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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0404800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 3-beta hydroxysteroid dehydrogenase/isomerase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0361) R2 : 0.000883
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0483 (0.076) R2dN8 : 0.00114 R2N8 : 0.000883
σ : 0.68
deviance : 212.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.84 0.668 2.91 0.069 0.124 2.7 -0.0718 8.85 0.0566 6.59 10.4 575 -- --
212.09 0.678 2.85 0.0834 0.269 1.87 0.184 -- 0.082 5.75 10.3 585 -- --
201.85 0.662 2.91 0.0676 0.123 2.69 -- 8.86 0.0565 6.5 10.39 575 -- --
208.78 0.673 2.87 0.11 0.231 1.34 -- -- 0.113 5.51 10.4 585 -- --
202.63 0.663 2.91 0.0676 -- 2.65 -- 8.89 0.0577 -- 10.38 577 -- --
211.61 0.682 2.88 -0.0721 0.105 -- 0.0781 -- 0.0383 4.61 -- -- -- --
211.62 0.681 2.88 -0.0725 0.106 -- -- -- 0.0379 4.74 -- -- -- --
208.32 0.672 2.87 -0.00803 -- 0.959 -- -- 0.0797 -- 10.4 532 -- --
207.35 0.671 2.87 -- 0.141 1.06 -- -- 0.0685 5.67 10.7 546 -- --
212.22 0.681 2.88 -0.0685 -- -- -- -- 0.0407 -- -- -- -- --
211.76 0.681 2.88 -- 0.105 -- -- -- 0.046 4.76 -- -- -- --
208.29 0.672 2.88 -- -- 0.991 -- -- 0.0661 -- 10.69 537 -- --
212.34 0.68 2.88 -- -- -- -- -- 0.0483 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 192.76 radiation 1 1440 < th dose independent rect. 11 1
2 192.76 radiation 1 1440 < th dose dependent rect. 11 1
3 198.74 radiation 1 1440 < th dose dependent rect. 14 2
4 198.75 radiation 1 1440 > th dose independent rect. 14 1
5 198.83 radiation 1 1440 < th dose independent rect. 14 1
23 199.85 radiation 1 1440 > th dose independent rect. 11 4
24 199.91 wind 1 720 < th dose independent rect. 23 1
30 200.01 humidity 60 14400 < th dose independent rect. 6 1
32 200.01 humidity 60 14400 < th dose independent rect. 20 1
34 200.01 radiation 20 14400 > th dose independent rect. 17 1
85 200.01 humidity 60 14400 < th dose dependent rect. 6 1
87 200.01 humidity 60 14400 < th dose dependent rect. 20 1
89 200.01 radiation 20 14400 > th dose dependent rect. 17 1
141 200.11 radiation 1 1440 > th dose independent rect. 8 7
143 200.25 humidity 60 14400 > th dose independent rect. 5 3
148 200.43 wind 1 90 < th dose dependent rect. 24 1
149 200.51 humidity 60 14400 > th dose independent rect. 20 12
151 200.68 wind 1 90 < th dose independent rect. 23 2
190 201.27 humidity 90 720 > th dose dependent rect. 20 4
203 201.39 wind 1 1440 > th dose independent rect. 23 1
206 201.40 humidity 90 720 > th dose dependent rect. 21 2
212 201.52 humidity 60 14400 > th dose independent rect. 1 7
225 201.61 wind 9 720 > th dose dependent rect. 14 1
230 201.78 wind 5 90 > th dose dependent rect. 23 1
233 201.83 wind 9 720 > th dose independent rect. 14 1
259 202.45 atmosphere 1005 90 < th dose dependent rect. 24 11
263 202.48 humidity 70 14400 > th dose independent rect. 21 2
287 202.95 wind 9 720 > th dose dependent rect. 17 4
288 202.95 wind 9 720 > th dose dependent rect. 17 6
296 202.97 wind 9 720 > th dose dependent rect. 17 2
315 203.05 wind 9 720 > th dose dependent rect. 14 5
318 203.06 wind 9 1440 > th dose independent rect. 22 4
327 203.06 wind 9 1440 > th dose dependent rect. 22 4
337 203.08 wind 9 1440 > th dose independent rect. 22 1
342 203.08 wind 9 1440 > th dose dependent rect. 22 1
353 203.12 wind 1 720 > th dose independent rect. 17 8
361 203.15 wind 9 720 > th dose dependent rect. 14 20
367 203.17 wind 9 720 > th dose dependent sin 13 NA
369 203.18 wind 9 720 > th dose independent rect. 17 2
419 203.28 wind 7 90 > th dose independent rect. 22 1
423 203.29 humidity 80 10 > th dose independent rect. 10 1
431 203.31 wind 9 90 > th dose dependent rect. 22 12
489 203.39 temperature 20 90 < th dose dependent rect. 1 1
501 203.41 humidity 80 10 > th dose dependent rect. 10 1
544 203.48 humidity 50 30 < th dose dependent rect. 17 19
549 203.51 wind 7 1440 < th dose independent rect. 14 1
560 203.52 temperature 20 10 < th dose dependent rect. 2 1
569 203.55 humidity 50 30 < th dose independent rect. 17 19
573 203.56 humidity 50 30 < th dose dependent rect. 17 1
593 203.58 wind 9 720 > th dose independent rect. 17 17
594 203.59 humidity 50 30 < th dose independent rect. 17 1
615 203.63 radiation 10 30 > th dose independent rect. 17 1
655 203.76 atmosphere 1000 270 < th dose independent rect. 18 3
657 203.76 atmosphere 1000 270 < th dose dependent rect. 17 4
658 203.76 atmosphere 1000 90 < th dose dependent rect. 17 7
659 203.78 atmosphere 1000 270 < th dose independent rect. 20 1
661 203.78 atmosphere 1000 90 < th dose dependent rect. 19 5
669 203.79 atmosphere 1000 90 < th dose dependent rect. 21 3
710 203.83 wind 1 270 < th dose independent rect. 19 1
715 203.83 wind 1 270 < th dose dependent rect. 19 1
749 203.91 atmosphere 1000 90 < th dose independent rect. 22 1
750 203.91 atmosphere 1000 10 < th dose independent rect. 23 1
782 203.94 atmosphere 1000 10 < th dose independent rect. 18 7
792 203.95 radiation 10 30 > th dose dependent rect. 17 1
814 203.97 radiation 30 43200 < th dose independent rect. 17 1
861 204.10 radiation 1 1440 > th dose independent rect. 11 18
877 204.11 radiation 1 1440 < th dose independent rect. 11 18
882 204.12 radiation 1 1440 < th dose independent rect. 11 16
892 204.13 radiation 1 1440 < th dose independent rect. 11 14
918 204.16 humidity 80 10 > th dose dependent rect. 8 3