BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0270000 Os03g0270000|AK106069
(258 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0270000 Protein of unknown function DUF296 domain cont... 350 6e-97
Os08g0563200 Protein of unknown function DUF296 domain cont... 156 1e-38
Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing... 145 3e-35
Os02g0448000 Protein of unknown function DUF296 domain cont... 135 3e-32
Os06g0136900 Protein of unknown function DUF296 domain cont... 134 6e-32
Os06g0326900 Protein of unknown function DUF296 domain cont... 133 1e-31
Os02g0713700 Protein of unknown function DUF296 domain cont... 133 1e-31
Os04g0590200 Protein of unknown function DUF296 domain cont... 128 4e-30
Os08g0159700 Protein of unknown function DUF296 domain cont... 114 1e-25
Os06g0623800 103 2e-22
Os07g0235200 Protein of unknown function DUF296 domain cont... 101 5e-22
Os09g0464300 85 5e-17
Os09g0365400 85 6e-17
Os01g0953801 Protein of unknown function DUF296 domain cont... 78 7e-15
Os08g0478466 Protein of unknown function DUF296 domain cont... 68 6e-12
Os10g0572900 Protein of unknown function DUF296 domain cont... 68 7e-12
>Os03g0270000 Protein of unknown function DUF296 domain containing protein
Length = 258
Score = 350 bits (898), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 189/258 (73%), Positives = 189/258 (73%)
Query: 1 MGSIDGHSLQQHQGYSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MGSIDGHSLQQHQGYSH
Sbjct: 1 MGSIDGHSLQQHQGYSHGGGAGGSNEEEEASPPPGGGSATGSAGRRPRGRPPGSKNKPKP 60
Query: 61 XVVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGT 120
VVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGT
Sbjct: 61 PVVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGT 120
Query: 121 GAAAVALRGRFEILSMSXXXXXXXXXXXXXXXXVYLAXXXXXXXXXSVMGELIASGPVMV 180
GAAAVALRGRFEILSMS VYLA SVMGELIASGPVMV
Sbjct: 121 GAAAVALRGRFEILSMSGAFLPAPAPPGATGLAVYLAGGQGQVVGGSVMGELIASGPVMV 180
Query: 181 IAATFGNATYERLPLDQEGEEGAVLSGSEGAAAQMEQQSSGGAVVPPPMYAAVQQTPPHD 240
IAATFGNATYERLPLDQEGEEGAVLSGSEGAAAQMEQQSSGGAVVPPPMYAAVQQTPPHD
Sbjct: 181 IAATFGNATYERLPLDQEGEEGAVLSGSEGAAAQMEQQSSGGAVVPPPMYAAVQQTPPHD 240
Query: 241 MFGQWGHAAVARPPPTSF 258
MFGQWGHAAVARPPPTSF
Sbjct: 241 MFGQWGHAAVARPPPTSF 258
>Os08g0563200 Protein of unknown function DUF296 domain containing protein
Length = 235
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 110/170 (64%), Gaps = 17/170 (10%)
Query: 62 VVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTG 121
+ VTR+SPNA+RSHV+E+A GAD+ E+IA F+RRRQRGV VLSG+G VT+V LRQPA
Sbjct: 52 IFVTRDSPNALRSHVMEVAGGADVAESIAHFARRRQRGVCVLSGAGTVTDVALRQPAAP- 110
Query: 122 AAAVALRGRFEILSMSXXXXXXXXXXXXXXXXVYLAXXXXXXXXXSVMGELIASGPVMVI 181
+A VALRGRFEILS++ VYLA SV+G L A+GPVMVI
Sbjct: 111 SAVVALRGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGSVVGTLTAAGPVMVI 170
Query: 182 AATFGNATYERLPLDQEGEEGAVLSGSEGAAAQMEQQSSGGAVVPPPMYA 231
A+TF NATYERLPLDQE EE A +GG + PPP+ A
Sbjct: 171 ASTFANATYERLPLDQEEEEAA----------------AGGMMAPPPLMA 204
>Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 266
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 94/134 (70%), Gaps = 1/134 (0%)
Query: 62 VVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTG 121
+ VTR+SPNA+RSHV+E+A GAD+ +AIA FSRRRQRGV VLSG+G V NV LRQP+ G
Sbjct: 75 IFVTRDSPNALRSHVMEVAGGADVADAIAQFSRRRQRGVCVLSGAGTVANVALRQPSAPG 134
Query: 122 AAAVALRGRFEILSMSXXXXXXXXXXXXXXXXVYLAXXXXXXXXXSVMGELIASGPVMVI 181
A VAL GRFEILS++ VYLA SV+G LIA+GPVMVI
Sbjct: 135 -AVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGSVVGSLIAAGPVMVI 193
Query: 182 AATFGNATYERLPL 195
A+TF NATYERLPL
Sbjct: 194 ASTFANATYERLPL 207
>Os02g0448000 Protein of unknown function DUF296 domain containing protein
Length = 316
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 93/137 (67%), Gaps = 1/137 (0%)
Query: 62 VVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTG 121
+++TR+S N +R+HV+E+A G DI E+I F+RRRQRGV VLSG+G VTNVTLRQPA G
Sbjct: 114 IIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVTLRQPASQG 173
Query: 122 AAAVALRGRFEILSMSXXXXXXXXXXXXXXXXVYLAXXXXXXXXXSVMGELIASGPVMVI 181
A VAL GRFEILS+S VYLA SV+G L A+GPV+++
Sbjct: 174 -AVVALHGRFEILSLSGSFLPPPAPPEATGLTVYLAGGQGQVVGGSVVGALTAAGPVVIM 232
Query: 182 AATFGNATYERLPLDQE 198
AA+F NA YERLPL+ +
Sbjct: 233 AASFANAVYERLPLEDD 249
>Os06g0136900 Protein of unknown function DUF296 domain containing protein
Length = 328
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 93/137 (67%)
Query: 62 VVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTG 121
V++TR+S +A+R+HVLE+ASG D+V+++A F+RRRQ GV VLS +GAVTNV++RQP
Sbjct: 128 VIITRDSASALRAHVLEVASGCDLVDSVATFARRRQVGVCVLSATGAVTNVSVRQPGAGP 187
Query: 122 AAAVALRGRFEILSMSXXXXXXXXXXXXXXXXVYLAXXXXXXXXXSVMGELIASGPVMVI 181
A V L GRF+ILS+S VY++ +V G LIA GPV+++
Sbjct: 188 GAVVNLTGRFDILSLSGSFLPPPAPPSATGLTVYVSGGQGQVVGGTVAGPLIAVGPVVIM 247
Query: 182 AATFGNATYERLPLDQE 198
AA+FGNA YERLPL+ +
Sbjct: 248 AASFGNAAYERLPLEDD 264
>Os06g0326900 Protein of unknown function DUF296 domain containing protein
Length = 322
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 91/139 (65%), Gaps = 2/139 (1%)
Query: 62 VVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGT- 120
++VTR+SPNA SHVLE+A+G DIVE + F+RRR RGVSVLSG GAV NV LRQP +
Sbjct: 100 IIVTRDSPNAFHSHVLEVAAGTDIVECVCEFARRRGRGVSVLSGGGAVANVALRQPGASP 159
Query: 121 -GAAAVALRGRFEILSMSXXXXXXXXXXXXXXXXVYLAXXXXXXXXXSVMGELIASGPVM 179
G+ +RG+FEILS++ V+L+ SV G+LIA+GPV
Sbjct: 160 PGSLVATMRGQFEILSLTGTVLPPPAPPSASGLTVFLSGGQGQVVGGSVAGQLIAAGPVF 219
Query: 180 VIAATFGNATYERLPLDQE 198
++AA+F NA YERLPLD E
Sbjct: 220 LMAASFANAVYERLPLDGE 238
>Os02g0713700 Protein of unknown function DUF296 domain containing protein
Length = 336
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 91/136 (66%), Gaps = 2/136 (1%)
Query: 62 VVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGT- 120
++VTR+SPNA+ SHVLE+A GAD+V+ +A ++RRR RGV VLSG GAV NV LRQP +
Sbjct: 116 IIVTRDSPNALHSHVLEVAGGADVVDCVAEYARRRGRGVCVLSGGGAVVNVALRQPGASP 175
Query: 121 -GAAAVALRGRFEILSMSXXXXXXXXXXXXXXXXVYLAXXXXXXXXXSVMGELIASGPVM 179
G+ LRGRFEILS++ V+L+ SV+G L+A+GPV+
Sbjct: 176 PGSMVATLRGRFEILSLTGTVLPPPAPPGASGLTVFLSGGQGQVIGGSVVGPLVAAGPVV 235
Query: 180 VIAATFGNATYERLPL 195
++AA+F NA YERLPL
Sbjct: 236 LMAASFANAVYERLPL 251
>Os04g0590200 Protein of unknown function DUF296 domain containing protein
Length = 305
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 86/131 (65%)
Query: 62 VVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTG 121
V++TRES N +R+H+LE+ SG D+ E ++ ++RRRQRGV VLSGSG VTNVTLRQP+
Sbjct: 99 VIITRESANTLRAHILEVGSGCDVFECVSTYARRRQRGVCVLSGSGVVTNVTLRQPSAPA 158
Query: 122 AAAVALRGRFEILSMSXXXXXXXXXXXXXXXXVYLAXXXXXXXXXSVMGELIASGPVMVI 181
A V+L GRFEILS+S ++LA +V+G L A+GPV+VI
Sbjct: 159 GAVVSLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALYAAGPVIVI 218
Query: 182 AATFGNATYER 192
AA+F N YER
Sbjct: 219 AASFANVAYER 229
>Os08g0159700 Protein of unknown function DUF296 domain containing protein
Length = 289
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 94/145 (64%), Gaps = 6/145 (4%)
Query: 62 VVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQP---- 117
V++TRES NA+R+H+LE+A+G D+ EA+ ++RRRQRGV VLS +G V NVTLRQP
Sbjct: 80 VIITRESANALRAHILEVAAGCDVFEALTAYARRRQRGVCVLSAAGTVANVTLRQPQSAQ 139
Query: 118 AGTGAAAVA-LRGRFEILSMSXXXXXXXXXXXXXXXXVYLAXXXXXXXXXSVMGELIASG 176
G + AVA L GRFEILS++ +LA SV G LIA+G
Sbjct: 140 PGPASPAVATLHGRFEILSLAGSFLPPPAPPGATSLAAFLAGGQGQVVGGSVAGALIAAG 199
Query: 177 PVMVIAATFGNATYERLPLDQEGEE 201
PV+V+AA+F N YERLPL ++G+E
Sbjct: 200 PVVVVAASFSNVAYERLPL-EDGDE 223
>Os06g0623800
Length = 258
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 80/134 (59%), Gaps = 6/134 (4%)
Query: 62 VVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTG 121
V++TR+SP+A+ SH++E+A GAD+ +A ++RRR RGV ++ SGAV +V +R
Sbjct: 67 VIITRDSPDALHSHIIEVAPGADVAACVAEYARRRGRGVCLMGASGAVADVAVR------ 120
Query: 122 AAAVALRGRFEILSMSXXXXXXXXXXXXXXXXVYLAXXXXXXXXXSVMGELIASGPVMVI 181
AA L GRFE+LS++ V L+ V+G L+A+GPV +
Sbjct: 121 GAAAPLPGRFELLSVTGTVLPPPAPPGASGLSVLLSAGQGQVVGGCVVGPLVAAGPVTLF 180
Query: 182 AATFGNATYERLPL 195
AATF NA YERLPL
Sbjct: 181 AATFANAVYERLPL 194
>Os07g0235200 Protein of unknown function DUF296 domain containing protein
Length = 189
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 73/112 (65%), Gaps = 6/112 (5%)
Query: 86 VEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTGAAAVALRGRFEILSMSXXXXXXXX 145
+ +IA F+RR++RG+ VLS + AVT+V LRQPA GA VALRGRFEILS++
Sbjct: 30 LTSIAHFARRQRRGICVLSRADAVTDVALRQPAAPGAV-VALRGRFEILSLTGTFLPGPG 88
Query: 146 XXXXXXXXVYLAXXXXXXXXXSVMGELIASGPVMVIAATFGNATYERLPLDQ 197
VYLA V+G L A+GPVMVIA+TF NATYERLPLDQ
Sbjct: 89 PPGSTRLTVYLAGGQG-----QVVGTLTAAGPVMVIASTFANATYERLPLDQ 135
>Os09g0464300
Length = 334
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 81/150 (54%), Gaps = 13/150 (8%)
Query: 62 VVVTRESPNA--MRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPA- 118
VV+TRE+ A MR HV+EI G D+ EA+A FS RR G+ VL+G+GAV NV+LR P+
Sbjct: 99 VVITREAEPAAAMRPHVIEIPGGRDVAEALARFSSRRNLGICVLAGTGAVANVSLRHPSP 158
Query: 119 ---GTGAAAVALRGRFEILSMSXXXXXXXXXXXXXXX-------XVYLAXXXXXXXXXSV 168
G+ AA+ GR+EILS+S + LA +V
