BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0715200 Os02g0715200|AK070855
(478 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0715200 3-beta hydroxysteroid dehydrogenase/isomerase ... 980 0.0
Os03g0405000 Reticulon family protein 181 9e-46
AK058538 121 9e-28
Os03g0404800 3-beta hydroxysteroid dehydrogenase/isomerase ... 114 2e-25
>Os02g0715200 3-beta hydroxysteroid dehydrogenase/isomerase domain containing
protein
Length = 478
Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/478 (100%), Positives = 478/478 (100%)
Query: 1 MHLSENEGIEGVRFAVTGGQGFVGSALCLELLRRGAREVRSLDLRASSPWSDQLLGAGVR 60
MHLSENEGIEGVRFAVTGGQGFVGSALCLELLRRGAREVRSLDLRASSPWSDQLLGAGVR
Sbjct: 1 MHLSENEGIEGVRFAVTGGQGFVGSALCLELLRRGAREVRSLDLRASSPWSDQLLGAGVR 60
Query: 61 FFQGDVRKKEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHG 120
FFQGDVRKKEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHG
Sbjct: 61 FFQGDVRKKEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHG 120
Query: 121 VRRLVYVSTYNVVFGGEPIVNGNEALPYFPVEDHVDAYARSKSIAEQLVLKSNGRQTKSD 180
VRRLVYVSTYNVVFGGEPIVNGNEALPYFPVEDHVDAYARSKSIAEQLVLKSNGRQTKSD
Sbjct: 121 VRRLVYVSTYNVVFGGEPIVNGNEALPYFPVEDHVDAYARSKSIAEQLVLKSNGRQTKSD 180
Query: 181 KSSRLYTCSIRPAAIYGPGEERHLPRILSLAKLGLAFFKIGDPNVKSDWVYVDNLVLALI 240
KSSRLYTCSIRPAAIYGPGEERHLPRILSLAKLGLAFFKIGDPNVKSDWVYVDNLVLALI
Sbjct: 181 KSSRLYTCSIRPAAIYGPGEERHLPRILSLAKLGLAFFKIGDPNVKSDWVYVDNLVLALI 240
Query: 241 LASMGLLDDIPDRKGIPVAAGQAYFICDGSPVNTFEFLSPLFQSLDYTVPRVRMDTSVAL 300
LASMGLLDDIPDRKGIPVAAGQAYFICDGSPVNTFEFLSPLFQSLDYTVPRVRMDTSVAL
Sbjct: 241 LASMGLLDDIPDRKGIPVAAGQAYFICDGSPVNTFEFLSPLFQSLDYTVPRVRMDTSVAL 300
Query: 301 AISRFFVFMYTLLYPWLDSKWIPQPLLLPAEVYKVGVTHYFSYLKAREEIGYVPMVSPRE 360
AISRFFVFMYTLLYPWLDSKWIPQPLLLPAEVYKVGVTHYFSYLKAREEIGYVPMVSPRE
Sbjct: 301 AISRFFVFMYTLLYPWLDSKWIPQPLLLPAEVYKVGVTHYFSYLKAREEIGYVPMVSPRE 360
Query: 361 GLAATISYWQERKRKELDGPTIFPWLFVTIGMLALFSAAYLPPVGPLKWVLDLHLFVFRS 420
GLAATISYWQERKRKELDGPTIFPWLFVTIGMLALFSAAYLPPVGPLKWVLDLHLFVFRS
Sbjct: 361 GLAATISYWQERKRKELDGPTIFPWLFVTIGMLALFSAAYLPPVGPLKWVLDLHLFVFRS 420
Query: 421 KLVIRLVFVIATALHVGEAVYAWFLAKKYDPRNATGWFWQTFMLGFFSLRYLLKRMRE 478
KLVIRLVFVIATALHVGEAVYAWFLAKKYDPRNATGWFWQTFMLGFFSLRYLLKRMRE
Sbjct: 421 KLVIRLVFVIATALHVGEAVYAWFLAKKYDPRNATGWFWQTFMLGFFSLRYLLKRMRE 478
>Os03g0405000 Reticulon family protein
Length = 561
Score = 181 bits (460), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 199/381 (52%), Gaps = 33/381 (8%)
Query: 16 VTGGQGFVGSALCLELLRRGAREVRSLDLRAS----SPWSDQLLGAGVR-----FFQGDV 66
VTGG+GF L LLR G VR DL + + +LGA +R + D+
Sbjct: 16 VTGGRGFAARHLVAMLLRSGEWLVRVADLPPAIALDRDEEEGILGAALREGRAAYASADL 75
Query: 67 RKKEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHGVRRLVY 126
R K V A G D VFH+A+ S + VN+ GT NV+DAC V+RL+Y
Sbjct: 76 RNKAQVAAAFEGADVVFHMAAPDSS---INNFHLHYSVNVEGTKNVIDACIRCKVKRLIY 132
Query: 127 VSTYNVVFGG-EPIVNGNEALPYFPVEDHVDAYARSKSIAEQLVLKSNGRQTKSDKSSRL 185
S+ +VVF G I + +E++PY + D+Y+ +K+ AE+LV+K+NGR L
Sbjct: 133 TSSPSVVFDGIHGIFDADESMPY--PDKFNDSYSETKADAEKLVMKANGRDG-------L 183
Query: 186 YTCSIRPAAIYGPGEERHLPRILSLAKLGLAFFKIGDPNVKSDWVYVDNLVLALILASMG 245
TC IRP++I+GPG++ +P +++ A+ G + + IGD + D+ YV+N+ + A
Sbjct: 184 LTCCIRPSSIFGPGDKLLVPSLVTAARAGKSKYIIGDGSNYYDFTYVENVAYGHVCAEKT 243
