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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0715200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 3-beta hydroxysteroid dehydrogenase/isomerase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0275) R2 : 0.258
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.57 (0.066) R2dC : 0.132 R2C : 0.069
β3 : 0.753 (0.0801) R2dE : 0.17 R2E : 0.122
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0772 (0.0607) R2dN8 : 0.00407 R2N8 : 0.0176
σ : 0.509
deviance : 119.22
__
_____
C
peak time of C : 12
E
wheather : temperature
threshold : 21.7
memory length : 884
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.68 0.503 3.43 -0.287 0.591 0.922 0.536 0.503 0.0505 12 21.32 921 -- --
115.45 0.5 3.45 -0.404 0.602 0.911 0.457 -- 0.00339 11.9 21.3 870 -- --
115.63 0.501 3.43 -0.324 0.585 0.923 -- 0.327 0.0401 12.1 21.3 985 -- --
115.73 0.501 3.44 -0.388 0.579 0.859 -- -- 0.00911 12.1 21.8 999 -- --
133.44 0.538 3.43 -0.288 -- 0.872 -- 0.505 0.0503 -- 21.5 1412 -- --
141.08 0.557 3.39 -0.0749 0.448 -- 0.49 -- 0.267 12.4 -- -- -- --
142.12 0.558 3.39 -0.0561 0.447 -- -- -- 0.27 12.4 -- -- -- --
133.93 0.539 3.45 -0.41 -- 0.82 -- -- 0.0177 -- 21.68 1422 -- --
119.22 0.509 3.43 -- 0.57 0.753 -- -- 0.0772 12 21.7 884 -- --
154.65 0.581 3.4 -0.0711 -- -- -- -- 0.263 -- -- -- -- --
142.2 0.558 3.39 -- 0.447 -- -- -- 0.276 12.4 -- -- -- --
137.67 0.546 3.44 -- -- 0.687 -- -- 0.0925 -- 21.73 1407 -- --
154.78 0.581 3.4 -- -- -- -- -- 0.271 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 112.29 temperature 20 720 > th dose independent rect. 4 2
4 114.30 temperature 15 720 > th dose dependent rect. 4 2
5 114.33 temperature 20 720 > th dose independent rect. 3 13
11 115.31 temperature 25 720 < th dose dependent sin 6 NA
12 115.33 temperature 25 720 < th dose dependent rect. 23 16
22 115.59 temperature 25 720 < th dose dependent rect. 1 14
40 115.80 temperature 30 720 < th dose dependent rect. 1 8
49 115.91 temperature 20 720 > th dose independent rect. 4 7
62 116.14 temperature 20 720 > th dose independent rect. 23 17
66 116.17 temperature 10 720 > th dose dependent rect. 23 8
113 116.64 temperature 15 720 > th dose dependent rect. 3 6
123 116.73 temperature 20 720 > th dose independent rect. 4 16
124 116.73 temperature 20 720 > th dose independent rect. 21 19
133 116.78 temperature 20 720 > th dose independent rect. 19 21
139 116.84 temperature 20 720 > th dose independent sin 6 NA
140 116.86 temperature 10 720 > th dose dependent sin 7 NA
153 116.96 temperature 20 720 < th dose independent sin 6 NA
155 117.00 temperature 20 720 < th dose independent rect. 2 7
203 117.31 temperature 20 720 < th dose independent rect. 2 13
224 117.37 temperature 15 720 > th dose dependent rect. 23 10
226 117.38 temperature 25 720 < th dose dependent rect. 2 3
228 117.40 temperature 15 10 > th dose dependent rect. 5 15
238 117.44 temperature 20 720 < th dose independent rect. 23 16
282 117.69 temperature 15 720 > th dose dependent rect. 21 14
296 117.74 temperature 20 720 < th dose independent rect. 23 12
330 117.90 temperature 20 720 > th dose independent rect. 23 8
349 117.96 temperature 10 720 > th dose dependent rect. 19 16
427 118.25 temperature 20 720 > th dose independent rect. 19 16
448 118.32 temperature 20 720 > th dose independent rect. 23 10
473 118.48 temperature 20 720 > th dose independent rect. 3 21
476 118.50 temperature 10 720 > th dose dependent rect. 23 16
492 118.55 temperature 20 720 > th dose independent rect. 23 12
493 118.55 temperature 20 720 > th dose independent rect. 21 14
501 118.58 temperature 10 270 > th dose dependent rect. 3 14
514 118.64 temperature 10 720 > th dose dependent rect. 21 18
528 118.70 temperature 25 720 < th dose dependent no NA NA
530 118.70 temperature 10 720 > th dose dependent rect. 19 20
591 118.90 temperature 30 270 < th dose dependent rect. 6 8
615 119.01 temperature 25 720 < th dose dependent rect. 5 2
619 119.03 temperature 20 720 > th dose independent rect. 23 21
632 119.06 temperature 20 720 > th dose independent rect. 19 12
655 119.14 temperature 30 30 < th dose dependent rect. 7 22
664 119.16 temperature 20 720 > th dose independent rect. 12 23
694 119.24 temperature 20 720 > th dose independent rect. 21 23
718 119.31 temperature 20 720 > th dose independent rect. 12 21
792 119.52 temperature 20 720 > th dose independent rect. 13 18
801 119.55 temperature 20 720 > th dose independent rect. 8 23
812 119.57 temperature 25 720 < th dose dependent rect. 6 23
826 119.61 temperature 25 720 < th dose dependent rect. 4 23
832 119.64 temperature 20 720 > th dose independent rect. 10 23
890 119.82 temperature 20 720 > th dose independent no NA NA
891 119.82 temperature 20 720 < th dose independent no NA NA
893 119.82 temperature 20 720 < th dose independent rect. 11 23
949 120.07 temperature 25 270 < th dose independent rect. 7 6