BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0355200 Os03g0355200|J080005K13
(131 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0355200 WD40-like domain containing protein 274 1e-74
Os11g0660300 WD40-like domain containing protein 75 2e-14
Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3... 74 4e-14
Os05g0144100 WD40-like domain containing protein 69 1e-12
Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding ... 68 2e-12
Os03g0625900 WD40-like domain containing protein 67 3e-12
Os05g0407200 WD40-like domain containing protein 67 3e-12
Os01g0322800 WD40-like domain containing protein 67 3e-12
>Os03g0355200 WD40-like domain containing protein
Length = 131
Score = 274 bits (700), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MILLSFQVLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEG 60
MILLSFQVLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEG
Sbjct: 1 MILLSFQVLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEG 60
Query: 61 YYLATSSYDTKAALWSARDYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTIKIWSCR 120
YYLATSSYDTKAALWSARDYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTIKIWSCR
Sbjct: 61 YYLATSSYDTKAALWSARDYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTIKIWSCR 120
Query: 121 SRAQDNAMELD 131
SRAQDNAMELD
Sbjct: 121 SRAQDNAMELD 131
>Os11g0660300 WD40-like domain containing protein
Length = 323
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 66/121 (54%)
Query: 8 VLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEGYYLATSS 67
VL V++SP+G L+A GS D ++D + L+ + H + + F P + + L T+S
Sbjct: 163 VLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTAS 222
Query: 68 YDTKAALWSARDYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTIKIWSCRSRAQDNA 127
D ++ A++ I ++ H S V S+D+S DG + T S DRT+++W +RA
Sbjct: 223 DDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQT 282
Query: 128 M 128
M
Sbjct: 283 M 283
>Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
(WD-repeat protein BIG-3)
Length = 324
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 10/116 (8%)
Query: 11 VSFSPNGYLVATGSEDNFCRIWDLRT---------KRMLYSIPAHKSLISHVKFEPQEGY 61
++FSP+G L+A+ S+D RIWDL R++ ++ H + + F P G
Sbjct: 68 LAFSPDGRLIASASDDRTVRIWDLGDGGGGGGGGEPRLMKTLSGHTNYAFCLAFSPH-GN 126
Query: 62 YLATSSYDTKAALWSARDYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTIKIW 117
LA+ S+D +W R + ++ L AH VTS+D + DG IV+ S+D +IW
Sbjct: 127 MLASGSFDETVRVWEVRSGRCLRVLPAHSEPVTSVDFNRDGAMIVSGSYDGLCRIW 182
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 11 VSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEGYYLATSSYDT 70
++FSP+G ++A+GS D R+W++R+ R L +PAH ++ V F ++G + + SYD
Sbjct: 119 LAFSPHGNMLASGSFDETVRVWEVRSGRCLRVLPAHSEPVTSVDFN-RDGAMIVSGSYDG 177
Query: 71 KAALWSARDYKPIKSLVAHESKVTSL-DISGDGQQIVTVSHDRTIKIWS 118
+W + IK+L+ ES S S +G+ ++ + D +++W+
Sbjct: 178 LCRIWDSATGHCIKTLIDDESPPVSFAKFSPNGKFVLAATLDSKLRLWN 226
>Os05g0144100 WD40-like domain containing protein
Length = 329
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 5 SFQVLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEGYYLA 64
SF + V FS +G + G+ D ++DLR ++ I AH + ++ V F + G L
Sbjct: 59 SFGIFSVKFSKDGQEIVVGNSDRSINVYDLRANKVSVRIRAHAADVNAVTFADESGNLLY 118
Query: 65 TSSYDTKAALWSAR---DYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTIKIWSCR 120
+ S D +W R KP L H +T +D GDG+ ++ D+TIK+W R
Sbjct: 119 SGSDDNLCKVWDRRCLAREKPAGVLTGHLDGITFIDSRGDGRYFISNCKDQTIKLWDVR 177
>Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP)
(U5 snRNP- specific 40 kDa protein) (38 kDa splicing
factor)
Length = 343
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 6 FQVLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEGYYLAT 65
+Q+ VSFS V TG DN + WDLR + + H+ +I+ ++ P +G YL T
Sbjct: 181 YQITAVSFSEAADKVFTGGLDNDVKWWDLRKNEVTEYLKGHQDMITGMQLSP-DGSYLLT 239
Query: 66 SSYDTKAALWSARDYKP----IKSLVAH----ESKVTSLDISGDGQQIVTVSHDRTIKIW 117
++ D + +W R Y P IK+L H E + S D +++ S DR + IW
Sbjct: 240 NAMDNELKIWDLRPYAPENRNIKTLTGHQHNFEKNLLKCSWSPDNRKVTAGSADRMVYIW 299
Query: 118 SCRSR 122
SR
Sbjct: 300 DTTSR 304
>Os03g0625900 WD40-like domain containing protein
Length = 511
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 5 SFQVLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEGYYLA 64
S QVL ++ S +G +A+G D +WD+R++ + + H+ IS + F P + L
Sbjct: 219 SKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQAFSGHRGAISCLSFGP-DSSELF 277
Query: 65 TSSYDTKAALWSARDYKPIKSLVAHESKVTSLD-ISGDGQQIVTVSHDRTIKIWSCRSRA 123
+ S+D K W+A D + L H+++V ++D +S D +++TV+ DRT+ +W +
Sbjct: 278 SGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKD--RLLTVARDRTMHLWKIPEES 335
Query: 124 Q 124
Q
Sbjct: 336 Q 336
>Os05g0407200 WD40-like domain containing protein
Length = 463
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 2 ILLSFQVLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEGY 61
+ +F + V FS +G + GS D+ ++DL ++ +PAH S ++ V F + G+
Sbjct: 207 VRYTFGIFSVKFSSDGRELVAGSNDDSIYVYDLVANKLTLRLPAHHSDVNTVAFADETGH 266
Query: 62 YLATSSYDTKAALWSAR---DYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTIKIWS 118
+ + S D +W R +P L H +T +D GDG+ ++ D+ IK+W
Sbjct: 267 LIYSGSDDNLCKVWDRRCLSTEEPAGVLTGHLHGITHIDSRGDGRCFISNGKDQAIKMWD 326
Query: 119 CR 120
R
Sbjct: 327 IR 328
>Os01g0322800 WD40-like domain containing protein
Length = 517
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 8 VLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIP-AHKSLISHVKFEPQEGYYLATS 66
VL V FS + ++A+GS+D ++W +RT + L + AH ++ V F ++G + +S
Sbjct: 271 VLSVDFSRDSEMLASGSQDGKIKVWRIRTGQCLRRLERAHAKGVTSVTFS-RDGTQILSS 329
Query: 67 SYDTKAALWSARDYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTIKIWSCRS 121
S+DT A + + K +K H S V S DG +++T S D T+K+W ++
Sbjct: 330 SFDTTARVHGLKSGKMLKEFRGHNSYVNCAIFSTDGSRVITASSDCTVKVWDTKT 384
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,327,205
Number of extensions: 147728
Number of successful extensions: 1259
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1295
Number of HSP's successfully gapped: 15
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)