BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0798900 Os02g0798900|AK068929
(207 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0798900 Conserved hypothetical protein 421 e-118
Os12g0516900 Cyclin-like F-box domain containing protein 221 2e-58
Os04g0370600 4Fe-4S ferredoxin, iron-sulfur binding domain ... 219 2e-57
Os04g0370300 Conserved hypothetical protein 217 6e-57
Os04g0370500 Leucine-rich repeat, cysteine-containing conta... 211 2e-55
Os12g0526600 Cyclin-like F-box domain containing protein 211 3e-55
Os12g0517000 Cyclin-like F-box domain containing protein 200 7e-52
Os12g0517100 Cyclin-like F-box domain containing protein 187 5e-48
Os04g0371600 Leucine-rich repeat, cysteine-containing conta... 155 2e-38
Os04g0370800 70 1e-12
>Os02g0798900 Conserved hypothetical protein
Length = 207
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MDNLSEPLLAEIIKRIAKTSDRNSLSLVSKQLYTIDAEQRDAIHVGCGLHPATEALASLC 60
MDNLSEPLLAEIIKRIAKTSDRNSLSLVSKQLYTIDAEQRDAIHVGCGLHPATEALASLC
Sbjct: 1 MDNLSEPLLAEIIKRIAKTSDRNSLSLVSKQLYTIDAEQRDAIHVGCGLHPATEALASLC 60
Query: 61 SRFPNLWKVVIDYSGWISIHGKQLDNQGLLVLSSHCSSLTDLTLNFCSYIDDSGIGYLAY 120
SRFPNLWKVVIDYSGWISIHGKQLDNQGLLVLSSHCSSLTDLTLNFCSYIDDSGIGYLAY
Sbjct: 61 SRFPNLWKVVIDYSGWISIHGKQLDNQGLLVLSSHCSSLTDLTLNFCSYIDDSGIGYLAY 120
Query: 121 CKKLRSFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMKVGSVEWLEYLGRAGSLEELV 180
CKKLRSFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMKVGSVEWLEYLGRAGSLEELV
Sbjct: 121 CKKLRSFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMKVGSVEWLEYLGRAGSLEELV 180
Query: 181 VKDCKCRNKSWLVGLGLVVPFSCFSAF 207
VKDCKCRNKSWLVGLGLVVPFSCFSAF
Sbjct: 181 VKDCKCRNKSWLVGLGLVVPFSCFSAF 207
>Os12g0516900 Cyclin-like F-box domain containing protein
Length = 390
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/197 (60%), Positives = 152/197 (77%), Gaps = 1/197 (0%)
Query: 1 MDNLSEPLLAEIIKRIAKTSDRNSLSLVSKQLYTIDAEQRDAIHVGCGLHPATEALASLC 60
M++L + L+ EI+KR++ TSD +SLSLVSK+LY I+AE R IH+ C L PAT+A+ SLC
Sbjct: 1 MEDLPDALIGEIVKRVSSTSDLSSLSLVSKRLYKIEAESRHTIHISCSLGPATDAIVSLC 60
Query: 61 SRFPNLWKVVIDYSGWISIHGKQLDNQGLLVLSSHCSSLTDLTLNFCSYIDDSGIGYLAY 120
SRF NL KV I+YSGW HG QLDN GL +LSS+C SL+D+TL+FCSYIDD+G+GYLA+
Sbjct: 61 SRFHNLLKVDINYSGWTQDHGNQLDNHGLRILSSYCLSLSDITLSFCSYIDDTGLGYLAF 120
Query: 121 CKKLRSFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMKV-GSVEWLEYLGRAGSLEEL 179
CKKL + RLN A I+S GLL+VAVGCK+L HL+DC K+ G+ EWL+YLG GSLEEL
Sbjct: 121 CKKLITLRLNSATKITSSGLLAVAVGCKNLSALHLIDCNKISGAFEWLKYLGSDGSLEEL 180
Query: 180 VVKDCKCRNKSWLVGLG 196
VK+C N+ L+ G
Sbjct: 181 KVKNCVGINQYSLLMFG 197
>Os04g0370600 4Fe-4S ferredoxin, iron-sulfur binding domain containing protein
Length = 479
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/186 (60%), Positives = 140/186 (75%), Gaps = 3/186 (1%)
Query: 1 MDNLSEPLLAEIIKRIAKTSDRNSLSLVSKQLYTIDAEQRDAIHVGCGLHPATEALASLC 60
M++LSE L+ EI+KRI +TSD NS+SLVSKQLY IDAEQR I +GCGL +TE ++LC
Sbjct: 1 MEHLSEELIIEILKRITRTSDLNSVSLVSKQLYAIDAEQRATICIGCGL--STEDFSALC 58
Query: 61 SRFPNLWKVVIDYSGWISIHGKQLDNQGLLVLSSHCSSLTDLTLNFCSYIDDSGIGYLAY 120
SRFPNL KV IDYSG +G +DNQGL VL+S C+ L D+TL+FCS I+D+GI L Y
Sbjct: 59 SRFPNLLKVEIDYSGSTPGNGNHIDNQGLFVLTSCCTLLNDITLSFCSKINDAGIACLTY 118
Query: 121 CKKLRSFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMKV-GSVEWLEYLGRAGSLEEL 179
CKKL S +LN P ++S GLL VA GCK+L + +L DC + GS EWLEYLG GSLEEL
Sbjct: 119 CKKLMSLKLNSIPEVTSSGLLMVAFGCKALSSLYLNDCKGIAGSTEWLEYLGSDGSLEEL 178
Query: 180 VVKDCK 185
+V +CK
Sbjct: 179 IVSNCK 184
>Os04g0370300 Conserved hypothetical protein
Length = 192
Score = 217 bits (552), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 114/186 (61%), Positives = 139/186 (74%), Gaps = 3/186 (1%)
Query: 1 MDNLSEPLLAEIIKRIAKTSDRNSLSLVSKQLYTIDAEQRDAIHVGCGLHPATEALASLC 60
M++LSE L+ EI+K+I +TSD NSLSLVSKQLYTIDAEQR AI +GCGL ATE +LC
Sbjct: 1 MEHLSEELIIEILKKITRTSDLNSLSLVSKQLYTIDAEQRAAIRLGCGL--ATEDFLALC 58
Query: 61 SRFPNLWKVVIDYSGWISIHGKQLDNQGLLVLSSHCSSLTDLTLNFCSYIDDSGIGYLAY 120
SRFPNL KV IDYSG +G +DNQGL VLSS C+ L D+TL FCS I+D+GI L+Y
Sbjct: 59 SRFPNLLKVEIDYSGSTPGNGNHIDNQGLFVLSSCCTLLNDITLTFCSKINDAGIVCLSY 118
Query: 121 CKKLRSFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMKV-GSVEWLEYLGRAGSLEEL 179
CKKL S +LN P ++S GLL + GCK+L + + DC + GS EWLEYLG GSLEEL
Sbjct: 119 CKKLISLKLNSLPEVTSSGLLMLFFGCKALSSLFINDCKGIAGSTEWLEYLGTDGSLEEL 178
Query: 180 VVKDCK 185
VV +C+
Sbjct: 179 VVNNCQ 184
>Os04g0370500 Leucine-rich repeat, cysteine-containing containing protein
Length = 480
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/185 (61%), Positives = 135/185 (72%), Gaps = 3/185 (1%)
Query: 1 MDNLSEPLLAEIIKRIAKTSDRNSLSLVSKQLYTIDAEQRDAIHVGCGLHPATEALASLC 60
M+ LSE L+ EI+KRI +TSD NSLSLVSKQLY IDAEQR I + CGL +TE ++LC
Sbjct: 1 MERLSEELIIEILKRITRTSDLNSLSLVSKQLYAIDAEQRATICIDCGL--STEDFSALC 58
Query: 61 SRFPNLWKVVIDYSGWISIHGKQLDNQGLLVLSSHCSSLTDLTLNFCSYIDDSGIGYLAY 120
SRFPNL KV I SG +G +DNQGL VLSS C+SL DLTL+FCS I+D+GI L Y
Sbjct: 59 SRFPNLLKVEIGNSGSTPGNGNHIDNQGLFVLSSSCNSLNDLTLSFCSKINDAGIASLTY 118
Query: 121 CKKLRSFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMKV-GSVEWLEYLGRAGSLEEL 179
CKKL S +LN P ++S GLL VA GCK+L + +L DC + S EWLEYLG GSLEEL
Sbjct: 119 CKKLMSLKLNSIPDVTSSGLLLVAFGCKALSSLYLNDCKGIAASTEWLEYLGSDGSLEEL 178
Query: 180 VVKDC 184
VV +C
Sbjct: 179 VVNNC 183
>Os12g0526600 Cyclin-like F-box domain containing protein
Length = 203
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/186 (61%), Positives = 147/186 (79%), Gaps = 1/186 (0%)
Query: 1 MDNLSEPLLAEIIKRIAKTSDRNSLSLVSKQLYTIDAEQRDAIHVGCGLHPATEALASLC 60
M+ L + L+ EI+KRI TSD +SLSLVSK+LY I+AE R +I +G L PAT+A+ SLC
Sbjct: 1 MEGLPDALIGEIVKRIESTSDLSSLSLVSKRLYKIEAEHRHSIRIGHNLPPATDAIISLC 60
Query: 61 SRFPNLWKVVIDYSGWISIHGKQLDNQGLLVLSSHCSSLTDLTLNFCSYIDDSGIGYLAY 120
SRF NL+ V I+YSGW HG QLDN GL +LSS+C SL+D+TL+FCSYIDD+G+GYLA+
Sbjct: 61 SRFHNLFNVDINYSGWTQGHGNQLDNHGLHILSSYCLSLSDITLSFCSYIDDTGLGYLAF 120
Query: 121 CKKLRSFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMKV-GSVEWLEYLGRAGSLEEL 179
CKKL + RLN A I+S GLL+VAVGCK+L HL++C K+ G+ EWL+YLG GSLEEL
Sbjct: 121 CKKLMTLRLNSAKRITSSGLLAVAVGCKNLSAIHLINCNKISGTFEWLKYLGSDGSLEEL 180
Query: 180 VVKDCK 185
VVK+C+
Sbjct: 181 VVKNCE 186
>Os12g0517000 Cyclin-like F-box domain containing protein
Length = 482
Score = 200 bits (508), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 115/185 (62%), Positives = 136/185 (73%), Gaps = 1/185 (0%)
Query: 1 MDNLSEPLLAEIIKRIAKTSDRNSLSLVSKQLYTIDAEQRDAIHVGCGLHPATEALASLC 60
M++L LAEI+KRI +TSD +SLSLVSK+LYTIDAE R I VG GL PA EAL +LC
Sbjct: 1 MEDLPGAALAEIMKRITRTSDLSSLSLVSKRLYTIDAEHRSTIRVGRGLWPAKEALLTLC 60
Query: 61 SRFPNLWKVVIDYSGWISIHGKQLDNQGLLVLSSHCSSLTDLTLNFCSYIDDSGIGYLAY 120
SRF NL KV I+Y G Q+DNQGLL LS+ C LTDL L+FC YIDDSG+ YL
Sbjct: 61 SRFSNLRKVEINYHDSTRGDGNQIDNQGLLTLSTCCPLLTDLILSFCYYIDDSGLAYLTD 120
Query: 121 CKKLRSFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMKV-GSVEWLEYLGRAGSLEEL 179
CKKL S RLN A I+S GLL VA+GCK+L HL++C K+ G+ EWL+YLG GSLEEL
Sbjct: 121 CKKLVSLRLNSAKNITSSGLLVVAIGCKNLSGLHLINCNKISGNPEWLKYLGSDGSLEEL 180
Query: 180 VVKDC 184
VVK+C
Sbjct: 181 VVKNC 185
>Os12g0517100 Cyclin-like F-box domain containing protein
Length = 501
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/197 (55%), Positives = 136/197 (69%), Gaps = 9/197 (4%)
Query: 1 MDNLSEPLLAEIIKRIAKTSDRNSLSLVSKQLYTIDAEQRDAIHVGCGLHPATEALASLC 60
+++L + LLAEI+KRI TSD S+SLVSK+LYTI+AEQR +I VG L PA +AL++LC
Sbjct: 31 LEDLPDALLAEIVKRITNTSDLKSISLVSKRLYTIEAEQRSSIRVGSDLCPAIDALSALC 90
Query: 61 SRFPNLWKVVIDYSGWISIHGKQLDNQGLLVLSSHCSSLTDLTLNFCSYIDDSGIGYLAY 120
SRFPNL +V +DYSGW H L+ + S H L DLTL YIDD +G LA
Sbjct: 91 SRFPNLLEVEMDYSGW-KFHWNLLEKH---IFSLHFPVLRDLTL----YIDDIRMGCLAS 142
Query: 121 CKKLRSFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMK-VGSVEWLEYLGRAGSLEEL 179
CK L S RLN AI S GLLSVAVGCK+L + H++ C VGS +WLEY+G AGSLEEL
Sbjct: 143 CKNLMSLRLNSVSAIGSCGLLSVAVGCKNLTSLHIIKCNHIVGSDKWLEYIGSAGSLEEL 202
Query: 180 VVKDCKCRNKSWLVGLG 196
VVK+CK ++ L+ G
Sbjct: 203 VVKNCKRISQYDLLKFG 219
>Os04g0371600 Leucine-rich repeat, cysteine-containing containing protein
Length = 300
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 103/144 (71%), Gaps = 3/144 (2%)
Query: 43 IHVGCGLHPATEALASLCSRFPNLWKVVIDYSGWISIHGKQLDNQGLLVLSSHCSSLTDL 102
I VG GL A EAL +L S+FPNL KV I+YSGW +G Q+DNQGL VLS L DL
Sbjct: 8 ICVGSGL--AIEALPALFSQFPNLHKVEINYSGWAPGNGSQIDNQGLRVLSFSLPLLNDL 65
Query: 103 TLNFCSYIDDSGIGYLAYCKKLRSFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMKV- 161
TL+FCS I+DSG+ L CK L S +LN P I+SRGLLS+AVGCK+L + HL +C +
Sbjct: 66 TLSFCSEINDSGLACLTNCKMLMSLKLNSTPEITSRGLLSLAVGCKTLSSLHLNNCKGIT 125
Query: 162 GSVEWLEYLGRAGSLEELVVKDCK 185
S EWLE+LG GSLEELVVK+CK
Sbjct: 126 SSTEWLEHLGTNGSLEELVVKNCK 149
>Os04g0370800
Length = 164
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 126 SFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMKV-GSVEWLEYLGRAGSLEELVVKDC 184
S RLN P ++S GLL +AVGCK+L + +L DC + GS EWLE+LG GSLEEL VK+C
Sbjct: 2 SLRLNSIPELTSSGLLLLAVGCKALSSVYLNDCKGIAGSTEWLEHLGANGSLEELAVKNC 61
Query: 185 K 185
K
Sbjct: 62 K 62
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,015,316
Number of extensions: 269655
Number of successful extensions: 760
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 740
Number of HSP's successfully gapped: 10
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)