Os05g0426400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0426400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.9 | 0.743 | 9.36 | -6.69 | 0.562 | -2.14 | 0.459 | 6.5 | -0.602 | 5.22 | 25.8 | 5821 | -- | -- |
| 260.04 | 0.751 | 9.2 | -5.66 | 0.561 | -2.24 | 0.659 | -- | -0.506 | 4.97 | 21.5 | 8919 | -- | -- |
| 246.66 | 0.731 | 9.37 | -6.7 | 0.647 | -2.02 | -- | 5.88 | -0.662 | 6.08 | 25.75 | 6520 | -- | -- |
| 260.38 | 0.752 | 9.21 | -5.73 | 0.553 | -2.33 | -- | -- | -0.544 | 5.44 | 21.44 | 8959 | -- | -- |
| 260.37 | 0.752 | 9.39 | -6.65 | -- | -2.06 | -- | 5.67 | -0.785 | -- | 26.9 | 7048 | -- | -- |
| 375.75 | 0.909 | 9.01 | -4 | 0.564 | -- | 0.688 | -- | 0.329 | 4.67 | -- | -- | -- | -- |
| 376.7 | 0.909 | 9.01 | -4 | 0.578 | -- | -- | -- | 0.326 | 5.14 | -- | -- | -- | -- |
| 276.06 | 0.774 | 9.22 | -5.71 | -- | -2.34 | -- | -- | -0.533 | -- | 21.5 | 8774 | -- | -- |
| 788.6 | 1.31 | 8.92 | -- | 0.672 | -0.582 | -- | -- | 0.635 | 7.04 | 25.5 | 769 | -- | -- |
| 394.17 | 0.928 | 9.02 | -3.98 | -- | -- | -- | -- | 0.341 | -- | -- | -- | -- | -- |
| 798.81 | 1.32 | 8.91 | -- | 0.509 | -- | -- | -- | 0.772 | 5.42 | -- | -- | -- | -- |
| 793.4 | 1.31 | 8.91 | -- | -- | -0.491 | -- | -- | 0.876 | -- | 33.9 | 1377 | -- | -- |
| 812.32 | 1.33 | 8.92 | -- | -- | -- | -- | -- | 0.782 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 229.08 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 2 | 229.17 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 3 | 229.37 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 13 | 231.15 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 13 |
| 18 | 231.49 | wind | 5 | 43200 | > th | dose independent | sin | 23 | NA |
| 24 | 231.63 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 27 | 231.79 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 32 | 231.88 | wind | 5 | 43200 | < th | dose independent | sin | 23 | NA |
| 44 | 232.23 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 63 | 232.65 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 72 | 232.94 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 75 | 232.99 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 113 | 233.58 | wind | 5 | 43200 | > th | dose dependent | sin | 22 | NA |
| 128 | 233.82 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 161 | 234.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 197 | 234.76 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 222 | 234.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 285 | 235.71 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 440 | 237.54 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 474 | 237.81 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 622 | 238.72 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 784 | 239.75 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 787 | 239.78 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 845 | 240.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 858 | 240.36 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 862 | 240.40 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 876 | 240.52 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 878 | 240.54 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 893 | 240.64 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 913 | 240.80 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 964 | 241.18 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 967 | 241.20 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |