Os03g0405000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reticulon family protein.
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Os03g0405000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reticulon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.72 | 0.18 | 12.1 | -0.509 | 0.985 | 0.0236 | -0.256 | -1.01 | -0.152 | 22.8 | 20.5 | 779 | -- | -- |
| 16.65 | 0.19 | 12 | -0.0278 | 1.02 | -0.218 | -0.42 | -- | 0.0256 | 22.8 | 27.8 | 47520 | -- | -- |
| 14.93 | 0.18 | 12.1 | -0.535 | 0.98 | 0.02 | -- | -1.11 | -0.163 | 22.8 | 20.7 | 797 | -- | -- |
| 17.67 | 0.196 | 12 | 0.0178 | 1 | -0.266 | -- | -- | 0.0539 | 22.9 | 27.6 | 47520 | -- | -- |
| 71.04 | 0.393 | 12.1 | -0.667 | -- | 0.345 | -- | -0.956 | -0.262 | -- | 22.2 | 822 | -- | -- |
| 17.8 | 0.198 | 12.1 | -0.28 | 0.991 | -- | -0.546 | -- | -0.0835 | 22.8 | -- | -- | -- | -- |
| 19.05 | 0.204 | 12.1 | -0.258 | 0.994 | -- | -- | -- | -0.0821 | 22.9 | -- | -- | -- | -- |
| 67.76 | 0.383 | 12.1 | -0.517 | -- | 0.542 | -- | -- | -0.277 | -- | 25.2 | 818 | -- | -- |
| 17.68 | 0.196 | 12 | -- | 1 | -0.255 | -- | -- | 0.0479 | 22.9 | 27.5 | 47520 | -- | -- |
| 80.32 | 0.419 | 12 | -0.237 | -- | -- | -- | -- | -0.0753 | -- | -- | -- | -- | -- |
| 20.8 | 0.213 | 12.1 | -- | 0.992 | -- | -- | -- | -0.0533 | 22.9 | -- | -- | -- | -- |
| 71.53 | 0.394 | 12.1 | -- | -- | 0.519 | -- | -- | -0.225 | -- | 25.6 | 828 | -- | -- |
| 81.8 | 0.422 | 12 | -- | -- | -- | -- | -- | -0.049 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.95 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 14.03 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 14 |
| 3 | 14.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 10 | 14.12 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 19 | 14.18 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 27 | 14.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 35 | 14.26 | temperature | 20 | 720 | < th | dose independent | sin | 11 | NA |
| 54 | 14.33 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 56 | 14.34 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 63 | 14.35 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 67 | 14.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 81 | 14.40 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 98 | 14.47 | radiation | 40 | 10 | > th | dose independent | rect. | 13 | 23 |
| 105 | 14.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 124 | 14.54 | radiation | 1 | 1440 | > th | dose dependent | rect. | 5 | 7 |
| 152 | 14.57 | radiation | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 175 | 14.60 | radiation | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 182 | 14.61 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 189 | 14.61 | radiation | 20 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 199 | 14.64 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 222 | 14.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 232 | 14.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 235 | 14.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 241 | 14.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 265 | 14.67 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 268 | 14.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 274 | 14.67 | radiation | 40 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 280 | 14.68 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 285 | 14.68 | radiation | 20 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 311 | 14.69 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 316 | 14.70 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 324 | 14.71 | radiation | 1 | 1440 | > th | dose dependent | sin | 8 | NA |
| 325 | 14.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 353 | 14.73 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 379 | 14.75 | radiation | 30 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 386 | 14.75 | radiation | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 398 | 14.76 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 400 | 14.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 462 | 14.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 496 | 14.79 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 22 |
| 509 | 14.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 532 | 14.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 533 | 14.81 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 552 | 14.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 560 | 14.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 576 | 14.82 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 660 | 14.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 682 | 14.86 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 705 | 14.86 | radiation | 10 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 733 | 14.87 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 3 |
| 775 | 14.87 | radiation | 40 | 1440 | < th | dose dependent | sin | 7 | NA |
| 810 | 14.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 839 | 14.89 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 863 | 14.90 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 892 | 14.90 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 896 | 14.91 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 897 | 14.91 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 930 | 14.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 981 | 14.92 | radiation | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 982 | 14.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 998 | 14.92 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |