Os01g0528800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cinnamyl alcohol dehydrogenase.
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Os01g0528800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cinnamyl alcohol dehydrogenase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.6 | 0.203 | 13.2 | 0.749 | 0.346 | -0.306 | -0.444 | -0.967 | 0.211 | 14.5 | 31.3 | 11 | -- | -- |
| 19.36 | 0.206 | 13.2 | 0.592 | 0.357 | -0.294 | -0.128 | -- | 0.171 | 14.5 | 31.3 | 11 | -- | -- |
| 19.07 | 0.205 | 13.2 | 0.675 | 0.354 | -0.288 | -- | -0.538 | 0.193 | 14.4 | 31.3 | 11 | -- | -- |
| 19.41 | 0.207 | 13.2 | 0.59 | 0.358 | -0.289 | -- | -- | 0.171 | 14.4 | 31.3 | 11 | -- | -- |
| 23.98 | 0.229 | 13.2 | 0.599 | -- | -0.647 | -- | -0.628 | 0.129 | -- | 31.3 | 11 | -- | -- |
| 20.45 | 0.212 | 13.2 | 0.657 | 0.453 | -- | -0.0832 | -- | 0.221 | 14.4 | -- | -- | -- | -- |
| 20.47 | 0.212 | 13.2 | 0.655 | 0.453 | -- | -- | -- | 0.221 | 14.4 | -- | -- | -- | -- |
| 24.46 | 0.231 | 13.2 | 0.498 | -- | -0.654 | -- | -- | 0.101 | -- | 31.3 | 11 | -- | -- |
| 27.7 | 0.245 | 13.2 | -- | 0.267 | -0.625 | -- | -- | 0.0737 | 14.2 | 51.07 | 27 | -- | -- |
| 32.61 | 0.267 | 13.2 | 0.636 | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
| 31.77 | 0.264 | 13.2 | -- | 0.44 | -- | -- | -- | 0.148 | 14.3 | -- | -- | -- | -- |
| 30.53 | 0.257 | 13.2 | -- | -- | -0.806 | -- | -- | 0.0224 | -- | 31.4 | 20 | -- | -- |
| 43.27 | 0.307 | 13.2 | -- | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.35 | temperature | 20 | 30 | > th | dose dependent | sin | 6 | NA |
| 3 | 16.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 15 | 16.82 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 38 | 16.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 45 | 17.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 55 | 17.09 | temperature | 30 | 30 | < th | dose dependent | sin | 5 | NA |
| 63 | 17.13 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 8 |
| 74 | 17.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 77 | 17.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 81 | 17.17 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 10 |
| 83 | 17.17 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 14 |
| 95 | 17.22 | temperature | 25 | 10 | < th | dose independent | rect. | 3 | 5 |
| 96 | 17.22 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 6 |
| 110 | 17.25 | temperature | 25 | 10 | > th | dose independent | rect. | 24 | 12 |
| 143 | 17.32 | temperature | 25 | 90 | < th | dose independent | sin | 7 | NA |
| 152 | 17.34 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 5 |
| 162 | 17.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 16 |
| 179 | 17.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 18 |
| 193 | 17.43 | temperature | 25 | 90 | > th | dose independent | sin | 6 | NA |
| 205 | 17.45 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 2 |
| 217 | 17.46 | temperature | 25 | 10 | < th | dose independent | rect. | 3 | 9 |
| 227 | 17.48 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 11 |
| 249 | 17.51 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 262 | 17.52 | temperature | 25 | 10 | < th | dose independent | rect. | 3 | 11 |
| 300 | 17.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 323 | 17.57 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 8 |
| 324 | 17.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 362 | 17.61 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 14 |
| 375 | 17.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 546 | 17.77 | temperature | 10 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 568 | 17.79 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 646 | 17.87 | radiation | 10 | 270 | < th | dose dependent | sin | 9 | NA |
| 648 | 17.87 | humidity | 50 | 30 | > th | dose dependent | rect. | 3 | 14 |
| 743 | 17.94 | wind | 9 | 90 | < th | dose dependent | rect. | 6 | 7 |
| 748 | 17.94 | humidity | 50 | 30 | > th | dose dependent | rect. | 3 | 16 |
| 766 | 17.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 8 |
| 776 | 17.96 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 6 |
| 887 | 18.03 | wind | 5 | 90 | < th | dose independent | rect. | 6 | 7 |
| 937 | 18.07 | radiation | 10 | 90 | < th | dose dependent | sin | 4 | NA |
| 1000 | 18.10 | wind | 7 | 90 | < th | dose dependent | rect. | 6 | 21 |