BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0426400 Os05g0426400|AK064877
         (341 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0426400  Conserved hypothetical protein                      681   0.0  
Os01g0880200  Glycosyl transferase, family 8 protein              439   e-123
Os02g0556000  Glycosyl transferase, family 8 protein              187   7e-48
Os03g0184300  Glycosyl transferase, family 8 protein              104   1e-22

>Os05g0426400 Conserved hypothetical protein
          Length = 341

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/341 (96%), Positives = 329/341 (96%)

Query: 1   MGSLETRYRPAGAPSDDTTKRRTPKSRIYKDVENFGVLVLEKNSGCKFKTLRYLLLAITS 60
           MGSLETRYRPAGAPSDDTTKRRTPKSRIYKDVENFGVLVLEKNSGCKFKTLRYLLLAITS
Sbjct: 1   MGSLETRYRPAGAPSDDTTKRRTPKSRIYKDVENFGVLVLEKNSGCKFKTLRYLLLAITS 60

Query: 61  ATFLTLLTPTFYEHQLQSSRYVDVGWIWDKPSYDPRYVSSVDVQWEDVYKALENLNDGSQ 120
           ATFLTLLTPTFYEHQLQSSRYVDVGWIWDKPSYDPRYVSSVDVQWEDVYKALENLNDGSQ
Sbjct: 61  ATFLTLLTPTFYEHQLQSSRYVDVGWIWDKPSYDPRYVSSVDVQWEDVYKALENLNDGSQ 120

Query: 121 KLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEHAKDSITWDTLYPEWIDEEEETDIPACP 180
           KLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEHAKDSITWDTLYPEWIDEEEETDIPACP
Sbjct: 121 KLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEHAKDSITWDTLYPEWIDEEEETDIPACP 180

Query: 181 SLPDPNVRKGSHFDVIAVKLPCTRVGGWSRDVARLHLQXXXXXXXXXXXXGNQKVHVLFV 240
           SLPDPNVRKGSHFDVIAVKLPCTRVGGWSRDVARLHLQ            GNQKVHVLFV
Sbjct: 181 SLPDPNVRKGSHFDVIAVKLPCTRVGGWSRDVARLHLQLSAAKLAVASSKGNQKVHVLFV 240

Query: 241 TDCFPIPNLFPCKNLVKHEGNAWLYSPDLKALREKLRLPVGSCELAVPLKAKDSTQWIEE 300
           TDCFPIPNLFPCKNLVKHEGNAWLYSPDLKALREKLRLPVGSCELAVPLKAKDSTQWIEE
Sbjct: 241 TDCFPIPNLFPCKNLVKHEGNAWLYSPDLKALREKLRLPVGSCELAVPLKAKDSTQWIEE 300

Query: 301 EKHMLLSCTQQVNMSVVLSQQLKAFAKQGQLGIWLSLSMTR 341
           EKHMLLSCTQQVNMSVVLSQQLKAFAKQGQLGIWLSLSMTR
Sbjct: 301 EKHMLLSCTQQVNMSVVLSQQLKAFAKQGQLGIWLSLSMTR 341



>Os01g0880200 Glycosyl transferase, family 8 protein
          Length = 635

 Score =  439 bits (1130), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/331 (67%), Positives = 259/331 (78%), Gaps = 9/331 (2%)

Query: 1   MGSLET---RYRPAGAPSDDTTKRRTPKSRIYKDVENFGVLVLEKNSGCKFKTLRYLLLA 57
           MGSLET   RYRPAGA +DDT KRRT KS+ +K+VE F V VLEK+SGCKF++L+ LL A
Sbjct: 1   MGSLETTNTRYRPAGA-ADDTAKRRTQKSKSFKEVEKFDVFVLEKSSGCKFRSLQLLLFA 59

Query: 58  ITSATFLTLL-TPTFYEHQLQSSRYVDVGWIWDKPSYDPRYVSSVDVQWEDVYKALENLN 116
           I SA FLTLL TP+ Y+HQ+QSS     GWIWDK   DPRYVSS+ VQWEDVYK +ENLN
Sbjct: 60  IMSAAFLTLLYTPSVYDHQMQSSSRFVSGWIWDKTIPDPRYVSSLGVQWEDVYKTVENLN 119

Query: 117 DGSQKLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEHAKDSITWDTLYPEWIDEEEETDI 176
           DG +KLKVGLLNFNSTE GSW QLLP S  SI+RLEHAK+SITW TLYPEWIDEEEET+I
Sbjct: 120 DGERKLKVGLLNFNSTEIGSWTQLLPDSDFSIIRLEHAKESITWQTLYPEWIDEEEETEI 179

Query: 177 PACPSLPDPNVRKGSHFDVIAVKLPCTRVGGWSRDVARLHLQXXXXXXXXXXXXGNQKVH 236
           P+CPSLPDP   +G+HFDV+AVKLPCTR GGWSRDVARLHLQ            GN+ +H
Sbjct: 180 PSCPSLPDPIFPRGTHFDVVAVKLPCTRAGGWSRDVARLHLQLSAAKVAVTASRGNRGIH 239

Query: 237 VLFVTDCFPIPNLFPCKNLVKHEGNAWLYSPDLKALREKLRLPVGSCELAVPLKAKDSTQ 296
           VLFVTDCFPIPNLF CKNLVKHEGNAW+Y PDLKALREKLRLPVGSCELAVPLKAK    
Sbjct: 240 VLFVTDCFPIPNLFSCKNLVKHEGNAWMYKPDLKALREKLRLPVGSCELAVPLKAKARLY 299

Query: 297 WIEEEKH----MLLSCTQQVNMSVVLSQQLK 323
            ++  +     +L S ++ V  ++  +Q ++
Sbjct: 300 SVDRRREAYATILHSASEYVCGAITAAQSIR 330



>Os02g0556000 Glycosyl transferase, family 8 protein
          Length = 654

 Score =  187 bits (476), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 115/270 (42%), Positives = 154/270 (57%), Gaps = 26/270 (9%)

Query: 39  VLEKNSGCKFKTLRYLLLAITSATFLTLL-TPTFY---EHQLQSSRYVDVGWIWDKPSYD 94
           +L + S  K   ++ +L+ +   +F++LL +P+ +   +H  +SS  V       + SY+
Sbjct: 34  LLPEGSNPKMLYVKLVLIILMCGSFVSLLNSPSIHHNDDHHTESSAGVP------RVSYE 87

Query: 95  P---RYVSSVDVQWEDVYKALENLNDGSQK---LKVGLLNFNSTEYGSWAQLLPGSAVSI 148
           P   RYVS V V W  + KA++ L  G++     +V LLNF+  E   W   LP +A ++
Sbjct: 88  PDDTRYVSDVTVDWPKISKAMQ-LVAGAEHGGGARVALLNFDDGEVQQWRTALPQTAAAV 146

Query: 149 VRLEHAKDSITWDTLYPEWIDEEEETDIPACPSLPDPNVRKGSH------FDVIAVKLPC 202
            RLE A  ++TW+ LYPEWIDEEE    P CP LP+P V           FDV+AVKLPC
Sbjct: 147 ARLERAGSNVTWEHLYPEWIDEEELYHAPTCPDLPEPAVDADGDGEEVAVFDVVAVKLPC 206

Query: 203 TRVGGWSRDVARLHLQXXXXXXXXXXXXGNQKVHVLFV--TDCFPIPNLFPCKNLVK-HE 259
            R GGWS+DVARLHLQ            G    HVL V  + CFPIPNLF C++ V   +
Sbjct: 207 RRGGGWSKDVARLHLQLAAARLAATRGRGGAAAHVLVVSASRCFPIPNLFRCRDEVAPRD 266

Query: 260 GNAWLYSPDLKALREKLRLPVGSCELAVPL 289
           G+ WLY PD  ALR  L LPVGSC LA+P 
Sbjct: 267 GDVWLYRPDADALRRDLALPVGSCRLAMPF 296



>Os03g0184300 Glycosyl transferase, family 8 protein
          Length = 500

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 90/185 (48%), Gaps = 12/185 (6%)

Query: 121 KLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEHAKDSITWDTLYPEWIDEEEETDIPACP 180
           +L++GL+N    E    A  + G AV  V  E   D   W  L+PEWIDEEE+ + P+CP
Sbjct: 8   RLRMGLVNIGRDEL--LALGVEGDAVG-VDFERVSDMFRWSDLFPEWIDEEEDDEGPSCP 64

Query: 181 SLPDPNVRKGSHFDVIAVKLPCTRV-GGWSRDVARLHLQXXXXXXXXXXXXGNQKVHVLF 239
            LP P+  +    DV+   LPC R    W+RDV RL +              +       
Sbjct: 65  ELPMPDFSRYGDVDVVVASLPCNRSDAAWNRDVFRLQVHLVTAHMAARKGLRHDAGGGGG 124

Query: 240 V--------TDCFPIPNLFPCKNLVKHEGNAWLYSPDLKALREKLRLPVGSCELAVPLKA 291
                    ++C P+ +LF C   V  +G  W+Y  D++ L EKLRLPVGSC LA+PL  
Sbjct: 125 GGRVRVVVRSECEPMMDLFRCDEAVGRDGEWWMYMVDVERLEEKLRLPVGSCNLALPLWG 184

Query: 292 KDSTQ 296
               Q
Sbjct: 185 PGGIQ 189



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,913,647
Number of extensions: 484547
Number of successful extensions: 1104
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1097
Number of HSP's successfully gapped: 4
Length of query: 341
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 239
Effective length of database: 11,709,973
Effective search space: 2798683547
Effective search space used: 2798683547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)