Os01g0218800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Trithorax 5 (Fragment).
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Os01g0218800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Trithorax 5 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.82 | 0.198 | 11.1 | -0.2 | 0.437 | -0.281 | -0.285 | -1.2 | -0.0981 | 22.6 | 24 | 634 | -- | -- |
| 19.36 | 0.205 | 11.1 | -0.382 | 0.452 | -0.199 | -0.101 | -- | -0.134 | 22.9 | 36.76 | 412 | -- | -- |
| 18.06 | 0.198 | 11.1 | -0.203 | 0.439 | -0.272 | -- | -1.14 | -0.0959 | 22.6 | 24 | 504 | -- | -- |
| 19.39 | 0.205 | 11.1 | -0.381 | 0.444 | -0.203 | -- | -- | -0.134 | 22.9 | 41.41 | 428 | -- | -- |
| 27.88 | 0.246 | 11.1 | -0.266 | -- | -0.516 | -- | -1.02 | -0.159 | -- | 29.19 | 777 | -- | -- |
| 19.82 | 0.209 | 11.1 | -0.339 | 0.463 | -- | -0.0718 | -- | -0.105 | 22.5 | -- | -- | -- | -- |
| 19.85 | 0.209 | 11.1 | -0.336 | 0.464 | -- | -- | -- | -0.105 | 22.5 | -- | -- | -- | -- |
| 29.05 | 0.251 | 11.1 | -0.458 | -- | -0.503 | -- | -- | -0.18 | -- | 49.52 | 774 | -- | -- |
| 22.79 | 0.224 | 11.1 | -- | 0.453 | 0.0578 | -- | -- | -0.0603 | 22.3 | 41.41 | 428 | -- | -- |
| 33.04 | 0.269 | 11.1 | -0.328 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 22.82 | 0.223 | 11.1 | -- | 0.462 | -- | -- | -- | -0.0672 | 22.4 | -- | -- | -- | -- |
| 34.02 | 0.272 | 11.1 | -- | -- | -0.326 | -- | -- | -0.107 | -- | 61.33 | 748 | -- | -- |
| 35.88 | 0.28 | 11.1 | -- | -- | -- | -- | -- | -0.0664 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.98 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 5 | 17.11 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 11 | 17.19 | temperature | 25.0 | 720 | > th | dose independent | rect. | 4 | 7 |
| 21 | 17.23 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 2 |
| 22 | 17.23 | temperature | 25.0 | 720 | > th | dose independent | rect. | 23 | 12 |
| 23 | 17.24 | temperature | 25.0 | 270 | < th | dose independent | rect. | 5 | 7 |
| 25 | 17.24 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 30 | 17.26 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 56 | 17.34 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 62 | 17.37 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 107 | 17.49 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 13 |
| 139 | 17.55 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 15 |
| 151 | 17.58 | wind | 1.0 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 160 | 17.59 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 18 |
| 181 | 17.62 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 192 | 17.64 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 202 | 17.65 | temperature | 30.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 211 | 17.66 | temperature | 30.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 223 | 17.68 | temperature | 25.0 | 720 | > th | dose independent | sin | 6 | NA |
| 224 | 17.68 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 225 | 17.68 | wind | 1.0 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 235 | 17.69 | temperature | 10.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 258 | 17.72 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 15 | 7 |
| 276 | 17.74 | temperature | 25.0 | 270 | < th | dose independent | sin | 3 | NA |
| 283 | 17.74 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 14 |
| 295 | 17.74 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 20 |
| 311 | 17.76 | temperature | 25.0 | 720 | < th | dose independent | rect. | 22 | 13 |
| 315 | 17.76 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 20 |
| 321 | 17.76 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 16 | 7 |
| 368 | 17.78 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 384 | 17.79 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 12 |
| 389 | 17.79 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 394 | 17.80 | temperature | 25.0 | 270 | > th | dose independent | sin | 3 | NA |
| 401 | 17.80 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 403 | 17.80 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 420 | 17.81 | wind | 5.0 | 720 | < th | dose independent | rect. | 23 | 12 |
| 423 | 17.81 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 437 | 17.81 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 442 | 17.82 | wind | 1.0 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 445 | 17.82 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 14 |
| 450 | 17.82 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 461 | 17.82 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 499 | 17.84 | temperature | 25.0 | 720 | < th | dose independent | sin | 7 | NA |
| 506 | 17.84 | temperature | 15.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 513 | 17.84 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 518 | 17.84 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 13 | 11 |
| 542 | 17.85 | temperature | 20.0 | 14400 | < th | dose dependent | sin | 18 | NA |
| 603 | 17.86 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 17 | 20 |
| 649 | 17.88 | temperature | 25.0 | 720 | < th | dose independent | rect. | 1 | 9 |
| 679 | 17.89 | radiation | 20.0 | 30 | < th | dose independent | rect. | 12 | 8 |
| 683 | 17.89 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 747 | 17.91 | temperature | 20.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 750 | 17.91 | temperature | 20.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 760 | 17.91 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 778 | 17.91 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 10 | 10 |
| 793 | 17.91 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 806 | 17.92 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 847 | 17.92 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 850 | 17.92 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 852 | 17.93 | wind | 3.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 853 | 17.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 854 | 17.93 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 857 | 17.93 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 858 | 17.93 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 859 | 17.93 | wind | 5.0 | 720 | < th | dose independent | rect. | 24 | 10 |
| 860 | 17.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 868 | 17.93 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 13 | 7 |
| 899 | 17.94 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 16 |
| 904 | 17.94 | radiation | 40.0 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 908 | 17.94 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 925 | 17.95 | wind | 3.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 940 | 17.95 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 5 | 17 |
| 952 | 17.95 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 4 |