BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0764700 Os02g0764700|AK107146
(242 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0764700 Similar to Ethylene-responsive transcription f... 323 9e-89
Os09g0457900 Similar to AP2 domain containing protein RAP2.... 86 3e-17
Os08g0474000 Similar to AP2 domain containing protein RAP2.... 76 3e-14
Os02g0546800 Pathogenesis-related transcriptional factor an... 69 2e-12
Os01g0868000 Pathogenesis-related transcriptional factor an... 68 6e-12
Os12g0168100 Similar to AP2 domain containing protein RAP2.... 67 1e-11
Os04g0398000 Pathogenesis-related transcriptional factor an... 67 2e-11
Os05g0437133 Pathogenesis-related transcriptional factor an... 67 2e-11
Os02g0546600 Similar to AP2 domain containing protein RAP2.... 66 3e-11
Os08g0537900 Similar to Ethylene-responsive transcription f... 66 3e-11
Os03g0183000 Similar to AP2 domain containing protein RAP2.... 65 3e-11
>Os02g0764700 Similar to Ethylene-responsive transcription factor 4
(Ethylene-responsive element binding factor 4) (Related
to APETALA-2 protein 5) (EREBP-4) (AtERF4)
Length = 242
Score = 323 bits (827), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 166/242 (68%), Positives = 166/242 (68%)
Query: 1 MVPRVERGGGGFHLPNSEREDSLFIRALISVVSGDTTVPTLLPEPTMATVVAGAATCARC 60
MVPRVERGGGGFHLPNSEREDSLFIRALISVVSGDTTVPTLLPEPTMATVVAGAATCARC
Sbjct: 1 MVPRVERGGGGFHLPNSEREDSLFIRALISVVSGDTTVPTLLPEPTMATVVAGAATCARC 60
Query: 61 GVDGCIGVDCEVVVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
GVDGCIGVDCEVVVL
Sbjct: 61 GVDGCIGVDCEVVVLAAAAGSSCSDEEDEGECTTGAVASGGVTGGVGKRRPRRRSGGEGS 120
Query: 121 XXXXXXXXPWGKWAAEIRDPRRAVCKWLGTFDTXXXXXXXXXXXXLEFRGQRAKLNFPAS 180
PWGKWAAEIRDPRRAVCKWLGTFDT LEFRGQRAKLNFPAS
Sbjct: 121 RYRGVRRRPWGKWAAEIRDPRRAVCKWLGTFDTAEDAARAYDVAALEFRGQRAKLNFPAS 180
Query: 181 TAAQQPRPLLHHNLRENCGSNASSPVHXXXXXXXXXXXKDQEIWDGLREIMMLDDGSFWS 240
TAAQQPRPLLHHNLRENCGSNASSPVH KDQEIWDGLREIMMLDDGSFWS
Sbjct: 181 TAAQQPRPLLHHNLRENCGSNASSPVHAPEHARTAAAAKDQEIWDGLREIMMLDDGSFWS 240
Query: 241 MP 242
MP
Sbjct: 241 MP 242
>Os09g0457900 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 274
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 60/134 (44%), Gaps = 24/134 (17%)
Query: 129 PWGKWAAEIRDPRRAVCKWLGTFDTXXXXXXXXXXXXLEFRGQRAKLNFPASTAAQQPRP 188
PWGKWAAEIRDPRRAV KWLGTFDT LEFRG RAKLNFP S +P P
Sbjct: 137 PWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDRAALEFRGARAKLNFPCS----EPLP 192
Query: 189 LLHHNLREN--------------------CGSNASSPVHXXXXXXXXXXXKDQEIWDGLR 228
+ C ++A ++WDGL+
Sbjct: 193 MPSQRNGNGGDAVTAATTTAEQMTPTLSPCSADAEETTTPVDWQMGADEAGSNQLWDGLQ 252
Query: 229 EIMMLDDGSFWSMP 242
++M LD+ W P
Sbjct: 253 DLMKLDEADTWFPP 266
>Os08g0474000 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 219
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 58/132 (43%), Gaps = 28/132 (21%)
Query: 129 PWGKWAAEIRDPRRAVCKWLGTFDTXXXXXXXXXXXXLEFRGQRAKLNFPASTAAQQPRP 188
PWGKWAAEIRDPRRAV KWLGTFDT +EFRG RAKLNFP P
Sbjct: 83 PWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDRAAVEFRGPRAKLNFPF------PEQ 136
Query: 189 LLHHNLRENCGSNASS----------------------PVHXXXXXXXXXXXKDQEIWDG 226
L H+ S A+ P ++W+G
Sbjct: 137 LSAHDDSNGDASAAAKSDTLSPSPRSADADEQVEHTRWPQGGGGGGGGGGGETGDQLWEG 196
Query: 227 LREIMMLDDGSF 238
L+++M LD+G
Sbjct: 197 LQDLMQLDEGGL 208
>Os02g0546800 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 216
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 129 PWGKWAAEIRDPRRAVCKWLGTFDTXXXXXXXXXXXXLEFRGQRAKLNFPASTAAQQPRP 188
PWGKWAAEIRDPR+A WLGTF T L FRG+RAKLNFP A++ RP
Sbjct: 100 PWGKWAAEIRDPRKAARVWLGTFRTTEDAARAYDAAVLRFRGRRAKLNFP-EEASRPRRP 158
Query: 189 LLHHNL 194
H++
Sbjct: 159 WKGHDV 164
>Os01g0868000 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 351
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 32/50 (64%)
Query: 129 PWGKWAAEIRDPRRAVCKWLGTFDTXXXXXXXXXXXXLEFRGQRAKLNFP 178
PWGKWAAEIRDP +A WLGTF+T L FRG RAKLNFP
Sbjct: 137 PWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFP 186
>Os12g0168100 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 341
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 32/50 (64%)
Query: 129 PWGKWAAEIRDPRRAVCKWLGTFDTXXXXXXXXXXXXLEFRGQRAKLNFP 178
PWGKWAAEIRDP +A WLGTFDT L FRG RAKLNFP
Sbjct: 163 PWGKWAAEIRDPHKAARVWLGTFDTAEDAARAYDGAALRFRGSRAKLNFP 212
>Os04g0398000 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 268
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 33/50 (66%)
Query: 129 PWGKWAAEIRDPRRAVCKWLGTFDTXXXXXXXXXXXXLEFRGQRAKLNFP 178
PWGKWAAEIRDP++A WLGTFDT L F+G +AKLNFP
Sbjct: 74 PWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDEAALRFKGTKAKLNFP 123
>Os05g0437133 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 228
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 32/50 (64%)
Query: 129 PWGKWAAEIRDPRRAVCKWLGTFDTXXXXXXXXXXXXLEFRGQRAKLNFP 178
PWGKWAAEIRDP +A WLGTF+T L FRG RAKLNFP
Sbjct: 35 PWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFP 84
>Os02g0546600 Similar to AP2 domain containing protein RAP2.2 (Fragment)
Length = 247
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 129 PWGKWAAEIRDPRRAVCKWLGTFDTXXXXXXXXXXXXLEFRGQRAKLNFPASTAAQQPRP 188
PWGKWAAEIRDPR+A WLGTF T L FRG+RAKLNFP + RP
Sbjct: 133 PWGKWAAEIRDPRKAARVWLGTFRTAEDAARAYDAAALRFRGRRAKLNFPEEVS----RP 188
Query: 189 LLHHNL 194
H++
Sbjct: 189 WQGHDV 194
>Os08g0537900 Similar to Ethylene-responsive transcription factor 3
(Ethylene-responsive element binding factor 3) (EREBP-3)
(AtERF3)
Length = 541
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 129 PWGKWAAEIRDPRRAVCKWLGTFDTXXXXXXXXXXXXLEFRGQRAKLNFP-----ASTAA 183
PWGKWAAEIRDP +A WLGTFDT + F+G +AK+NFP AS AA
Sbjct: 370 PWGKWAAEIRDPVKAARVWLGTFDTAEDAARAYDAAAVRFKGSKAKVNFPDEVAGASIAA 429
Query: 184 -QQPRPLLHH 192
Q PR HH
Sbjct: 430 VQLPRHHQHH 439
>Os03g0183000 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 334
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 36/59 (61%)
Query: 129 PWGKWAAEIRDPRRAVCKWLGTFDTXXXXXXXXXXXXLEFRGQRAKLNFPASTAAQQPR 187
PWGKWAAEIRDP + WLGTF+T RG +AK+NFPA+ AA +PR
Sbjct: 118 PWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGSKAKVNFPATPAAARPR 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,639,473
Number of extensions: 208648
Number of successful extensions: 708
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 16
Length of query: 242
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 144
Effective length of database: 11,918,829
Effective search space: 1716311376
Effective search space used: 1716311376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)