Os04g0429100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SET domain-containing protein SET102.
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Os04g0429100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SET domain-containing protein SET102.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.79 | 0.261 | 9.11 | -0.244 | 0.0562 | 0.506 | -0.626 | 0.441 | -0.122 | 6.29 | 21.4 | 1499 | -- | -- |
| 30.99 | 0.259 | 9.12 | -0.372 | 0.0722 | 0.466 | -0.595 | -- | -0.152 | 5.98 | 21.51 | 2091 | -- | -- |
| 31.71 | 0.262 | 9.11 | -0.255 | 0.056 | 0.51 | -- | 0.406 | -0.127 | 7.75 | 21.48 | 1370 | -- | -- |
| 31.72 | 0.262 | 9.12 | -0.399 | 0.0837 | 0.489 | -- | -- | -0.157 | 8.48 | 21.6 | 2153 | -- | -- |
| 31.88 | 0.263 | 9.11 | -0.251 | -- | 0.508 | -- | 0.435 | -0.12 | -- | 21.46 | 1377 | -- | -- |
| 37.73 | 0.288 | 9.09 | -0.162 | 0.0626 | -- | -0.651 | -- | -0.0118 | 6.12 | -- | -- | -- | -- |
| 38.76 | 0.292 | 9.09 | -0.168 | 0.0604 | -- | -- | -- | -0.00924 | 6.84 | -- | -- | -- | -- |
| 32.12 | 0.264 | 9.12 | -0.394 | -- | 0.482 | -- | -- | -0.156 | -- | 21.54 | 2151 | -- | -- |
| 34.81 | 0.275 | 9.11 | -- | 0.0741 | 0.33 | -- | -- | -0.102 | 7.9 | 22.3 | 2116 | -- | -- |
| 38.95 | 0.292 | 9.09 | -0.167 | -- | -- | -- | -- | -0.00808 | -- | -- | -- | -- | -- |
| 39.51 | 0.294 | 9.09 | -- | 0.0585 | -- | -- | -- | 0.00952 | 7.02 | -- | -- | -- | -- |
| 35.11 | 0.276 | 9.11 | -- | -- | 0.331 | -- | -- | -0.0937 | -- | 22.39 | 2108 | -- | -- |
| 39.69 | 0.294 | 9.09 | -- | -- | -- | -- | -- | 0.0105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.45 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 2 | 30.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 6 | 30.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 7 | 30.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 21 | 30.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 42 | 31.06 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 48 | 31.10 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 52 | 31.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 57 | 31.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 64 | 31.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 80 | 31.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 82 | 31.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 85 | 31.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 94 | 31.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 96 | 31.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 100 | 31.25 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 123 | 31.29 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 177 | 31.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 239 | 31.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 246 | 31.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 298 | 31.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 301 | 31.47 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 494 | 31.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 499 | 31.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 510 | 31.62 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 587 | 31.65 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 810 | 31.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 812 | 31.77 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 861 | 31.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 880 | 31.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 897 | 31.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 927 | 31.83 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |