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Os06g0623300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NAD-dependent epimerase/dehydratase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0108) R2 : 0.711
β1 : -1.12 (0.0395) R2dD : 0.53 R2D : 0.268
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.526 (0.023) R2dN8 : 0.444 R2N8 : 0.181
σ : 0.202
deviance : 18.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.94 0.188 13 -1.06 0.0887 0.29 -0.381 0.549 -0.542 20.7 0.3522 1383 -- --
15.98 0.186 13 -1.05 0.0883 0.44 -0.383 -- -0.546 20.7 0.4555 1384 -- --
16.31 0.188 13 -1.06 0.0893 0.219 -- 0.788 -0.538 22 0.9552 1500 -- --
16.34 0.188 13 -1.04 0.0994 0.427 -- -- -0.545 22.2 0.8284 1500 -- --
16.87 0.191 13 -1.06 -- 0.241 -- 0.67 -0.542 -- 0.7817 1500 -- --
17.81 0.198 13 -1.13 0.0878 -- -0.384 -- -0.526 20.8 -- -- -- --
18.22 0.2 13 -1.12 0.0933 -- -- -- -0.527 22.4 -- -- -- --
16.91 0.192 13 -1.03 -- 0.431 -- -- -0.546 -- 0.703 1500 -- --
41.53 0.3 13 -- 0.117 0.849 -- -- -0.468 21.9 1.04 1964 -- --
18.76 0.202 13 -1.12 -- -- -- -- -0.526 -- -- -- -- --
51.5 0.336 12.9 -- 0.0893 -- -- -- -0.402 21.5 -- -- -- --
41.83 0.301 13 -- -- 0.926 -- -- -0.47 -- 0.4416 1621 -- --
51.97 0.336 12.9 -- -- -- -- -- -0.402 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.77 wind 1.0 43200 > th dose independent rect. 23 7
3 14.86 wind 1.0 43200 < th dose independent rect. 23 8
4 14.87 wind 1.0 14400 > th dose independent rect. 20 10
6 14.90 wind 1.0 43200 < th dose independent rect. 4 4
10 14.95 wind 1.0 43200 > th dose independent rect. 4 4
12 14.96 wind 1.0 43200 > th dose independent rect. 5 2
24 15.00 wind 1.0 43200 < th dose dependent rect. 4 3
33 15.03 wind 1.0 43200 < th dose dependent rect. 2 7
48 15.09 wind 1.0 14400 > th dose independent rect. 2 4
52 15.09 wind 1.0 43200 < th dose dependent rect. 2 9
59 15.11 wind 1.0 43200 > th dose independent rect. 2 7
60 15.11 wind 1.0 43200 < th dose dependent rect. 2 12
67 15.14 wind 1.0 43200 < th dose independent rect. 5 2
69 15.14 wind 1.0 14400 < th dose independent rect. 2 5
114 15.22 wind 1.0 43200 < th dose independent rect. 2 12
120 15.24 radiation 20.0 1440 < th dose independent rect. 11 2
131 15.24 humidity 90.0 270 < th dose independent rect. 18 16
139 15.26 humidity 80.0 43200 > th dose independent rect. 6 1
141 15.26 wind 1.0 43200 > th dose independent rect. 2 11
146 15.27 wind 1.0 43200 > th dose independent sin 8 NA
147 15.27 wind 1.0 43200 < th dose independent sin 8 NA
149 15.27 wind 1.0 43200 < th dose independent rect. 2 7
150 15.27 wind 1.0 43200 > th dose independent rect. 2 9
188 15.33 humidity 80.0 43200 < th dose independent rect. 6 2
208 15.35 humidity 80.0 1440 > th dose dependent rect. 10 5
210 15.35 wind 1.0 43200 < th dose dependent rect. 23 9
221 15.36 wind 1.0 43200 < th dose dependent rect. 2 19
238 15.38 humidity 90.0 270 > th dose independent rect. 24 20
242 15.39 humidity 80.0 1440 > th dose independent rect. 10 6
259 15.41 humidity 80.0 1440 > th dose independent rect. 9 8
264 15.41 humidity 80.0 1440 > th dose dependent rect. 9 8
286 15.44 humidity 80.0 1440 > th dose independent rect. 11 4
297 15.45 humidity 80.0 1440 < th dose independent rect. 10 5
305 15.46 wind 1.0 14400 > th dose independent sin 12 NA
345 15.49 humidity 70.0 30 > th dose dependent sin 6 NA
346 15.49 humidity 80.0 1440 > th dose dependent rect. 13 1
366 15.51 precipitation 0.1 720 < th dose independent rect. 19 16
371 15.51 humidity 80.0 90 > th dose dependent rect. 1 14
372 15.51 precipitation 0.1 720 < th dose dependent rect. 19 16
388 15.52 wind 3.0 14400 < th dose dependent rect. 23 1
393 15.52 humidity 80.0 270 > th dose dependent rect. 23 20
396 15.53 radiation 20.0 1440 > th dose independent rect. 11 3
457 15.57 humidity 70.0 270 > th dose dependent rect. 22 8
462 15.57 humidity 80.0 90 > th dose dependent rect. 1 10
478 15.58 humidity 90.0 270 < th dose dependent rect. 19 14
491 15.59 wind 1.0 43200 < th dose dependent sin 6 NA
518 15.61 temperature 20.0 4320 < th dose independent rect. 17 2
531 15.61 wind 5.0 43200 < th dose dependent rect. 7 1
536 15.62 precipitation 0.1 270 < th dose independent sin 11 NA
538 15.62 humidity 80.0 1440 > th dose independent rect. 13 2
547 15.62 precipitation 0.1 270 < th dose dependent sin 11 NA
552 15.62 wind 1.0 43200 < th dose dependent rect. 20 11
556 15.62 humidity 50.0 270 > th dose dependent rect. 24 17
580 15.64 humidity 90.0 270 > th dose independent rect. 24 10
601 15.65 humidity 90.0 270 > th dose independent rect. 24 14
613 15.66 temperature 20.0 270 > th dose independent rect. 22 8
633 15.67 humidity 90.0 270 < th dose independent sin 9 NA
635 15.67 wind 1.0 4320 < th dose independent rect. 19 3
674 15.68 humidity 80.0 1440 > th dose independent rect. 22 19
696 15.69 radiation 10.0 1440 < th dose independent rect. 9 7
767 15.72 temperature 20.0 4320 > th dose independent rect. 17 2
778 15.72 temperature 20.0 270 > th dose independent rect. 11 18
782 15.72 wind 3.0 14400 > th dose dependent rect. 8 1
783 15.72 radiation 20.0 1440 < th dose dependent rect. 10 4
798 15.73 wind 3.0 14400 > th dose independent rect. 8 1
799 15.73 humidity 80.0 1440 < th dose independent rect. 13 2
831 15.74 temperature 20.0 4320 < th dose independent rect. 12 7
849 15.74 wind 1.0 14400 < th dose dependent rect. 14 16
860 15.75 humidity 90.0 270 < th dose independent rect. 3 7
938 15.77 precipitation 0.1 720 < th dose independent rect. 15 16
943 15.77 temperature 20.0 270 > th dose independent rect. 22 21
947 15.77 radiation 30.0 1440 < th dose dependent rect. 12 1
951 15.77 precipitation 0.1 720 < th dose dependent rect. 15 16
954 15.77 wind 1.0 14400 < th dose dependent rect. 13 18
961 15.78 temperature 20.0 4320 > th dose independent rect. 12 7
1000 15.79 precipitation 0.1 270 > th dose independent sin 11 NA