BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0819300 Os02g0819300|J023039H08
(68 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0819300 Similar to Maternal pumilio protein. Splice is... 141 1e-34
Os01g0971900 Similar to BPM 86 4e-18
Os01g0844800 Similar to Pumilio RBD (Fragment) 84 3e-17
Os08g0519800 Similar to Maternal pumilio protein. Splice is... 79 6e-16
Os09g0497100 Similar to Pumilio RBD (Fragment) 77 2e-15
Os04g0201200 Armadillo-like helical domain containing protein 76 7e-15
Os12g0574400 Similar to BPM 68 2e-12
>Os02g0819300 Similar to Maternal pumilio protein. Splice isoform E
Length = 68
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 YTQTSCCSSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQKVSSPT 60
YTQTSCCSSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQKVSSPT
Sbjct: 1 YTQTSCCSSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQKVSSPT 60
Query: 61 IPSVFGKK 68
IPSVFGKK
Sbjct: 61 IPSVFGKK 68
>Os01g0971900 Similar to BPM
Length = 894
Score = 86.3 bits (212), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/48 (83%), Positives = 44/48 (91%)
Query: 8 SSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQK 55
S+DQYGSRFIQQKLETAS EEKD +F EI+PQA TLMTDVFGNYV+QK
Sbjct: 568 SADQYGSRFIQQKLETASTEEKDMVFAEIMPQALTLMTDVFGNYVVQK 615
>Os01g0844800 Similar to Pumilio RBD (Fragment)
Length = 1060
Score = 84.0 bits (206), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/48 (79%), Positives = 44/48 (91%)
Query: 8 SSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQK 55
S+DQYGSRFIQQKLETA+ EEKD +F EI+PQA +LMTDVFGNYV+QK
Sbjct: 734 SADQYGSRFIQQKLETATVEEKDMVFKEIMPQALSLMTDVFGNYVVQK 781
>Os08g0519800 Similar to Maternal pumilio protein. Splice isoform E
Length = 1001
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 42/48 (87%)
Query: 8 SSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQK 55
S+DQ+GSRFIQQKLE +AEEK ++F E+LP A +LMTDVFGNYVIQK
Sbjct: 681 SADQHGSRFIQQKLENCTAEEKASVFSEVLPHASSLMTDVFGNYVIQK 728
>Os09g0497100 Similar to Pumilio RBD (Fragment)
Length = 988
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 39/48 (81%)
Query: 8 SSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQK 55
SSDQ GSRFIQQKLE + EEKD +F E+LP A LMTDVFGNYVIQK
Sbjct: 660 SSDQNGSRFIQQKLENCTIEEKDLLFAEVLPHALELMTDVFGNYVIQK 707
>Os04g0201200 Armadillo-like helical domain containing protein
Length = 795
Score = 75.9 bits (185), Expect = 7e-15, Method: Composition-based stats.
Identities = 35/48 (72%), Positives = 40/48 (83%)
Query: 8 SSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQK 55
S DQ+GSRFIQQKLE ASA++++ IFPEIL A L TDVFGNYVIQK
Sbjct: 457 SMDQFGSRFIQQKLEVASADDREKIFPEILTNAIALTTDVFGNYVIQK 504
>Os12g0574400 Similar to BPM
Length = 1274
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 39/50 (78%)
Query: 7 CSSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQKV 56
CS DQ GSRFIQQKL TA+ +EK +F EI+P ++TDVFGNYV+QK+
Sbjct: 933 CSIDQCGSRFIQQKLPTATPDEKLMVFKEIMPHFLEMVTDVFGNYVLQKM 982
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,986,715
Number of extensions: 54688
Number of successful extensions: 156
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 7
Length of query: 68
Length of database: 17,035,801
Length adjustment: 40
Effective length of query: 28
Effective length of database: 14,947,241
Effective search space: 418522748
Effective search space used: 418522748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)