Os09g0134500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Trithorax-like protein 1.
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Os09g0134500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Trithorax-like protein 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.26 | 0.206 | 8.17 | -0.022 | 0.162 | -0.241 | -0.15 | -1.08 | -0.0874 | 6.62 | 22.3 | 1351 | -- | -- |
| 21.29 | 0.215 | 8.22 | -0.418 | 0.162 | -0.293 | -0.127 | -- | -0.225 | 6.69 | 24.33 | 1337 | -- | -- |
| 19.3 | 0.205 | 8.17 | -0.0234 | 0.163 | -0.238 | -- | -1.07 | -0.0866 | 6.48 | 22.3 | 1325 | -- | -- |
| 21.28 | 0.215 | 8.22 | -0.396 | 0.165 | -0.284 | -- | -- | -0.213 | 7.05 | 24.3 | 1240 | -- | -- |
| 20.68 | 0.212 | 8.17 | -0.0261 | -- | -0.249 | -- | -1.09 | -0.0843 | -- | 22.27 | 1325 | -- | -- |
| 24.16 | 0.23 | 8.19 | -0.294 | 0.174 | -- | -0.0928 | -- | -0.0938 | 6.28 | -- | -- | -- | -- |
| 24.17 | 0.23 | 8.19 | -0.295 | 0.174 | -- | -- | -- | -0.0936 | 6.1 | -- | -- | -- | -- |
| 22.48 | 0.221 | 8.22 | -0.401 | -- | -0.289 | -- | -- | -0.207 | -- | 24.3 | 1272 | -- | -- |
| 25.07 | 0.233 | 8.2 | -- | 0.156 | -0.184 | -- | -- | -0.13 | 6.8 | 24.4 | 1232 | -- | -- |
| 25.74 | 0.237 | 8.19 | -0.29 | -- | -- | -- | -- | -0.0897 | -- | -- | -- | -- | -- |
| 26.47 | 0.241 | 8.18 | -- | 0.17 | -- | -- | -- | -0.0607 | 6.19 | -- | -- | -- | -- |
| 26.25 | 0.239 | 8.2 | -- | -- | -0.214 | -- | -- | -0.127 | -- | 24.7 | 1278 | -- | -- |
| 27.96 | 0.247 | 8.18 | -- | -- | -- | -- | -- | -0.0575 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.60 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 2 | 19.62 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 3 | 19.62 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 4 | 19.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 20 | 19.71 | temperature | 15 | 270 | > th | dose dependent | sin | 16 | NA |
| 30 | 19.73 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 49 | 19.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 50 | 19.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 70 | 19.78 | temperature | 15 | 10 | > th | dose dependent | sin | 14 | NA |
| 80 | 19.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 81 | 19.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 92 | 19.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 109 | 19.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 10 |
| 113 | 19.81 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 133 | 19.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 134 | 19.82 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 153 | 19.83 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 177 | 19.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 191 | 19.85 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 212 | 19.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 252 | 19.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 253 | 19.87 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 325 | 19.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 357 | 19.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 362 | 19.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 410 | 19.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 420 | 19.92 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 592 | 19.97 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 678 | 19.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 683 | 19.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 747 | 19.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 752 | 19.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 753 | 20.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 792 | 20.01 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 878 | 20.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 897 | 20.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |