BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0307800 Os03g0307800|AJ421722
(895 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0307800 SET domain-containing protein 1706 0.0
Os06g0275500 Similar to Polycomb protein EZ1 (Enhancer of z... 633 0.0
Os12g0613200 Similar to Histone-lysine N-methyltransferase,... 100 8e-21
Os01g0218800 Similar to Trithorax 5 (Fragment) 83 1e-15
Os02g0611300 Nuclear protein SET domain containing protein 81 3e-15
Os09g0134500 Similar to Trithorax-like protein 1 80 5e-15
Os04g0429100 Similar to SET domain-containing protein SET102 80 6e-15
Os09g0556700 Nuclear protein SET domain containing protein 77 7e-14
Os08g0442500 74 6e-13
Os02g0554000 Zinc finger, CW-type domain containing protein 73 1e-12
Os09g0307800 Nuclear protein SET domain containing protein 70 5e-12
>Os03g0307800 SET domain-containing protein
Length = 895
Score = 1706 bits (4417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 823/882 (93%), Positives = 823/882 (93%)
Query: 14 QRPKRPDQGPSGKDAAGLVALHGKLAQLKRQVQSTRLAAIKERVEANRKALQVHTCALFD 73
QRPKRPDQGPSGKDAAGLVALHGKLAQLKRQVQSTRLAAIKERVEANRKALQVHTCALFD
Sbjct: 14 QRPKRPDQGPSGKDAAGLVALHGKLAQLKRQVQSTRLAAIKERVEANRKALQVHTCALFD 73
Query: 74 XXXXXXXXXXXXXXXNALSRGAAEGHRRFVGWDSASGPGERELVHVQEENXXXXXXXXXX 133
NALSRGAAEGHRRFVGWDSASGPGERELVHVQEEN
Sbjct: 74 VAAAAEVASRGAEGGNALSRGAAEGHRRFVGWDSASGPGERELVHVQEENLVAGTLVLSS 133
Query: 134 XXXXXXXHRTVVQLVKLPVVDKIPPYTTWIFLDKNQRMADDQSVGRRRIYYDPIVNEALI 193
HRTVVQLVKLPVVDKIPPYTTWIFLDKNQRMADDQSVGRRRIYYDPIVNEALI
Sbjct: 134 SGGSGASHRTVVQLVKLPVVDKIPPYTTWIFLDKNQRMADDQSVGRRRIYYDPIVNEALI 193
Query: 194 CXXXXXXXXXXXXXKHVFTEGEDQLIWKATQDHGLSREVLNVLCQFVDATPSEIEERSEV 253
C KHVFTEGEDQLIWKATQDHGLSREVLNVLCQFVDATPSEIEERSEV
Sbjct: 194 CSESDDDVPEPEEEKHVFTEGEDQLIWKATQDHGLSREVLNVLCQFVDATPSEIEERSEV 253
Query: 254 LFEKYEKQSQSSYKTDLQLFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNLVFPSEK 313
LFEKYEKQSQSSYKTDLQLFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNLVFPSEK
Sbjct: 254 LFEKYEKQSQSSYKTDLQLFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNLVFPSEK 313
Query: 314 QPYGHELDENKRPCGDQCYLRRREVYQDTCNDDRNACTTYNMDSRSSSLKVSATILSESE 373
QPYGHELDENKRPCGDQCYLRRREVYQDTCNDDRNACTTYNMDSRSSSLKVSATILSESE
Sbjct: 314 QPYGHELDENKRPCGDQCYLRRREVYQDTCNDDRNACTTYNMDSRSSSLKVSATILSESE 373
Query: 374 DSNRDEDNIKSTSIVETSRSKITNSEYADKSVTPPPGDASETENVSPDMPLRTLGRRKIS 433
DSNRDEDNIKSTSIVETSRSKITNSEYADKSVTPPPGDASETENVSPDMPLRTLGRRKIS
Sbjct: 374 DSNRDEDNIKSTSIVETSRSKITNSEYADKSVTPPPGDASETENVSPDMPLRTLGRRKIS 433
Query: 434 KHASKSNDHSPDKRQKIYSSPFPFAMSVLNKQSVPEIGETCPDSIESAVDQLPSLDDPNK 493
KHASKSNDHSPDKRQKIYSSPFPFAMSVLNKQSVPEIGETCPDSIESAVDQLPSLDDPNK
