FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0556700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nuclear protein SET domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.49 (0.0524) R2 : 0.533
β1 : -2.4 (0.199) R2dD : 0.184 R2D : 0.111
β2 : 6.36 (0.474) R2dC : 2.47 R2C : -3.29
β3 : 9.95 (0.618) R2dE : 3.54 R2E : -2.23
β4 : 12.5 (1.83) R2dD*C : 0.45 R2D*C : -0.404
β5 : 15.5 (2.44) R2dD*E : 0.398 R2D*E : -0.32
γ1 : -1.08 (0.111) R2dN8 : 0.141 R2N8 : 0.0124
σ : 0.938
deviance : 398.74
__
_____
C
peak time of C : 5.71
E
wheather : radiation
threshold : 1.083
memory length : 781
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
398.74 0.938 5.49 -2.4 6.36 9.95 12.5 15.5 -1.08 5.71 1.083 781 -- --
503.37 1.04 5.56 -2.95 9.39 13.4 4.43 -- -1.33 5.52 1.042 744 -- --
457.08 0.996 5.39 -2.52 7.46 11.8 -- 1.03 -1.12 6.01 1.38 808 -- --
440.59 0.978 5.55 -2.69 7.6 12 -- -- -1.33 6.08 1.58 804 -- --
646.24 1.19 5.64 -2.24 -- -0.465 -- -1.37 -0.929 -- 1.38 808 -- --
589.05 1.14 5.67 -2.19 1.27 -- 1.28 -- -0.926 20.6 -- -- -- --
593.63 1.14 5.67 -2.23 1.28 -- -- -- -0.924 20.2 -- -- -- --
459.08 0.998 5.75 -2.66 -- 2.64 -- -- -1.37 -- 10.54 1081 -- --
641.96 1.18 5.42 -- 5.86 10.2 -- -- -1.08 6.29 1.64 835 -- --
684.02 1.22 5.64 -2.24 -- -- -- -- -0.938 -- -- -- -- --
724.53 1.26 5.62 -- 1.29 -- -- -- -0.675 20.1 -- -- -- --
612.17 1.15 5.66 -- -- 2.72 -- -- -0.906 -- 8.22 1074 -- --
816.11 1.33 5.58 -- -- -- -- -- -0.69 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 393.70 radiation 1 4320 > th dose independent rect. 18 11
2 394.55 radiation 1 720 > th dose independent rect. 7 23
3 397.80 wind 5 43200 < th dose independent rect. 11 1
4 397.98 radiation 10 14400 > th dose independent rect. 17 1
16 398.45 temperature 25 4320 < th dose independent rect. 7 2
20 400.19 temperature 25 4320 > th dose independent rect. 7 2
22 400.52 wind 5 43200 > th dose independent rect. 11 1
25 400.99 temperature 20 14400 < th dose independent rect. 24 1
26 401.31 radiation 1 1440 < th dose independent rect. 11 19
28 401.60 radiation 1 1440 < th dose dependent rect. 8 22
47 402.62 radiation 1 1440 > th dose independent rect. 11 19
51 403.05 temperature 20 14400 > th dose independent rect. 24 1
87 405.17 radiation 1 720 < th dose independent rect. 5 21
91 405.45 wind 5 43200 > th dose dependent rect. 11 3
95 405.78 temperature 25 14400 < th dose independent rect. 20 1
99 406.06 temperature 25 14400 > th dose independent rect. 18 6
103 406.42 temperature 25 14400 < th dose independent rect. 18 6
109 406.64 temperature 20 14400 > th dose independent rect. 4 1
113 406.75 temperature 25 14400 > th dose independent rect. 19 2
123 406.97 radiation 1 720 > th dose independent rect. 15 23
125 407.02 radiation 1 14400 < th dose independent rect. 18 11
133 407.41 radiation 1 720 < th dose independent rect. 3 23
136 407.50 radiation 1 720 < th dose dependent rect. 5 21
142 407.73 temperature 20 14400 < th dose independent rect. 4 1
159 408.41 temperature 25 14400 > th dose dependent rect. 17 2
181 409.00 humidity 90 43200 < th dose independent rect. 10 1
182 409.00 wind 5 43200 > th dose independent rect. 9 5
183 409.03 wind 9 43200 > th dose dependent rect. 19 11
191 409.26 temperature 25 720 > th dose dependent rect. 13 21
207 409.61 temperature 20 14400 > th dose independent rect. 23 6
219 409.93 temperature 25 14400 < th dose independent rect. 18 15
227 410.06 wind 1 43200 > th dose independent rect. 3 1
244 410.50 temperature 25 14400 > th dose independent rect. 18 14
251 410.61 temperature 25 4320 > th dose dependent rect. 9 1
254 410.65 wind 5 43200 < th dose independent rect. 9 5
268 410.93 temperature 25 1440 > th dose dependent rect. 7 12
280 411.17 temperature 25 1440 > th dose dependent rect. 7 8
286 411.20 temperature 25 1440 > th dose dependent sin 3 NA
297 411.31 radiation 1 720 < th dose independent rect. 5 18
361 411.86 radiation 1 720 < th dose dependent rect. 3 23
381 412.02 wind 5 43200 < th dose independent rect. 20 1
488 412.73 radiation 40 14400 < th dose dependent rect. 16 1
502 412.84 temperature 25 1440 > th dose dependent rect. 16 23
503 412.85 temperature 25 720 > th dose dependent rect. 15 19
511 412.91 wind 5 43200 > th dose independent rect. 20 1
557 413.25 temperature 20 14400 > th dose dependent rect. 21 1
565 413.30 radiation 1 14400 < th dose independent rect. 18 6
571 413.31 temperature 25 14400 > th dose dependent rect. 17 12
572 413.32 temperature 25 1440 > th dose dependent no NA NA
582 413.40 radiation 1 14400 < th dose independent rect. 18 1
585 413.41 wind 5 43200 > th dose independent rect. 5 10
612 413.56 temperature 25 14400 > th dose dependent rect. 17 17
654 413.88 wind 5 43200 < th dose independent rect. 5 10
668 413.98 radiation 1 14400 > th dose dependent rect. 16 1
703 414.32 temperature 25 14400 < th dose independent sin 11 NA
708 414.36 temperature 30 14400 < th dose independent rect. 13 2
709 414.40 temperature 30 14400 < th dose independent rect. 12 4
718 414.49 temperature 30 14400 > th dose independent rect. 13 2
738 414.60 temperature 30 14400 > th dose independent rect. 12 4
755 414.74 humidity 90 43200 < th dose independent rect. 20 9
790 414.92 temperature 25 14400 > th dose independent sin 11 NA
797 414.95 temperature 25 14400 > th dose dependent sin 14 NA
814 415.11 radiation 1 720 > th dose independent sin 23 NA
816 415.11 temperature 30 14400 < th dose independent rect. 13 19
820 415.13 temperature 30 14400 < th dose independent rect. 13 10
830 415.15 temperature 30 14400 < th dose independent rect. 13 14
831 415.15 temperature 30 14400 < th dose independent rect. 13 16
901 415.52 radiation 40 1440 < th dose dependent rect. 16 1
905 415.54 radiation 1 1440 < th dose independent sin 13 NA
908 415.55 radiation 1 1440 < th dose dependent rect. 5 14
926 415.62 radiation 30 1440 < th dose dependent rect. 16 14
931 415.65 radiation 40 1440 < th dose dependent rect. 15 16
956 415.71 temperature 30 14400 < th dose independent rect. 18 23
977 415.80 temperature 25 1440 > th dose dependent rect. 16 3
983 415.83 humidity 80 14400 > th dose independent rect. 17 3