BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0404800 Os03g0404800|AK099537
(266 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0404800 3-beta hydroxysteroid dehydrogenase/isomerase ... 553 e-158
Os03g0405000 Reticulon family protein 327 5e-90
Os02g0715200 3-beta hydroxysteroid dehydrogenase/isomerase ... 114 8e-26
AK058538 104 5e-23
>Os03g0404800 3-beta hydroxysteroid dehydrogenase/isomerase domain containing
protein
Length = 266
Score = 553 bits (1426), Expect = e-158, Method: Compositional matrix adjust.
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 METAPAANGCSGGRRLQEEEPAARWCAVTGGRGFMARHLVAALLRSGEWRVRITDLAPAI 60
METAPAANGCSGGRRLQEEEPAARWCAVTGGRGFMARHLVAALLRSGEWRVRITDLAPAI
Sbjct: 1 METAPAANGCSGGRRLQEEEPAARWCAVTGGRGFMARHLVAALLRSGEWRVRITDLAPAI 60
Query: 61 TLDPVEEKGLLGEALRDGHAVYDSVNVCDITQLTKAFQGVEVVFHTAAADPDINDFQLHY 120
TLDPVEEKGLLGEALRDGHAVYDSVNVCDITQLTKAFQGVEVVFHTAAADPDINDFQLHY
Sbjct: 61 TLDPVEEKGLLGEALRDGHAVYDSVNVCDITQLTKAFQGVEVVFHTAAADPDINDFQLHY 120
Query: 121 KVNVEGTKNVIDACVTCKVKRLIYTSSSGVVFDGVHGLFDVDESMPYPNKFPDAYAQSKA 180
KVNVEGTKNVIDACVTCKVKRLIYTSSSGVVFDGVHGLFDVDESMPYPNKFPDAYAQSKA
Sbjct: 121 KVNVEGTKNVIDACVTCKVKRLIYTSSSGVVFDGVHGLFDVDESMPYPNKFPDAYAQSKA 180
Query: 181 EAEKLVRNSNGICELLTCSIRPGSIFGPGDTIVPHLLSHWRTMFIIGDGMNCDDFVYVEN 240
EAEKLVRNSNGICELLTCSIRPGSIFGPGDTIVPHLLSHWRTMFIIGDGMNCDDFVYVEN
Sbjct: 181 EAEKLVRNSNGICELLTCSIRPGSIFGPGDTIVPHLLSHWRTMFIIGDGMNCDDFVYVEN 240
Query: 241 VVHGHICAEKTLSTKEGSKISGGKNV 266
VVHGHICAEKTLSTKEGSKISGGKNV
Sbjct: 241 VVHGHICAEKTLSTKEGSKISGGKNV 266
>Os03g0405000 Reticulon family protein
Length = 561
Score = 327 bits (838), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 158/246 (64%), Positives = 191/246 (77%), Gaps = 4/246 (1%)
Query: 24 RWCAVTGGRGFMARHLVAALLRSGEWRVRITDLAPAITLDPVEEKGLLGEALRDGHAVYD 83
RWC VTGGRGF ARHLVA LLRSGEW VR+ DL PAI LD EE+G+LG ALR+G A Y
Sbjct: 12 RWCVVTGGRGFAARHLVAMLLRSGEWLVRVADLPPAIALDRDEEEGILGAALREGRAAYA 71
Query: 84 SVNVCDITQLTKAFQGVEVVFHTAAADPDINDFQLHYKVNVEGTKNVIDACVTCKVKRLI 143
S ++ + Q+ AF+G +VVFH AA D IN+F LHY VNVEGTKNVIDAC+ CKVKRLI
Sbjct: 72 SADLRNKAQVAAAFEGADVVFHMAAPDSSINNFHLHYSVNVEGTKNVIDACIRCKVKRLI 131
Query: 144 YTSSSGVVFDGVHGLFDVDESMPYPNKFPDAYAQSKAEAEKLVRNSNGICELLTCSIRPG 203
YTSS VVFDG+HG+FD DESMPYP+KF D+Y+++KA+AEKLV +NG LLTC IRP
Sbjct: 132 YTSSPSVVFDGIHGIFDADESMPYPDKFNDSYSETKADAEKLVMKANGRDGLLTCCIRPS 191
Query: 204 SIFGPGDT-IVPHLLSHWR---TMFIIGDGMNCDDFVYVENVVHGHICAEKTLSTKEGSK 259
SIFGPGD +VP L++ R + +IIGDG N DF YVENV +GH+CAEKTLS+++G+K
Sbjct: 192 SIFGPGDKLLVPSLVTAARAGKSKYIIGDGSNYYDFTYVENVAYGHVCAEKTLSSEDGAK 251
Query: 260 ISGGKN 265
+ GK
Sbjct: 252 RAAGKT 257
>Os02g0715200 3-beta hydroxysteroid dehydrogenase/isomerase domain containing
protein
Length = 478
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 138/261 (52%), Gaps = 36/261 (13%)
Query: 27 AVTGGRGFMARHLVAALLRSGEWRVRITDLAPAITLDPVEEKGLLGEALRDGHAVYDSVN 86
AVTGG+GF+ L LLR G VR DL + P ++ LLG +R + +
Sbjct: 15 AVTGGQGFVGSALCLELLRRGAREVRSLDLRAS---SPWSDQ-LLGAGVR-----FFQGD 65
Query: 87 VCDITQLTKAFQGVEVVFHTAA---ADPDINDFQLHYKVNVEGTKNVIDACVTCKVKRLI 143
V + KA +GV+ VFH A+ + ++ +VN+ GT NV+DAC V+RL+
Sbjct: 66 VRKKEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHGVRRLV 125
Query: 144 YTSSSGVVFDGVHGLFDVDESMPYPNKFP-----DAYAQSKAEAEKLVRNSNG------- 191
Y S+ VVF G + + +E++PY FP DAYA+SK+ AE+LV SNG
Sbjct: 126 YVSTYNVVFGG-EPIVNGNEALPY---FPVEDHVDAYARSKSIAEQLVLKSNGRQTKSDK 181
Query: 192 ICELLTCSIRPGSIFGPGDTI-VPHLLSHWR---TMFIIGDGMNCDDFVYVENVVHGHIC 247
L TCSIRP +I+GPG+ +P +LS + F IGD D+VYV+N+V I
Sbjct: 182 SSRLYTCSIRPAAIYGPGEERHLPRILSLAKLGLAFFKIGDPNVKSDWVYVDNLVLALIL 241
Query: 248 AEKTL----STKEGSKISGGK 264
A L ++G ++ G+
Sbjct: 242 ASMGLLDDIPDRKGIPVAAGQ 262
>AK058538
Length = 309
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 86/153 (56%), Gaps = 8/153 (5%)
Query: 103 VFHTAAADPDINDFQLHYKVNVEGTKNVIDACVTCKVKRLIYTSSSGVVFDGVHGLFDVD 162
V HTA+ D+ ++H KVNV GTK ++ A VK +YTSS+ V+ D L + D
Sbjct: 19 VIHTASPHFDLKP-EIHEKVNVGGTKVLLQAAQEAGVKAFVYTSSASVILDHQTELINAD 77
Query: 163 ESMPYP--NKFPDAYAQSKAEAEKLVRNSNGICE-LLTCSIRPGSIFGPGDT-IVPHLLS 218
E P + P+ Y +KA AE V +N E LTC+IRP IFG GD ++P ++S
Sbjct: 78 ERWPLVTGDDQPEYYTTTKAYAETAVLQANRNPENFLTCAIRPTGIFGEGDVQLLPKMVS 137
Query: 219 HWR---TMFIIGDGMNCDDFVYVENVVHGHICA 248
R T F +GD N DF YVENV HGH+ A
Sbjct: 138 ACRKGQTKFQVGDNTNMFDFTYVENVAHGHVLA 170
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,272,364
Number of extensions: 448250
Number of successful extensions: 1036
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 4
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)