Query: 246 LLDDIPDRKGIPVAAGQAYFICDGSPVNTFEFLSPLFQSLDYTVPRVRMDTSVALAISRF 305
L G AAG+ YFI + + +EF+S + + L Y P +++ SV + ++
Sbjct: 244 L----SSEDGAKRAAGKTYFITNMEAIKFWEFMSLILEGLGYERPSIKIPVSVMMPVAHM 299
Query: 306 FVFMYTLLYPWLDSKWIPQPLLLPAEVYKVGVTHYFSYLKAREEIGYVPMVSPREGLAAT 365
+ Y + IPQ L P+ + + FS +A++++GY P+VS ++GL T
Sbjct: 300 VEWTYKTFARY--GMKIPQ--LTPSRIRLLSCNRTFSCSRAKDQLGYEPIVSLKDGLKRT 355
Query: 366 IS---YWQERKRKELDGPTIF 383
I + Q + ++ + +IF
Sbjct: 356 IESYPHLQAQNQRSISKASIF 376
>AK058538
Length = 309
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 145/303 (47%), Gaps = 26/303 (8%)
Query: 81 CVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHGVRRLVYVSTYNVVFGGE-PI 139
V H AS K + ++VN+ GT +L A E GV+ VY S+ +V+ + +
Sbjct: 18 AVIHTASPHFDLKPEIH----EKVNVGGTKVLLQAAQEAGVKAFVYTSSASVILDHQTEL 73
Query: 140 VNGNEALPYFPVEDHVDAYARSKSIAEQLVLKSNGRQTKSDKSSRLYTCSIRPAAIYGPG 199
+N +E P +D + Y +K+ AE VL++N TC+IRP I+G G
Sbjct: 74 INADERWPLVTGDDQPEYYTTTKAYAETAVLQAN------RNPENFLTCAIRPTGIFGEG 127
Query: 200 EERHLPRILSLAKLGLAFFKIGDPNVKSDWVYVDNLVLALILASMGLLDDIPDRKGIPVA 259
+ + LP+++S + G F++GD D+ YV+N+ +LA + LL IP+
Sbjct: 128 DVQLLPKMVSACRKGQTKFQVGDNTNMFDFTYVENVAHGHVLAVLALLHTHKVLPTIPLD 187
Query: 260 A----GQAYFICDGSPVNTFEFLSPLFQSLDYTVPRV---RMDTSVALAISRFFVFMYTL 312
G+A+FI +G PV ++F ++ VP + A AI ++
Sbjct: 188 TERVDGEAFFITNGQPVYFWDFARKVWHEAGDRVPLSSVWHLSADFARAIGAVLENVF-- 245
Query: 313 LYPWLDSKWIPQPLLLPAEVYKVGVTHYFSYLKAREEIGYVPMVSPREGLAATISYWQER 372
WL K +P L A+V ++ Y S KAR+ +GY P+V EG+ + Y E+
Sbjct: 246 ---WLMGK---KPNLTRAQVKYSSMSKYHSINKARQRLGYEPLVDLDEGIKRGVQYILEQ 299
Query: 373 KRK 375
++K
Sbjct: 300 EKK 302
>Os03g0404800 3-beta hydroxysteroid dehydrogenase/isomerase domain containing
protein
Length = 266
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 138/261 (52%), Gaps = 36/261 (13%)
Query: 15 AVTGGQGFVGSALCLELLRRGAREVRSLDLRAS---SPWSDQ-LLGAGVR-----FFQGD 65
AVTGG+GF+ L LLR G VR DL + P ++ LLG +R + +
Sbjct: 27 AVTGGRGFMARHLVAALLRSGEWRVRITDLAPAITLDPVEEKGLLGEALRDGHAVYDSVN 86
Query: 66 VRKKEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHGVRRLV 125
V + KA +GV+ VFH A+ + ++ +VN+ GT NV+DAC V+RL+
Sbjct: 87 VCDITQLTKAFQGVEVVFHTAA---ADPDINDFQLHYKVNVEGTKNVIDACVTCKVKRLI 143
Query: 126 YVSTYNVVFGG-EPIVNGNEALPY---FPVEDHVDAYARSKSIAEQLVLKSNGRQTKSDK 181
Y S+ VVF G + + +E++PY FP DAYA+SK+ AE+LV SNG
Sbjct: 144 YTSSSGVVFDGVHGLFDVDESMPYPNKFP-----DAYAQSKAEAEKLVRNSNG------- 191
Query: 182 SSRLYTCSIRPAAIYGPGEERHLPRILSLAKLGLAFFKIGDPNVKSDWVYVDNLVLALIL 241
L TCSIRP +I+GPG+ +P +LS + F IGD D+VYV+N+V I
Sbjct: 192 ICELLTCSIRPGSIFGPGDTI-VPHLLSHWR---TMFIIGDGMNCDDFVYVENVVHGHIC 247
Query: 242 ASMGLLDDIPDRKGIPVAAGQ 262
A L ++G ++ G+
Sbjct: 248 AEKTL----STKEGSKISGGK 264
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.141 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,682,471
Number of extensions: 722291
Number of successful extensions: 1955
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1955
Number of HSP's successfully gapped: 4
Length of query: 478
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 373
Effective length of database: 11,553,331
Effective search space: 4309392463
Effective search space used: 4309392463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)