BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0516500 Os09g0516500|012-091-H12
         (187 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43420.1  | chr2:18031493-18034936 REVERSE LENGTH=562          115   2e-26
AT2G26260.1  | chr2:11178237-11182872 FORWARD LENGTH=565          111   2e-25
AT4G11220.1  | chr4:6838176-6839578 REVERSE LENGTH=272             47   8e-06

>AT2G43420.1 | chr2:18031493-18034936 REVERSE LENGTH=562
          Length = 561

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 90/151 (59%)

Query: 6   ADILLWRDEKKTFSYVTVLFLLFYWFLLSDRTFVSSAAKILLVISLALFIHGVLPPQVFG 65
           ADILLWR+EKKTF    VL L +YWF  S  TF SSAA++L + ++AL+    +P ++FG
Sbjct: 380 ADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIFAVALYGVSFVPSKIFG 439

Query: 66  FTVEKVTSDYFEVSQETLKNTLVWMASIWNGGIYKLRVLAEGDDWTTFLKAFAFLYCVKV 125
           F V K+    FE+S+  +++    +  +WN G+   + L+ G DW  F K    LY +K+
Sbjct: 440 FQVNKIPPWRFEISESAVRDLSSDIVVVWNQGVRSFKSLSSGGDWIKFFKIAGSLYLLKL 499

Query: 126 MLNLQFRMLMGLVLAFMFVVFIVYEQCEEEI 156
           +++      +  V++F F  F +YEQ E E+
Sbjct: 500 IVSRSLAAFLFTVMSFSFTGFFIYEQYELEL 530



>AT2G26260.1 | chr2:11178237-11182872 FORWARD LENGTH=565
          Length = 564

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 96/155 (61%)

Query: 6   ADILLWRDEKKTFSYVTVLFLLFYWFLLSDRTFVSSAAKILLVISLALFIHGVLPPQVFG 65
           AD LLW+D K+T   + +L  ++Y F+ +  T V++ +K LLV S+ LF+HG+LP ++FG
Sbjct: 385 ADTLLWKDLKQTLIAIFILISIYYNFVATGSTVVTALSKALLVASVFLFLHGILPEKIFG 444

Query: 66  FTVEKVTSDYFEVSQETLKNTLVWMASIWNGGIYKLRVLAEGDDWTTFLKAFAFLYCVKV 125
           +TVEK+ +  F +S+++  +  + + S WN  +  LR L +G+DW+ F K    L  + +
Sbjct: 445 YTVEKIPASQFHLSKDSSHDLSLSVISSWNTTVKALRSLCQGNDWSFFFKVVFVLLALSL 504

Query: 126 MLNLQFRMLMGLVLAFMFVVFIVYEQCEEEIDSLV 160
              +    +  + L   F+ F+VYE+ E+EIDS+V
Sbjct: 505 AGAISLHSIFVIGLPIAFLAFLVYEKKEQEIDSIV 539



>AT4G11220.1 | chr4:6838176-6839578 REVERSE LENGTH=272
          Length = 271

 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 24/188 (12%)

Query: 5   AADILLWRDEKKT---FSYVT---VLFLLFYWFLLS--DRTFVSSAAKILLVISLALFIH 56
            ADI +W+D+K +   F   T   VLF L  + LL+      + + A + L  +  +FIH
Sbjct: 85  PADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIH 144

Query: 57  GVLPPQVFGFTVEKVTSDYFEVSQETLKNTLVWMASIWNGGIYKLRVLAEGDDWTTFLKA 116
              PP++              + +E L      +    N GI  LR +A G D   FL A
Sbjct: 145 KS-PPKI----------PEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSA 193

Query: 117 FAFLYCVKVMLNL-QFRMLMGLVLAFMFVVFIVYEQCEEEIDSLVAFASVKVKS----LV 171
            A L+ + ++     F  L  + L  +F V + Y++ E+++DS    A  ++K     L 
Sbjct: 194 IAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLD 253

Query: 172 GKVIGNLP 179
            KV   +P
Sbjct: 254 AKVFSKIP 261



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.142    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,677,213
Number of extensions: 131977
Number of successful extensions: 438
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 4
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 108 (46.2 bits)