A+P + +H VNV GTK ++ A VK +YTSS SV+ D + +AD
Sbjct: 19 VIHTASPHFDLKP-EIHEKVNVGGTKVLLQAAQEAGVKAFVYTSSASVILDHQTELINAD 77
Query: 151 ESMPY--PDKFNDSYSETKADAEKLVMKAN-GRDGLLTCCIRPSSIFGPGDKLLVPSLVT 207
E P D + Y+ TKA AE V++AN + LTC IRP+ IFG GD L+P +V+
Sbjct: 78 ERWPLVTGDDQPEYYTTTKAYAETAVLQANRNPENFLTCAIRPTGIFGEGDVQLLPKMVS 137
Query: 208 AARAGKSKYIIGDGSNYYDFTYVENVAYGHVCA-------EKTLSSED-GAKRAAGKTYF 259
A R G++K+ +GD +N +DFTYVENVA+GHV A K L + +R G+ +F
Sbjct: 138 ACRKGQTKFQVGDNTNMFDFTYVENVAHGHVLAVLALLHTHKVLPTIPLDTERVDGEAFF 197
Query: 260 ITNMEAIKFWEFMSLILEGLGYERPSIKI---PVSVMMPVAHMVEWTYKTFARYGMKIPQ 316
ITN + + FW+F + G P + + ++E F G K P
Sbjct: 198 ITNGQPVYFWDFARKVWHEAGDRVPLSSVWHLSADFARAIGAVLE---NVFWLMGKK-PN 253
Query: 317 LTPSRIRLLSCNRTFSCSRAKDQLGYEPIVSLKDGLKRTIE 357
LT ++++ S ++ S ++A+ +LGYEP+V L +G+KR ++
Sbjct: 254 LTRAQVKYSSMSKYHSINKARQRLGYEPLVDLDEGIKRGVQ 294
>Os09g0516500 Reticulon family protein
Length = 187
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 78/166 (46%)
Query: 383 AKTVLWEDMKQTMTVLLLLAVIYYHLFTCGYTFITAMAKLFSLTALFLFIHGILPANVFG 442
A +LW D K+T + + +L +++Y TF+++ AK+ + +L LFIHG+LP VFG
Sbjct: 6 ADILLWRDEKKTFSYVTVLFLLFYWFLLSDRTFVSSAAKILLVISLALFIHGVLPPQVFG 65
Query: 443 HKVEKLEPSNFHITQVEAHHIAHSVSSTWNSLVGVLKSLCRGNDWPXXXXXXXXXXXXXX 502
VEK+ F ++Q + ++S WN + L+ L G+DW
Sbjct: 66 FTVEKVTSDYFEVSQETLKNTLVWMASIWNGGIYKLRVLAEGDDWTTFLKAFAFLYCVKV 125
Query: 503 XXXXXXXXXXKIGISMAFLGFKAYEKWEDTIDDLVGNACSVVTHFV 548
+ ++ F+ F YE+ E+ ID LV A V V
Sbjct: 126 MLNLQFRMLMGLVLAFMFVVFIVYEQCEEEIDSLVAFASVKVKSLV 171
>Os01g0528800 Similar to Cinnamyl alcohol dehydrogenase
Length = 336
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 119/260 (45%), Gaps = 43/260 (16%)
Query: 11 GRWCVVTGGRGFAARHLVAMLLRSGEWLVRVADLPPAIALDRDEEEGILGAALREG---R 67
G+ VTG G+ A LV +LL G + VR A D + + L +G R
Sbjct: 12 GKLVCVTGASGYIASWLVRLLLARG-YTVR------ATIRDTSDPKKTLHLRALDGANER 64
Query: 68 AAYASADLRNKAQVAAAFEGADVVFHMAAPDSSINNFHLHYSVN----------VEGTKN 117
A+L + AA G D VFH A+P +++V V+GT N
Sbjct: 65 LHLFEANLLEEGSFDAAVNGCDCVFHTASP--------FYHNVKDPKAELLDPAVKGTLN 116
Query: 118 VIDACIRCKVKRLIYTSS-PSVVFDGIHGIFD--ADE---SMP-YPDKFNDSYSETKADA 170
V+ +C + ++R+I TSS +V ++G D DE S+P +K Y +K A
Sbjct: 117 VLGSCKKASIRRVIVTSSMAAVAYNGKPRTPDVVVDETWFSVPEICEKHQQWYVLSKTLA 176
Query: 171 EKLVMKANGRDGLLTCCIRPSSIFGPGDKLLVPSLVTAARAGKSKYIIGDGSNYYDFTY- 229
E+ K + +G + P+ + GP LL PSL T+A A K I G S Y +F++
Sbjct: 177 EEAAWKFSKDNGFEIVTVNPAMVIGP---LLQPSLNTSAEA-ILKLINGSSSTYPNFSFG 232
Query: 230 ---VENVAYGHVCAEKTLSS 246
V++VA H+ A + S+
Sbjct: 233 WINVKDVALAHILAYEVPSA 252
>Os03g0278200 NAD-dependent epimerase/dehydratase family protein
Length = 675
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 19/231 (8%)
Query: 15 VVTGGRGFAARHLVAMLLRS-GEWLVRVADLPPAIALDRDEEEGILGAALREGRAAYASA 73
++TG GF A H+ L+R+ + + V D + + + + ASA
Sbjct: 10 LITGAAGFIASHVANRLVRNYPHYKIVVLDKLDYCSSLSNLNPSRPSPNFKFVKGDIASA 69
Query: 74 DLRNKAQVAAAFEGADVVFHMAAP---DSSINNFHLHYSVNVEGTKNVIDAC-IRCKVKR 129
DL N E D + H AA D+S N N+ GT +++AC + +++R
Sbjct: 70 DLVNYLLTT---ESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
Query: 130 LIYTSSPSVV----FDGIHGIFDADESMPYPDKFNDSYSETKADAEKLVMKANGRDGLLT 185
I+ S+ V D + G +A + +P + YS TKA AE LVM GL
Sbjct: 127 FIHVSTDEVYGETDEDAVVGNHEASQLLP-----TNPYSATKAGAEMLVMAYGRSYGLPV 181
Query: 186 CCIRPSSIFGPGD--KLLVPSLVTAARAGKSKYIIGDGSNYYDFTYVENVA 234
R ++++GP + L+P + A G I GDGSN + Y E+VA
Sbjct: 182 ITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVA 232
>Os06g0623300 NAD-dependent epimerase/dehydratase family protein
Length = 321
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 95/216 (43%), Gaps = 21/216 (9%)
Query: 16 VTGGRGFAARHLVAMLLRSGEWLVRVADLPPAIALDRDEEEGILGAALREGRAAYASADL 75
VTG GF A V +LL G + VR P A + D + GA E R ADL
Sbjct: 12 VTGAGGFMASSHVELLLSRGNYAVRGTVRDPGDAKN-DHLRALQGA---EERLQLLKADL 67
Query: 76 RNKAQVAAAFEGADVVFHMAAPDSSINNFHLHYSV---NVEGTKNVIDACIRCKVKRLIY 132
+ VA+A G + VFH+A+P S + + V V GT NV+ AC KVKR++
Sbjct: 68 LDYDSVASAVAGCEGVFHVASPVPSGRSTNPEVEVIAPAVTGTLNVLKACHEAKVKRVVM 127
Query: 133 TSSPSVVFDGIHGIFD--------ADESMPYPDKFNDSYSETKADAEKLVMKANGRDGLL 184
SS + VF + D +DE + K D Y +K AE+ + GL
Sbjct: 128 VSSIAAVFSNPNWPKDKAFTEDSWSDEELCR--KNQDWYYLSKTVAEREAFAYAAKTGLD 185
Query: 185 TCCIRPSSIFGPGDKLLVPSLVTAARAGKSKYIIGD 220
I PS + GP L+ S V A+ Y GD
Sbjct: 186 IVTICPSLVIGP----LMQSTVNASSKVLINYFKGD 217
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,156,982
Number of extensions: 732822
Number of successful extensions: 1768
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1769
Number of HSP's successfully gapped: 9
Length of query: 561
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 455
Effective length of database: 11,501,117
Effective search space: 5233008235
Effective search space used: 5233008235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)