Sbjct: 434 KHASKSNDHSPDKRQKIYSSPFPFAMSVLNKQSVPEIGETCPDSIESAVDQLPSLDDPNK 493
Query: 494 KISTKDMCAGSTTNTTENTLRDNNNNLFISNKEHSISHWSALERDLYLKGIEIFGKNSCL 553
KISTKDMCAGSTTNTTENTLRDNNNNLFISNKEHSISHWSALERDLYLKGIEIFGKNSCL
Sbjct: 494 KISTKDMCAGSTTNTTENTLRDNNNNLFISNKEHSISHWSALERDLYLKGIEIFGKNSCL 553
Query: 554 IARNLLSGLKTCMEVASYMYNNGAAMAKRPLSGKSILGDFAEAEQGYMEQDLVARTRICR 613
IARNLLSGLKTCMEVASYMYNNGAAMAKRPLSGKSILGDFAEAEQGYMEQDLVARTRICR
Sbjct: 554 IARNLLSGLKTCMEVASYMYNNGAAMAKRPLSGKSILGDFAEAEQGYMEQDLVARTRICR 613
Query: 614 RKGRARKLKYTWKSAGHPTVRKRIGDGKQWYTQYNPCGCQQMCGKDCACVENGTCCEKYC 673
RKGRARKLKYTWKSAGHPTVRKRIGDGKQWYTQYNPCGCQQMCGKDCACVENGTCCEKYC
Sbjct: 614 RKGRARKLKYTWKSAGHPTVRKRIGDGKQWYTQYNPCGCQQMCGKDCACVENGTCCEKYC 673
Query: 674 GCSKSCKNRFRGCHCAKSQCRSRQCPCFAASRECDPDVCRNCWVSCGDGSLGEPLARGDG 733
GCSKSCKNRFRGCHCAKSQCRSRQCPCFAASRECDPDVCRNCWVSCGDGSLGEPLARGDG
Sbjct: 674 GCSKSCKNRFRGCHCAKSQCRSRQCPCFAASRECDPDVCRNCWVSCGDGSLGEPLARGDG 733
Query: 734 YQCGNMXXXXXXXXXXXXXXSDVAGWGAFIKNPVNRNDYLGEYTGELISHREADKRGKIY 793
YQCGNM SDVAGWGAFIKNPVNRNDYLGEYTGELISHREADKRGKIY
Sbjct: 734 YQCGNMKLLLKQQQRILLGKSDVAGWGAFIKNPVNRNDYLGEYTGELISHREADKRGKIY 793
Query: 794 DRANSSFLFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIYAKDRIEA 853
DRANSSFLFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIYAKDRIEA
Sbjct: 794 DRANSSFLFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIYAKDRIEA 853
Query: 854 SEELFYDYRYGPDQAPAWARRPEGSKKDEASVSHHRAHKVAR 895
SEELFYDYRYGPDQAPAWARRPEGSKKDEASVSHHRAHKVAR
Sbjct: 854 SEELFYDYRYGPDQAPAWARRPEGSKKDEASVSHHRAHKVAR 895
>Os06g0275500 Similar to Polycomb protein EZ1 (Enhancer of zeste protein 1)
Length = 896
Score = 633 bits (1632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/894 (44%), Positives = 508/894 (56%), Gaps = 61/894 (6%)
Query: 38 LAQLKRQVQSTRLAAIKERVEANRKALQ---VHTCALFDXXXXXXXXXXXXXXXNALSRG 94
+ LK+++ S R I++RVE N L +H+ L N L++
Sbjct: 26 IDSLKKKITSDRFVYIQKRVEENSIKLSPITLHSHNL-SKNRQTSTSNSTDLVSNLLTKR 84
Query: 95 AAEGHRRFVGWDS-ASGPGERELVHVQEENXXXXXXXXXXXXXXXXXHRTVVQLVKLPVV 153
+ +S S P E E + Q+E R V+ ++LP V
Sbjct: 85 KEDA---LCAVNSRESSPDESEGANCQDE------CSSTVIVGGNLSARNSVRPIRLPEV 135
Query: 154 DKIPPYTTWIFLDKNQRMADDQSV-GRRRIYYDPIVNEALICXXXXXXXXXXXXXKHVFT 212
+PPYTTWIFLD+NQRM +DQSV GRRRIYYD EALIC K F
Sbjct: 136 ATLPPYTTWIFLDRNQRMQEDQSVLGRRRIYYDTNCGEALICSDSEDEAVEDEEEKKEFK 195
Query: 213 EGEDQLIWKATQDHGLSREVLNVLCQFVDATPSEIEERSEVL-FEKYEKQSQSSYKTDLQ 271
+ ED +I Q+ G+S VL L + ++ P +I+ R E+L EK E S+ + +++
Sbjct: 196 DSEDCIIRMTIQECGMSDAVLETLARDIERAPDDIKARYEILQGEKPEGSSKKVSELNVK 255
Query: 272 L---FLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNLVFPSEKQPYGHELDENKRPCG 328
+ + DK +D ALDSFDNLFCRRCLVFDC+LHGCSQ+LVFP+EKQ DE PCG
Sbjct: 256 MEDVYGDKDLDAALDSFDNLFCRRCLVFDCKLHGCSQDLVFPTEKQAPLCSSDEGT-PCG 314
Query: 329 DQCY--LRRREVYQDTCND---DRNACTTYNMDSRSSSLKVSATILSESEDSNRDEDNIK 383
CY + + + + + D T+ N+ + S K + S + + +
Sbjct: 315 IHCYKLVSKPDAIMEIDSHLLVDVEEPTSDNLKDQIGSNK--KKLGSSGQKTKSQQSESS 372
Query: 384 STSIVETSRSKITNSEYADKSVTPPPGDASETENVSPDMPLRT---LGRRKISKHASKSN 440
ST+ V + S+ ++KS PG + + T + R +
Sbjct: 373 STARVSSESSESEVQLLSNKSPQHSPGLSKNKLGAKGGIKKSTNRRIAERILMSVKKGQQ 432
Query: 441 DHSPDKRQKIYSSPFPFAMSVLNKQSVPEIGETCPDSIESAVDQLPSLDDPNKKISTKDM 500
+ SPD + +P M + + + DS+ S+ PS KK + +
Sbjct: 433 EMSPDSNSIVNGCHWPRDMKLRS-----DTRSGIKDSVVSSQCNSPSTRSFRKKGTLQME 487
Query: 501 CAGSTTNTTENTLRDNNN-----------------NLFISNKEHSISHWSALERDLYLKG 543
S + +++ D NN + I +E W +E+ L LKG
Sbjct: 488 NNSSFVDAQSDSMEDTNNEHSATDGCDSSRKEECVDESICRQEAHGRSWKVIEQGLLLKG 547
Query: 544 IEIFGKNSCLIARNLLSGLKTCMEVASYMYNNGAAMAKRPLSGKSILGDFAEAEQGYME- 602
+EIFGKNSCLIARNLL G+KTC +V YM + A LSG L +GYM+
Sbjct: 548 LEIFGKNSCLIARNLLGGMKTCTDVFQYMNYIENSSASGALSGVDSL------VKGYMKG 601
Query: 603 QDLVARTRICRRKGRARKLKYTWKSAGHPTVRKRIGDGK-QWYTQYNPCGCQQMCGKDCA 661
+L R+R RR+GR R+LKYTWK+AG+ +RKRI + K Q QY PCGCQ CGK C
Sbjct: 602 NELRTRSRFVRRRGRVRRLKYTWKTAGYHFIRKRITERKDQPCRQYTPCGCQSACGKQCP 661
Query: 662 CVENGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAASRECDPDVCRNCWVSCGD 721
C+ NGTCCEKYCGC K CKNRFRGCHCAKSQCRSRQCPCFAA RECDPDVCRNCWV CGD
Sbjct: 662 CLTNGTCCEKYCGCPKMCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVGCGD 721
Query: 722 GSLGEPLARGDGYQCGNMXXXXXXXXXXXXXXSDVAGWGAFIKNPVNRNDYLGEYTGELI 781
G+LG P RGD Y+C NM SDV+GWGAF+KN V +++YLGEYTGELI
Sbjct: 722 GTLGVPNQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELI 781
Query: 782 SHREADKRGKIYDRANSSFLFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDH 841
SH+EADKRGKIYDR NSSFLF+LN +YVLDAYR GDKLKFANHS +PNCYAKV++VAGDH
Sbjct: 782 SHKEADKRGKIYDRENSSFLFNLNNEYVLDAYRMGDKLKFANHSPDPNCYAKVIMVAGDH 841
Query: 842 RVGIYAKDRIEASEELFYDYRYGPDQAPAWARRPEG-SKKDEASVSHHRAHKVA 894
RVGI+AK+RI A EELFYDYRY PD+APAWAR+PEG KD+A S RA K+A
Sbjct: 842 RVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEGPGAKDDAQPSTGRAKKLA 895
>Os12g0613200 Similar to Histone-lysine N-methyltransferase, H3 lysine-4 specific
SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase
complex subunit SET1) (SET-domain-containing protein 1)
Length = 1212
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
Query: 754 SDVAGWGAFIKNPVNRNDYLGEYTGELISHREADKRGKIYDRAN--SSFLFDLNEQYVLD 811
S + WG ++ D++ EY GELI + +D R Y+++ SS+LF L++ YV+D
Sbjct: 1080 SKIHEWGLVALESIDAEDFVIEYVGELIRRQVSDIREDQYEKSGIGSSYLFRLDDDYVVD 1139
