BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0426400 Os05g0426400|AK064877
(341 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18660.2 | chr3:6419211-6421959 REVERSE LENGTH=660 219 1e-57
AT1G77130.1 | chr1:28979066-28981228 REVERSE LENGTH=619 193 1e-49
AT4G33330.2 | chr4:16059754-16063061 REVERSE LENGTH=627 115 3e-26
AT1G54940.1 | chr1:20481690-20484541 FORWARD LENGTH=558 106 2e-23
AT1G08990.1 | chr1:2888753-2890753 FORWARD LENGTH=567 99 3e-21
>AT3G18660.2 | chr3:6419211-6421959 REVERSE LENGTH=660
Length = 659
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/264 (45%), Positives = 162/264 (61%), Gaps = 21/264 (7%)
Query: 41 EKNSGC----KFKTLRYLLLAITSATFLTLL-TPTFYEHQLQSSRYVDVGWIWDKPSYDP 95
+KNS C KF+ ++ LL + SAT T++ +P Y H L S WIW + DP
Sbjct: 59 DKNSSCCCFTKFQIVKLLLFILLSATLFTIIYSPEAYHHSLSHSS---SRWIWRRQ--DP 113
Query: 96 RYVSSVDVQWEDVYKALENLNDGSQKLKVGLLNFNSTEYGSWAQLLPG------SAVSIV 149
RY S +D+ W+DV K LEN+ +G +G+LNF+S E W ++ V ++
Sbjct: 114 RYFSDLDINWDDVTKTLENIEEGRT---IGVLNFDSNEIQRWREVSKSKDNGDEEKVVVL 170
Query: 150 RLEHAKDSITWDTLYPEWIDEEEETDIPACPSLPDPNVRKGSHFDVIAVKLPCTRVGGWS 209
L++A ++TWD LYPEWIDEE+ET++P CP++P+ V D+I VKLPC + G WS
Sbjct: 171 NLDYADKNVTWDALYPEWIDEEQETEVPVCPNIPNIKV-PTRRLDLIVVKLPCRKEGNWS 229
Query: 210 RDVARLHLQXXXXXXXXXXXXGNQKVHVLFVTDCFPIPNLFPCKNLVKHEGNAWLYSPDL 269
RDV RLHLQ G + HV FV+ CFPIPNLF CK+LV G+ WLY P+L
Sbjct: 230 RDVGRLHLQLAAATVAASAK-GFFRGHVFFVSRCFPIPNLFRCKDLVSRRGDVWLYKPNL 288
Query: 270 KALREKLRLPVGSCELAVPLKAKD 293
LR+KL+LPVGSCEL++PL +D
Sbjct: 289 DTLRDKLQLPVGSCELSLPLGIQD 312
>AT1G77130.1 | chr1:28979066-28981228 REVERSE LENGTH=619
Length = 618
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 166/296 (56%), Gaps = 32/296 (10%)
Query: 4 LETRYRPAGAPSDDTTKRRTPKSRIYKDVENFGVLVLEKNSGCKFKTLRYLLLAITSATF 63
+E+R+R + + ++ T++RR ++ +E G KF TL+ +L+ I
Sbjct: 8 MESRHRLSFS-NEKTSRRR------FQRIE----------KGVKFNTLKLVLICIMLGAL 50
Query: 64 LTLLT---PTFYEHQLQSSRYVDVGWIWDKPSYDPRYVSSVDVQWEDVYKALENLNDG-S 119
T+ P ++ +S + + DPRYV++ ++ W + +E G S
Sbjct: 51 FTIYRFRYPPLQIPEIPTSFGL---------TTDPRYVATAEINWNHMSNLVEKHVFGRS 101
Query: 120 QKLKVGLLNFNSTEYGSWAQLLPGSAVSI-VRLEHAKDSITWDTLYPEWIDEEEETDIPA 178
+ +GL+N N E + ++ + + L++A +ITW++LYPEWIDE EE ++P
Sbjct: 102 EYQGIGLINLNDNEIDRFKEVTKSDCDHVALHLDYAAKNITWESLYPEWIDEVEEFEVPT 161
Query: 179 CPSLPDPNVRKGSHFDVIAVKLPCTRVGGWSRDVARLHLQXXXXXXXXXXXXGNQKVHVL 238
CPSLP + D++ KLPC + G WSRDVARLHLQ G VHV+
Sbjct: 162 CPSLPLIQIPGKPRIDLVIAKLPCDKSGKWSRDVARLHLQLAAARVAASSK-GLHNVHVI 220
Query: 239 FVTDCFPIPNLFPCKNLVKHEGNAWLYSPDLKALREKLRLPVGSCELAVPLKAKDS 294
V+DCFPIPNLF + LV +GN WLY P+L LR+KL+LPVGSCEL+VPL+AKD+
Sbjct: 221 LVSDCFPIPNLFTGQELVARQGNIWLYKPNLHQLRQKLQLPVGSCELSVPLQAKDN 276
>AT4G33330.2 | chr4:16059754-16063061 REVERSE LENGTH=627
Length = 626
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 96/182 (52%), Gaps = 6/182 (3%)
Query: 113 ENLNDGSQKLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEHAKDSITWDTLYPEWIDEEE 172
E L G K K+G++N + +W + G V I E W L+PEWIDEEE
Sbjct: 100 EILTRGLGKTKIGMVNMEECDLTNWKRY--GETVHI-HFERVSKLFKWQDLFPEWIDEEE 156
Query: 173 ETDIPACPSLPDPNVRKGSHFDVIAVKLPCTR-VGGWSRDVARLHLQXXXXXXXXXXXXG 231
ET++P CP +P P+ D++ VKLPC GW R+V RL +
Sbjct: 157 ETEVPTCPEIPMPDFESLEKLDLVVVKLPCNYPEEGWRREVLRLQVNLVAANLAAKKGKT 216
Query: 232 N--QKVHVLFVTDCFPIPNLFPCKNLVKHEGNAWLYSPDLKALREKLRLPVGSCELAVPL 289
+ K VLF + C P+ +F C +L K E + WLY P++ L+++L LPVGSC LA+PL
Sbjct: 217 DWRWKSKVLFWSKCQPMIEIFRCDDLEKREADWWLYRPEVVRLQQRLSLPVGSCNLALPL 276
Query: 290 KA 291
A
Sbjct: 277 WA 278
>AT1G54940.1 | chr1:20481690-20484541 FORWARD LENGTH=558
Length = 557
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 94/176 (53%), Gaps = 16/176 (9%)
Query: 120 QKLKVGLLNFNSTEYGSWAQLLPGSAVSI-VRLEHAKDSITWDTLYPEWIDEEEETDIPA 178
++++VG LN + E S+ P +I V L+H ++TW +LYPEWI+EE T
Sbjct: 70 KRIQVGFLNIDEKERESYEARGPLVLKNIHVPLDHIPKNVTWKSLYPEWINEEAST---- 125
Query: 179 CPSLPDPNVRKG-SHFDVIAVKLPCTRVGGWS-----RDVARL--HLQXXXXXXXXXXXX 230
CP +P P ++ DVI ++PC GWS RDV RL +L
Sbjct: 126 CPEIPLPQPEGSDANVDVIVARVPCD---GWSANKGLRDVFRLQVNLAAANLAVQSGLRT 182
Query: 231 GNQKVHVLFVTDCFPIPNLFPCKNLVKHEGNAWLYSPDLKALREKLRLPVGSCELA 286
NQ V+V+F+ C P+ +FPC V + W+Y P L L++KL +PVGSC++A
Sbjct: 183 VNQAVYVVFIGSCGPMHEIFPCDERVMRVEDYWVYKPYLPRLKQKLLMPVGSCQIA 238
>AT1G08990.1 | chr1:2888753-2890753 FORWARD LENGTH=567
Length = 566
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 145/296 (48%), Gaps = 38/296 (12%)
Query: 42 KNSGCKFKTLRYLLLAITSATFLTLLTPTFYEHQLQSSRYVDVGWIWDKPSY-DPRYVSS 100
K+S +F +L++++ L P F + + +S PS + RY
Sbjct: 6 KSSSTRFFMFYLILISLSFLGLLLNFKPLFLLNPMIAS-----------PSIVEIRYSLP 54
Query: 101 VDVQWEDVY-KALENLNDGSQKLKVGLLNFNSTEYGSWAQLLPGSAVSI-----VRLEHA 154
V+ ++ + + N +K++VGLLN E S+ S SI V L+
Sbjct: 55 EPVKRTPIWLRLIRNYLPDEKKIRVGLLNIAENERESYE----ASGTSILENVHVSLDPL 110
Query: 155 KDSITWDTLYPEWIDEEEETDIPACPSLPDPNVRKG-SHFDVIAVKLPCTRVGGWS---- 209
+++TW +L+P WIDE+ IP+CP +P P + + DV+ VK+PC G+S
Sbjct: 111 PNNLTWTSLFPVWIDEDHTWHIPSCPEVPLPKMEGSEADVDVVVVKVPCD---GFSEKRG 167
Query: 210 -RDVARLHLQXXXXXXXXXXXXGN--QKVHVLFVTDCFPIPNLFPCKNLVKHEGNAWLYS 266
RDV RL + N + V+V+F+ C P+ +F C VK G+ W+Y
Sbjct: 168 LRDVFRLQVNLAAANLVVESGRRNVDRTVYVVFIGSCGPMHEIFRCDERVKRVGDYWVYR 227
Query: 267 PDLKALREKLRLPVGSCELAVPLKAKDSTQWIEEEKHMLLSCTQQVNMSVVLSQQL 322
PDL L++KL +P GSC++A PL ++ WI+++ L S ++ +S +Q++
Sbjct: 228 PDLTRLKQKLLMPPGSCQIA-PLGQGEA--WIQDKNRNLTS--EKTTLSSFTAQRV 278
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,732,807
Number of extensions: 321058
Number of successful extensions: 830
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 5
Length of query: 341
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 242
Effective length of database: 8,392,385
Effective search space: 2030957170
Effective search space used: 2030957170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)