Os09g0516500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reticulon family protein.
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Os09g0516500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reticulon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.54 | 0.228 | 10 | 0.405 | 0.808 | 0.628 | -0.271 | -0.285 | 0.0889 | 2.8 | 1014 | 3689 | -- | -- |
| 23.48 | 0.226 | 10 | 0.415 | 0.807 | 0.633 | -0.279 | -- | 0.0924 | 2.8 | 1014 | 3589 | -- | -- |
| 23.42 | 0.225 | 10 | 0.359 | 0.804 | 0.653 | -- | -0.333 | 0.0772 | 2.81 | 1014 | 3595 | -- | -- |
| 23.71 | 0.227 | 10 | 0.388 | 0.808 | 0.641 | -- | -- | 0.0815 | 2.76 | 1014 | 3570 | -- | -- |
| 60.69 | 0.363 | 10 | 0.371 | -- | 0.732 | -- | -0.428 | 0.084 | -- | 1014 | 3634 | -- | -- |
| 31.43 | 0.263 | 9.99 | 0.453 | 0.829 | -- | -0.334 | -- | 0.157 | 2.83 | -- | -- | -- | -- |
| 31.81 | 0.264 | 9.99 | 0.461 | 0.829 | -- | -- | -- | 0.159 | 2.84 | -- | -- | -- | -- |
| 61.18 | 0.364 | 10 | 0.421 | -- | 0.708 | -- | -- | 0.0939 | -- | 1014 | 3588 | -- | -- |
| 25.91 | 0.237 | 10 | -- | 0.854 | 0.705 | -- | -- | 0.0319 | 2.75 | 1014 | 33980 | -- | -- |
| 71.51 | 0.395 | 9.98 | 0.496 | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
| 37.42 | 0.286 | 10 | -- | 0.838 | -- | -- | -- | 0.108 | 2.85 | -- | -- | -- | -- |
| 63.1 | 0.37 | 10 | -- | -- | 0.658 | -- | -- | -0.025 | -- | 1014 | 25671 | -- | -- |
| 78.01 | 0.412 | 10 | -- | -- | -- | -- | -- | 0.125 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.84 | temperature | 20 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 2 | 23.85 | temperature | 20 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 7 | 23.90 | humidity | 60 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 41 | 24.08 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 48 | 24.10 | humidity | 60 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 68 | 24.15 | humidity | 60 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 77 | 24.16 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 13 |
| 78 | 24.17 | temperature | 20 | 4320 | < th | dose dependent | sin | 7 | NA |
| 105 | 24.20 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 122 | 24.21 | temperature | 20 | 4320 | < th | dose dependent | rect. | 13 | 18 |
| 215 | 24.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 313 | 24.38 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 351 | 24.44 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 355 | 24.44 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 367 | 24.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 394 | 24.52 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 403 | 24.53 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 405 | 24.53 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 12 | 20 |
| 415 | 24.54 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 422 | 24.54 | humidity | 50 | 43200 | < th | dose dependent | sin | 7 | NA |
| 440 | 24.55 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 20 |
| 444 | 24.55 | atmosphere | 1010 | 4320 | > th | dose dependent | sin | 21 | NA |
| 475 | 24.57 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 483 | 24.57 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 11 | 13 |
| 507 | 24.58 | atmosphere | 1010 | 4320 | > th | dose dependent | no | NA | NA |
| 521 | 24.58 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 13 | 21 |
| 526 | 24.58 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 16 | 22 |
| 530 | 24.58 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 9 | 23 |
| 544 | 24.59 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 17 | 7 |
| 559 | 24.59 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 15 | 19 |
| 587 | 24.59 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 597 | 24.60 | temperature | 25 | 720 | < th | dose dependent | sin | 21 | NA |
| 599 | 24.60 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 602 | 24.60 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 616 | 24.60 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 646 | 24.61 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 647 | 24.61 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 707 | 24.62 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 730 | 24.62 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 22 |
| 810 | 24.65 | humidity | 50 | 43200 | > th | dose independent | sin | 8 | NA |
| 812 | 24.65 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 3 | 21 |
| 847 | 24.66 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 14 | NA |
| 867 | 24.66 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 868 | 24.66 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 914 | 24.67 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 4 | 20 |
| 956 | 24.68 | atmosphere | 1010 | 4320 | > th | dose dependent | sin | 8 | NA |
| 960 | 24.68 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 963 | 24.68 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 9 | 5 |