Sbjct: 159 GVPGSAPAAIVFHGRYEILSLSATFLPPAMSSVAPQAAVAAAGLSISLAGPHGQIVGGAV 218
Query: 169 MGELIASGPVMVIAATFGNATYERLPLDQE 198
G L A+ V+V+AA F N T+ RLP D +
Sbjct: 219 AGPLYAATTVVVVAAAFTNPTFHRLPADDD 248
>Os09g0365400
Length = 1271
Score = 84.7 bits (208), Expect = 6e-17, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 14/160 (8%)
Query: 62 VVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTG 121
V+V RES N MRSH++EIA G D+ EA+A F+RRRQ V+ +LRQP G
Sbjct: 117 VIVARESTNTMRSHMMEIADGEDVAEAVADFARRRQSWVA-----------SLRQP-GEP 164
Query: 122 AAAVALRGRFEILSMSXXXXXXXXXXXXXXXXVYLAXXXXXXXXXSVMGELIASGPVMVI 181
+ + L G EILS+S LA +V+G L A G V ++
Sbjct: 165 GSVIELSGPLEILSLSGAFMPPPSLANATGLKALLAGGQGQVIGGNVVGALRARGHVTIL 224
Query: 182 AATFGNATYERLPLDQE--GEEGAVLSGSEGAAAQMEQQS 219
AA N TYE L + + + G V + + ++ME S
Sbjct: 225 AAVVSNVTYECLSPEHDVVDDPGKVPAAVTESHSRMEPLS 264
>Os01g0953801 Protein of unknown function DUF296 domain containing protein
Length = 265
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 62 VVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTG 121
VVVTRES AMR VLE+ +G ++ A+A F+RRR+ GVSVL G G V VTLR P +
Sbjct: 44 VVVTRESEAAMRPVVLELGAGCEVAAAVAAFARRRRVGVSVLCGRGTVAAVTLRLPT-SP 102
Query: 122 AAAVALRGRFEILSMSXXXXXXXX---XXXXXXXXVYLAXXXXXXXXXSVMGELIASGPV 178
AAV L GRFE+LS+S V LA ++ GE+ + +
Sbjct: 103 PAAVKLHGRFEVLSLSGTVLPSAAGEGAAPPPPFSVSLAGAGGQVIGGTLAGEMTTADGL 162
Query: 179 MVIAATFGNATYERLPLDQEGEEGAVLSGSE 209
+V+AATFG+A RLP D++ E G E
Sbjct: 163 VVVAATFGSAEVHRLPADEDDEATGSRGGEE 193
>Os08g0478466 Protein of unknown function DUF296 domain containing protein
Length = 324
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 57/93 (61%), Gaps = 17/93 (18%)
Query: 62 VVVTRESPNA-------MRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTL 114
VVVTRE+ A MRSHVLEI G D+ A+AG++RRR G+ VL+G+GAV NV+L
Sbjct: 84 VVVTREAAAAEPAAAAAMRSHVLEIPGGGDVAGALAGYARRRGLGICVLAGTGAVANVSL 143
Query: 115 RQP----------AGTGAAAVALRGRFEILSMS 137
R P G AA V GR+EILS+S
Sbjct: 144 RHPLPSGAAAEIGGGAAAAVVVFHGRYEILSIS 176
>Os10g0572900 Protein of unknown function DUF296 domain containing protein
Length = 251
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 71 AMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTGAAAVALRGR 130
A H+L + +G D+ I FS++ R V +LS +GA++NVTLRQPA +G V GR
Sbjct: 33 AFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANGAISNVTLRQPATSG-GLVTYEGR 91
Query: 131 FEILSMSXXXXXXXXXXXXXXX---XVYLAXXXXXXXXXSVMGELIASGPVMVIAATF 185
FEI+S+S V LA V G L+A+ PV V+ A+F
Sbjct: 92 FEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLGGCVAGMLMAATPVQVVVASF 149
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,491,566
Number of extensions: 292407
Number of successful extensions: 1438
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 1412
Number of HSP's successfully gapped: 18
Length of query: 258
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 159
Effective length of database: 11,866,615
Effective search space: 1886791785
Effective search space used: 1886791785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)