Query: 812 AYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIYAKDRIEASEELFYDYRY 863
A ++G +F NHS +PNCY KV+ V G ++ IYAK RI A EEL Y+Y++
Sbjct: 1140 ATKRGGLARFINHSCDPNCYTKVITVEGQKKIVIYAKRRIYAGEELTYNYKF 1191
>Os01g0218800 Similar to Trithorax 5 (Fragment)
Length = 991
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 754 SDVAGWGAFIKNPVNRNDYLGEYTGELISHREADKRGKIYDRANSS-FLFDLNEQYVLDA 812
S + GWG F + + EY G+ + AD R Y R +LF ++E V+DA
Sbjct: 856 SGIHGWGLFAAKKIQEGQMVIEYRGDQVRRSVADLREARYHREKKDCYLFKISEDVVVDA 915
Query: 813 YRKGDKLKFANHSSNPNCYAKVMLVAGDHR--VGIYAKDRIEASEELFYDYRYGPDQA 868
KG+ + NHS PNCYA++M V GD + + + AK + A EEL YDY + PD++
Sbjct: 916 TEKGNIARLINHSCMPNCYARIMSV-GDEKSQIILIAKRDVSAGEELTYDYLFDPDES 972
>Os02g0611300 Nuclear protein SET domain containing protein
Length = 263
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 67/110 (60%), Gaps = 6/110 (5%)
Query: 758 GWGAFIKNPVNRNDYLGEYTGELISHREADKRGKIYD---RANSSF-LFDLNEQYVLDAY 813
GWGA P+ + D++ EY GE+I+ ++R ++D R + +F + ++++ + +DA
Sbjct: 33 GWGAISLEPLEKGDFIIEYVGEVINDATCEQR--LWDMKRRGDKNFYMCEISKDFTIDAT 90
Query: 814 RKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIYAKDRIEASEELFYDYRY 863
KG+ +F NHS +PNC + V G+ RVG++A I+ E L YDYR+
Sbjct: 91 FKGNTSRFLNHSCDPNCKLEKWQVDGETRVGVFASRSIQVGEHLTYDYRF 140
>Os09g0134500 Similar to Trithorax-like protein 1
Length = 1022
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 754 SDVAGWGAFIKNPVNRNDYLGEYTGELISHREADKRGK-IYDR--ANSSFLFDLNEQYVL 810
S + G+G F K D + EY GEL+ +D R + IY+ +++F ++++ V+
Sbjct: 868 SRIHGFGVFAKVSHKAGDMMIEYIGELVRPPISDIRERRIYNSLVGAGTYMFRIDDERVI 927
Query: 811 DAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIYAKDRIEASEELFYDYRY 863
DA R G NHS PNCY++V+ V GD + I+AK I EEL YDYR+
Sbjct: 928 DATRAGSIAHLINHSCEPNCYSRVISVLGDEHIIIFAKRDINPWEELTYDYRF 980
>Os04g0429100 Similar to SET domain-containing protein SET102
Length = 612
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 733 GYQCGNMXXXXXXXXXXXXXXSDVAGWGAFIKNPVNRNDYLGEYTGELISHREADKRGKI 792
G C N ++ GWG + ++ EY GE+IS +EA +R +
Sbjct: 166 GVYCKNQRFQKSQYAATRLVKTEGRGWGLLADENIMAGQFVMEYCGEVISWKEAKRRSQA 225
Query: 793 YDR--ANSSFLFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIYAKDR 850
Y+ +++ LN +DA +KG +F NHS PNC + V G+ RVGI+AK
Sbjct: 226 YENQGLTDAYIIYLNADESIDATKKGSLARFINHSCQPNCETRKWNVLGEVRVGIFAKQD 285
Query: 851 IEASEELFYDYRY 863
I EL YDY +
Sbjct: 286 IPIGTELSYDYNF 298
>Os09g0556700 Nuclear protein SET domain containing protein
Length = 424
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 754 SDVAGWGAFIKNPVNRNDYLGEYTGELISHREADKR------GKIYDRANSSFLFDLNEQ 807
S + G G + + R + +Y GE++ ADKR GK ++ + F + ++
