BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0184300 Os03g0184300|AK120569
(500 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0184300 Glycosyl transferase, family 8 protein 964 0.0
Os01g0880200 Glycosyl transferase, family 8 protein 487 e-138
Os02g0556000 Glycosyl transferase, family 8 protein 404 e-113
Os05g0426400 Conserved hypothetical protein 123 3e-28
Os02g0624400 Glycosyl transferase, family 8 protein 107 2e-23
Os03g0316200 Similar to Galactinol synthase (Fragment) 82 1e-15
Os04g0553800 Glycosyl transferase, family 8 protein 76 7e-14
>Os03g0184300 Glycosyl transferase, family 8 protein
Length = 500
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/500 (95%), Positives = 479/500 (95%)
Query: 1 MFDELRGRLRMGLVNIGRDELLALGVEGDAVGVDFERVSDMFRWSDLFPEWIDEEEDDEG 60
MFDELRGRLRMGLVNIGRDELLALGVEGDAVGVDFERVSDMFRWSDLFPEWIDEEEDDEG
Sbjct: 1 MFDELRGRLRMGLVNIGRDELLALGVEGDAVGVDFERVSDMFRWSDLFPEWIDEEEDDEG 60
Query: 61 PSCPELPMPDFSRYGDVDVVVASLPCNRSDAAWNRDVFRLQVHLVTAHMAARKGLRHDAX 120
PSCPELPMPDFSRYGDVDVVVASLPCNRSDAAWNRDVFRLQVHLVTAHMAARKGLRHDA
Sbjct: 61 PSCPELPMPDFSRYGDVDVVVASLPCNRSDAAWNRDVFRLQVHLVTAHMAARKGLRHDAG 120
Query: 121 XXXXXXXXXXXXXSECEPMMDLFRCDEAVGRDGEWWMYMVDVERLEEKLRLPVGSCNLAL 180
SECEPMMDLFRCDEAVGRDGEWWMYMVDVERLEEKLRLPVGSCNLAL
Sbjct: 121 GGGGGGRVRVVVRSECEPMMDLFRCDEAVGRDGEWWMYMVDVERLEEKLRLPVGSCNLAL 180
Query: 181 PLWGPGGIQEVFNVSELXXXXXXXGRPRREAYATVLHSSDTYLCGAIVLAQSIRRAGSTR 240
PLWGPGGIQEVFNVSEL GRPRREAYATVLHSSDTYLCGAIVLAQSIRRAGSTR
Sbjct: 181 PLWGPGGIQEVFNVSELTAAAATAGRPRREAYATVLHSSDTYLCGAIVLAQSIRRAGSTR 240
Query: 241 DLVLLHDHTVSKPALAALVAAGWTPRKIKRIRNPRAERGTYNEYNYSKFRLWQLTDYDRV 300
DLVLLHDHTVSKPALAALVAAGWTPRKIKRIRNPRAERGTYNEYNYSKFRLWQLTDYDRV
Sbjct: 241 DLVLLHDHTVSKPALAALVAAGWTPRKIKRIRNPRAERGTYNEYNYSKFRLWQLTDYDRV 300
Query: 301 VFVDADILVLRDLDALFGFPQLTAVGNDGSLFNSGVMVIEPSQCTFQSLIRQRRTIRSYN 360
VFVDADILVLRDLDALFGFPQLTAVGNDGSLFNSGVMVIEPSQCTFQSLIRQRRTIRSYN
Sbjct: 301 VFVDADILVLRDLDALFGFPQLTAVGNDGSLFNSGVMVIEPSQCTFQSLIRQRRTIRSYN 360
Query: 361 GGDQGFLNEVFVWWHRLPRRVNYLKNFWANTTAERALKERLFRADPAEVWSIHYLGLKPW 420
GGDQGFLNEVFVWWHRLPRRVNYLKNFWANTTAERALKERLFRADPAEVWSIHYLGLKPW
Sbjct: 361 GGDQGFLNEVFVWWHRLPRRVNYLKNFWANTTAERALKERLFRADPAEVWSIHYLGLKPW 420
Query: 421 TCYRDYDCNWNIGDQRVYASDAAHARWWQVYDDMGEAMRSPCRLSERRKIEIAWDRHLAE 480
TCYRDYDCNWNIGDQRVYASDAAHARWWQVYDDMGEAMRSPCRLSERRKIEIAWDRHLAE
Sbjct: 421 TCYRDYDCNWNIGDQRVYASDAAHARWWQVYDDMGEAMRSPCRLSERRKIEIAWDRHLAE 480
Query: 481 EAGFSDHHWKINITDPRKWE 500
EAGFSDHHWKINITDPRKWE
Sbjct: 481 EAGFSDHHWKINITDPRKWE 500
>Os01g0880200 Glycosyl transferase, family 8 protein
Length = 635
Score = 487 bits (1253), Expect = e-138, Method: Compositional matrix adjust.
Identities = 250/496 (50%), Positives = 319/496 (64%), Gaps = 31/496 (6%)
Query: 8 RLRMGLVNIGRDEL---LALGVEGDAVGVDFERVSDMFRWSDLFPEWIDEEEDDEGPSCP 64
+L++GL+N E+ L + D + E + W L+PEWIDEEE+ E PSCP
Sbjct: 124 KLKVGLLNFNSTEIGSWTQLLPDSDFSIIRLEHAKESITWQTLYPEWIDEEEETEIPSCP 183
Query: 65 ELPMPDFSRYGDVDVVVASLPCNRSDAAWNRDVFRLQVHLVTAHMA--ARKGLRHDAXXX 122
LP P F R DVV LPC R+ W+RDV RL + L A +A A +G R
Sbjct: 184 SLPDPIFPRGTHFDVVAVKLPCTRA-GGWSRDVARLHLQLSAAKVAVTASRGNR------ 236
Query: 123 XXXXXXXXXXXSECEPMMDLFRCDEAVGRDGEWWMYMVDVERLEEKLRLPVGSCNLALPL 182
++C P+ +LF C V +G WMY D++ L EKLRLPVGSC LA+PL
Sbjct: 237 ----GIHVLFVTDCFPIPNLFSCKNLVKHEGNAWMYKPDLKALREKLRLPVGSCELAVPL 292
Query: 183 WGPGGIQEVFNVSELXXXXXXXGRPRREAYATVLHSSDTYLCGAIVLAQSIRRAGSTRDL 242
+ V RREAYAT+LHS+ Y+CGAI AQSIR+AGSTRD
Sbjct: 293 KAKARLYSVDR--------------RREAYATILHSASEYVCGAITAAQSIRQAGSTRDF 338
Query: 243 VLLHDHTVSKPALAALVAAGWTPRKIKRIRNPRAERGTYNEYNYSKFRLWQLTDYDRVVF 302
V+L D T+S L AAGW R I+RIRNP+AER YNE+NYSKFRLWQLTDYD+++F
Sbjct: 339 VILVDETISNHHRKGLEAAGWKVRIIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIF 398
Query: 303 VDADILVLRDLDALFGFPQLTAVGNDGSLFNSGVMVIEPSQCTFQSLIRQRRTIRSYNGG 362
+DAD+L+LR++D LF P++TA GN+ +LFNSGVMVIEPS CTFQ L+ I SYNGG
Sbjct: 399 IDADLLILRNVDFLFAMPEITATGNNATLFNSGVMVIEPSNCTFQLLMDHINEITSYNGG 458
Query: 363 DQGFLNEVFVWWHRLPRRVNYLKNFWANTTAE-RALKERLFRADPAEVWSIHYLGLKPWT 421
DQG+LNE+F WWHR+P+ +N+LK+FW E + K RLF ADP ++ +HYLGLKPW
Sbjct: 459 DQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEVKVKKTRLFGADPPILYVLHYLGLKPWL 518
Query: 422 CYRDYDCNWNIGDQRVYASDAAHARWWQVYDDMGEAMRSPCRLSERRKIEIAWDRHLAEE 481
C+RDYDCNWN R +ASD AHARWW+V+D M + ++ C L R+K + WDR AE+
Sbjct: 519 CFRDYDCNWNNPILREFASDVAHARWWKVHDKMPKKLQHYCLLRSRQKAGLEWDRRQAEK 578
Query: 482 AGFSDHHWKINITDPR 497
A F+D HW+ NITDPR
Sbjct: 579 ANFTDGHWRRNITDPR 594
>Os02g0556000 Glycosyl transferase, family 8 protein
Length = 654
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/515 (45%), Positives = 298/515 (57%), Gaps = 37/515 (7%)
Query: 4 ELRGRLRMGLVNIGRDEL----LALGVEGDAVGVDFERVSDMFRWSDLFPEWIDEEEDDE 59
E G R+ L+N E+ AL AV ER W L+PEWIDEEE
Sbjct: 115 EHGGGARVALLNFDDGEVQQWRTALPQTAAAVA-RLERAGSNVTWEHLYPEWIDEEELYH 173
Query: 60 GPSCPELPMPDFSRYGD------VDVVVASLPCNRSDAAWNRDVFRLQVHLVTAHMAARK 113
P+CP+LP P GD DVV LPC R W++DV RL + L A +AA +
Sbjct: 174 APTCPDLPEPAVDADGDGEEVAVFDVVAVKLPCRRG-GGWSKDVARLHLQLAAARLAATR 232
Query: 114 GLRHDAXXXXXXXXXXXXXXSECEPMMDLFRC-DEAVGRDGEWWMYMVDVERLEEKLRLP 172
G A S C P+ +LFRC DE RDG+ W+Y D + L L LP
Sbjct: 233 GRGGAAAHVLVVSA------SRCFPIPNLFRCRDEVAPRDGDVWLYRPDADALRRDLALP 286
Query: 173 VGSCNLALPLWGPGGIQEVFNVSELXXXXXXXGRPRREAYATVLHSSDTYLCGAIVLAQS 232
VGSC LA+P ++ PRREAYAT+LHS + Y CGA+V AQS
Sbjct: 287 VGSCRLAMPF---------SALAAPHVAAASAPPPRREAYATILHSEELYACGALVAAQS 337
Query: 233 IRRAGST-------RDLVLLHDHTVSKPALAALVAAGWTPRKIKRIRNPRAERGTYNEYN 285
IR A ++ RD+V L D T+S AL AAGW R I+R+RNPRA YNE+N
Sbjct: 338 IRMASASGAPSEPERDMVALVDETISARHRGALEAAGWKVRAIRRVRNPRAAADAYNEWN 397
Query: 286 YSKFRLWQLTDYDRVVFVDADILVLRDLDALFGFPQLTAVGNDGSLFNSGVMVIEPSQCT 345
YSKF LW LT+YDRVVF+DAD+LV R + LF P+++A N G+LFNSGVMV+EP CT
Sbjct: 398 YSKFWLWSLTEYDRVVFLDADLLVQRPMSPLFAMPEVSATANHGTLFNSGVMVVEPCGCT 457
Query: 346 FQSLIRQRRTIRSYNGGDQGFLNEVFVWWHRLPRRVNYLKNFWANTTAE--RALKERLFR 403
+ L+ I SYNGGDQG+LNEVF WWHRLP N++K+FW + E A + +
Sbjct: 458 LRLLMDHIADIDSYNGGDQGYLNEVFSWWHRLPSHANFMKHFWEGDSGERLAAARRAVLA 517
Query: 404 ADPAEVWSIHYLGLKPWTCYRDYDCNWNIGDQRVYASDAAHARWWQVYDDMGEAMRSPCR 463
A+PA ++H++G+KPW C+RDYDCNWN R +ASD AHARWW+ +D M A++ C
Sbjct: 518 AEPAVALAVHFVGMKPWFCFRDYDCNWNSPQLRQFASDEAHARWWRAHDAMPAALQGFCL 577
Query: 464 LSERRKIEIAWDRHLAEEAGFSDHHWKINITDPRK 498
L ER+K + WD A A FSD HW++ I DPR+
Sbjct: 578 LDERQKALLRWDAAEARAANFSDGHWRVPIADPRR 612
>Os05g0426400 Conserved hypothetical protein
Length = 341
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 8 RLRMGLVNIGRDEL--LALGVEGDAVG-VDFERVSDMFRWSDLFPEWIDEEEDDEGPSCP 64
+L++GL+N E A + G AV V E D W L+PEWIDEEE+ + P+CP
Sbjct: 121 KLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEHAKDSITWDTLYPEWIDEEEETDIPACP 180
Query: 65 ELPMPDFSRYGDVDVVVASLPCNRSDAAWNRDVFRLQVHLVTAHM--AARKGLRHDAXXX 122
LP P+ + DV+ LPC R W+RDV RL + L A + A+ KG
Sbjct: 181 SLPDPNVRKGSHFDVIAVKLPCTRV-GGWSRDVARLHLQLSAAKLAVASSKG-------- 231
Query: 123 XXXXXXXXXXXSECEPMMDLFRCDEAVGRDGEWWMYMVDVERLEEKLRLPVGSCNLALPL 182
++C P+ +LF C V +G W+Y D++ L EKLRLPVGSC LA+PL
Sbjct: 232 --NQKVHVLFVTDCFPIPNLFPCKNLVKHEGNAWLYSPDLKALREKLRLPVGSCELAVPL 289
Query: 183 WGPGGIQ 189
Q
Sbjct: 290 KAKDSTQ 296
>Os02g0624400 Glycosyl transferase, family 8 protein
Length = 547
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 95/164 (57%), Gaps = 1/164 (0%)
Query: 208 RREAYATVLHSSDTYLCGAIVLAQSIRRAGSTRDLVLLHDHTVSKPALAALVAAGWTPRK 267
+ EAY T+L+ D ++ G VL +SIR ++RDLV+L VS+ + L A G+ +
Sbjct: 36 KDEAYVTLLYG-DEFVLGVRVLGKSIRDTDTSRDLVVLVSDGVSEYSRKLLEADGFIVKH 94
Query: 268 IKRIRNPRAERGTYNEYNYSKFRLWQLTDYDRVVFVDADILVLRDLDALFGFPQLTAVGN 327
I + NP R T Y+K +++ +T Y +V ++DAD +V++ ++ +F + A
Sbjct: 95 ITLLANPNQVRPTRFWGVYTKLKIFNMTSYKKVAYLDADTIVVKSIEDIFNCGKFCANLK 154
Query: 328 DGSLFNSGVMVIEPSQCTFQSLIRQRRTIRSYNGGDQGFLNEVF 371
NSGVMV+EPS+ F ++ + ++ SY GGDQGFLN +
Sbjct: 155 HSERMNSGVMVVEPSETLFNDMMDKVNSLPSYTGGDQGFLNSYY 198
>Os03g0316200 Similar to Galactinol synthase (Fragment)
Length = 341
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 118/287 (41%), Gaps = 60/287 (20%)
Query: 211 AYATVLHSSDTYLCGAIVLAQSIRRAGSTRDLVLLHDHTVSKPALAALVAAGWTPRKIKR 270
AY T L Y G + LA+ +R+ GS LV+ V + L++ G R+I+
Sbjct: 24 AYVTFLAGDGDYWKGVVGLAKGLRKVGSAYPLVVAVLPDVPESHRRILISQGCIVREIEP 83
Query: 271 IRNPRAERG---TYNEYNYSKFRLWQLTDYDRVVFVDADILVLRDLDALFGFPQ------ 321
+ P + Y NYSK R+W+ +Y+R+V++DADI V ++D LF P+
Sbjct: 84 VYPPENQTQFAMAYYVINYSKLRIWEFVEYERMVYLDADIQVFDNIDELFELPKGHFYAV 143
Query: 322 ------------------------------LTAVGNDGSL-FNSGVMVIEPSQCTFQSLI 350
+G +L FN+G+ V EPS T +SL+
Sbjct: 144 MDCFCEKTWSHTPQYQIGYCQQCPDKVAWPTAELGPPPALYFNAGMFVHEPSMATAKSLL 203
Query: 351 RQRRTIRSYNGGDQGFLNEVFVWWHR-LPRRVNY-LKNFWANTTAERALKERLFRADPAE 408
R +Q FLN F ++ +P N L W + + K ++
Sbjct: 204 DTLRVTTPTPFAEQDFLNMFFREQYKPIPLIYNLVLAMLWRHPENVQLEKVKV------- 256
Query: 409 VWSIHYL--GLKPWTCYRDYDCNWNIGDQRVYASDAAHARWWQVYDD 453
+HY G KPW Y + N + D ++ +WW VY+D
Sbjct: 257 ---VHYCAAGSKPWR-YTGKEANMDREDIKMLVK-----KWWDVYND 294
>Os04g0553800 Glycosyl transferase, family 8 protein
Length = 428
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 228 VLAQSIRRAGSTRDLVLLHDHTVSKPALAALVAAGWTPRKIKRIRNPRAERGTYN---EY 284
V+ +S+ R GS D V++ V + AL G ++ ++NP ++G +N +
Sbjct: 18 VMMRSLGRLGSDADRVVIASVDVPPRWVQALKDDGVKVVSVENLKNPYEKQGNFNMRFKL 77
Query: 285 NYSKFRLWQLTDYDRVVFVDADILVLRDLDALFGFPQLTAVGNDGSLFNSGVMVIEPSQC 344
+K W L YDRVV +D+D + L++ D LF Q AV + +F++G+ V++PS
Sbjct: 78 TLNKLYAWSLVSYDRVVMLDSDNIFLQNTDELFQCGQFCAVFINPCIFHTGLFVLQPSMD 137
Query: 345 TFQSLIRQRRTIR-SYNGGDQGFLNEVF 371
F++++ + R + +G DQGFL F
Sbjct: 138 VFKNMLHELAVGRDNPDGADQGFLASYF 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,987,933
Number of extensions: 778013
Number of successful extensions: 1607
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1597
Number of HSP's successfully gapped: 7
Length of query: 500
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 395
Effective length of database: 11,553,331
Effective search space: 4563565745
Effective search space used: 4563565745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)