Sbjct: 286 SSIHGLGLYTSEFIPRGSMVVQYVGEIVGQCVADKREIEYQSGKRQQYKSACYFFKIGKE 345
Query: 808 YVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIYAKDRIEASEELFYDYRY 863
+++DA RKG +F NHS PNC AK++ V + +V +A+ I EE+ YDY +
Sbjct: 346 HIIDATRKGGIARFINHSCQPNCVAKIISVRNEKKVVFFAERHINPGEEITYDYHF 401
>Os08g0442500
Length = 523
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 758 GWGAFIKNPVNRNDYLGEYTGELISHREADKRGK-IYDRANSSFLF-DLNEQYVLDAYRK 815
GWG+ + ++D++ E+ GE+I ++R + + R + +F + + +V+DA K
Sbjct: 386 GWGSRALEAIEKDDFVIEFVGEVIDDETCEERLEDMRRRGDKNFYMCKVKKDFVIDATFK 445
Query: 816 GDKLKFANHSSNPNCYAKVMLVAGDHRVGIYAKDRIEASEELFYDYR----YGPD 866
G+ +F NHS PNC + V G R+G++A IE E L YDYR YGP+
Sbjct: 446 GNDCRFFNHSCEPNCQLQKWQVNGKTRLGVFASKAIEVGEPLTYDYRFEQHYGPE 500
>Os02g0554000 Zinc finger, CW-type domain containing protein
Length = 637
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 74/192 (38%), Gaps = 39/192 (20%)
Query: 674 GCSKSCKNRFRGCHCAKSQCRSRQCPCFAASRECDPDVCRNCWVSCGDGSLGEPLARGDG 733
GC C NR C K R CPC G
Sbjct: 159 GCRDGCLNRILNIECTK-----RTCPC--------------------------------G 181
Query: 734 YQCGNMXXXXXXXXXXXXXXSDVAGWGAFIKNPVNRNDYLGEYTGELISHREADKRGKIY 793
C N + G+G +K V+ +L EY GE++ + R + Y
Sbjct: 182 EHCSNQQFQRRTYAKLGKFHTGKKGYGLQLKEDVSEGRFLIEYVGEVLDITAYESRQRYY 241
Query: 794 -DRANSSFLF-DLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIYAKDRI 851
+ F F LN V+DA KG+ +F NHS +PNC + +V G+ +GI+A I
Sbjct: 242 ASKGQKHFYFMALNGGEVIDACTKGNLGRFINHSCSPNCRTEKWMVNGEVCIGIFAMRNI 301
Query: 852 EASEELFYDYRY 863
+ EEL +DY Y
Sbjct: 302 KKGEELTFDYNY 313
>Os09g0307800 Nuclear protein SET domain containing protein
Length = 340
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 735 QCGNMXXXXXXXXXXXXXXSDVAGWGAFIKNPVNRNDYLGEYTGELISHREADKR-GKIY 793
+C N ++ G G + + + +++ EY GE+I R ++R K+
Sbjct: 96 KCANKPFQHRTLRKTKLIKTEKCGNGVVAEEDIKKGEFVIEYVGEVIDDRTCEQRLWKMK 155
Query: 794 DRANSSF-LFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIYAKDRIE 852
+ +++F L +++ V+DA KG+ +F NHS PN + V G+ RVGI+A I+
Sbjct: 156 RQGDTNFYLCEVSSNMVIDATNKGNMSRFINHSCEPNTEMQKWTVEGETRVGIFALRDIK 215
Query: 853 ASEELFYDYR---YGPDQ 867
EEL YDY+ +G DQ
Sbjct: 216 TGEELTYDYKFVQFGADQ 233
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,806,986
Number of extensions: 1231461
Number of successful extensions: 3353
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 3332
Number of HSP's successfully gapped: 11
Length of query: 895
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 785
Effective length of database: 11,292,261
Effective search space: 8864424885
Effective search space used: 8864424885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)