BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0684900 Os02g0684900|AK106462
(431 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0684900 Similar to Chromosome condensation regulator p... 864 0.0
Os04g0583700 Pleckstrin homology-type domain containing pro... 339 2e-93
Os04g0686200 Similar to Chromosome condensation regulator p... 137 1e-32
Os01g0700200 Similar to Chromosome condensation regulator p... 103 3e-22
Os05g0106700 Regulator of chromosome condensation/beta-lact... 97 2e-20
Os05g0384800 Similar to Chromosome condensation regulator p... 91 2e-18
Os01g0964800 Similar to Chromosome condensation regulator p... 89 5e-18
Os01g0952300 Pleckstrin homology-type domain containing pro... 88 1e-17
>Os02g0684900 Similar to Chromosome condensation regulator protein (Fragment)
Length = 431
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/431 (96%), Positives = 414/431 (96%)
Query: 1 HRPLSSKDQSVCSNCQLTFGFTRKKHNCYNCGSMFCNSCSNNKVSRAALAPDRSKRYRVC 60
HRPLSSKDQSVCSNCQLTFGFTRKKHNCYNCGSMFCNSCSNNKVSRAALAPDRSKRYRVC
Sbjct: 1 HRPLSSKDQSVCSNCQLTFGFTRKKHNCYNCGSMFCNSCSNNKVSRAALAPDRSKRYRVC 60
Query: 61 DACFSQMQKVEEHRKLDPQQKIQKDEVCPIEIRSYTPKLARIFKEANAIMEKMASAQSPH 120
DACFSQMQKVEEHRKLDPQQKIQKDEVCPIEIRSYTPKLARIFKEANAIMEKMASAQSPH
Sbjct: 61 DACFSQMQKVEEHRKLDPQQKIQKDEVCPIEIRSYTPKLARIFKEANAIMEKMASAQSPH 120
Query: 121 QRSQNLAVPDHVRTLRWGLVECPSQFRCVRESIPYCSTLNKQTVSGSIVRVMNETMAPKP 180
QRSQNLAVPDHVRTLRWGLVECPSQFRCVRESIPYCSTLNKQTVSGSIVRVMNETMAPKP
Sbjct: 121 QRSQNLAVPDHVRTLRWGLVECPSQFRCVRESIPYCSTLNKQTVSGSIVRVMNETMAPKP 180
Query: 181 ASSLLKSANDSKAELDLMENILLEEVKQLQEQVTTLAKQCRQRSLKVQLYKRKVEETWLX 240
ASSLLKSANDSKAELDLMENILLEEVKQLQEQVTTLAKQCRQRSLKVQLYKRKVEETWL
Sbjct: 181 ASSLLKSANDSKAELDLMENILLEEVKQLQEQVTTLAKQCRQRSLKVQLYKRKVEETWLI 240
Query: 241 XXXXXXXXXXXXXXXXVLIDQHDFLSKNLLAGEKLDNSRIMPSHIASAKSLKAELPDPPD 300
VLIDQHDFLSKNLLAGEKLDNSRIMPSHIASAKSLKAELPDPPD
Sbjct: 241 AKDEAAKCKAAKDIIKVLIDQHDFLSKNLLAGEKLDNSRIMPSHIASAKSLKAELPDPPD 300
Query: 301 KNVFTSEFQQSKSNRDHHNSRQVDRECTQPSIASMANYSVTHQNCRRTSNGSTRCTEGTD 360
KNVFTSEFQQSKSNRDHHNSRQVDRECTQPSIASMANYSVTHQNCRRTSNGSTRCTEGTD
Sbjct: 301 KNVFTSEFQQSKSNRDHHNSRQVDRECTQPSIASMANYSVTHQNCRRTSNGSTRCTEGTD 360
Query: 361 ATTAPTDSNGVIEQIERGVYATVVTSPGGKKCIKRIRFSRKHFGEDQAQKWWEANESMIF 420
ATTAPTDSNGVIEQIERGVYATVVTSPGGKKCIKRIRFSRKHFGEDQAQKWWEANESMIF
Sbjct: 361 ATTAPTDSNGVIEQIERGVYATVVTSPGGKKCIKRIRFSRKHFGEDQAQKWWEANESMIF 420
Query: 421 GKYSSMEQTVG 431
GKYSSMEQTVG
Sbjct: 421 GKYSSMEQTVG 431
>Os04g0583700 Pleckstrin homology-type domain containing protein
Length = 1065
Score = 339 bits (870), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/424 (43%), Positives = 262/424 (61%), Gaps = 6/424 (1%)
Query: 1 HRPLSSKDQSVCSNCQLTFGFTRKKHNCYNCGSMFCNSCSNNKVSRAALAPDRSKRYRVC 60
H+ +S KDQSVCS+CQ+ FGFTRK+HNCYNCGSMFC+SC++NK++ AALAPD ++RYRVC
Sbjct: 605 HKTMSMKDQSVCSSCQMVFGFTRKEHNCYNCGSMFCSSCTSNKITMAALAPDTNRRYRVC 664
Query: 61 DACFSQMQKVEEHRKLDPQQKIQKDEVCPIEIRSYTPKLARIFKEANAIMEKMASAQSPH 120
DACF Q+QKV + K + KI K E+ +E+++YTPKL+R+FKEAN EKMAS Q +
Sbjct: 665 DACFYQLQKVVDSSKDKSRLKISKGEMFKLELKAYTPKLSRLFKEANFFAEKMASVQGTN 724
Query: 121 QRSQNLAVPDHVRTLRWGLVECPSQFRCVRESIPYCSTLNKQTVSGSIVRVMNETMAPKP 180
QR++ A +T RWG VECP+ F ++S N + + S + M+++ K
Sbjct: 725 QRNEEPATAVQTKTERWGQVECPALFISAQDSFQTQPVSNSEGCAISFSQRMHDSAVLKS 784
Query: 181 ASSLLKSANDSKAELDLMENILLEEVKQLQEQVTTLAKQCRQRSLKVQLYKRKVEETWLX 240
S L+ + + E+++M+ L +VKQL QV L +QC+Q+S+ VQLYK+K+++TWL
Sbjct: 785 GVS-LRFTDAQREEIEMMQTELQGQVKQLHSQVAVLTEQCQQKSVMVQLYKQKLDDTWLV 843
Query: 241 XXXXXXXXXXXXXXXXVLIDQHDFLSKNLLAGEKLDNSRIMPSHIASAKSLKAELPDPPD 300
VL DQ + LS+ L G+ +NS+I P+ I + K EL
Sbjct: 844 VRDEAARCKAAKDIIKVLTDQCNALSEKLSIGQLSENSKITPNSIP-MQPTKIELQGNTG 902
Query: 301 KNVFTSEFQQSKSNRDHHNSRQVDRECTQPSIASMA-NYSVTHQNCRRTSNGSTRCTEGT 359
+N+ T + Q + ++H +S Q ++EC S A + + + QN R + TE
Sbjct: 903 RNLVTRKLGQLNNTQNHGSSIQTEKECVPLSNAVVPEDVPFSQQNGARKFSSDGYTTEAP 962
Query: 360 DATTAPTDSNGVIEQIERGVYATVVTSPGGKKCIKRIRFSRKHFGEDQAQKWWEANESMI 419
A PTDS V EQIE GVY T TS GKK IKRIRFSRKHFGE +AQ WWE N++ +
Sbjct: 963 LA-APPTDS--VTEQIEHGVYVTFSTSSCGKKDIKRIRFSRKHFGEKEAQHWWEHNKTRV 1019
Query: 420 FGKY 423
+ Y
Sbjct: 1020 YDNY 1023
>Os04g0686200 Similar to Chromosome condensation regulator protein (Fragment)
Length = 1057
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 134/469 (28%), Positives = 213/469 (45%), Gaps = 72/469 (15%)
Query: 1 HRPLSSKDQSVCSNCQLTFGFTRKKHNCYNCGSMFCNSCSNNKVSRAALAPDRSKRYRVC 60
H+ +S +QS CS+C+ FGFTRK+HNCYNCG + C+SCS+ K RAAL+P+ K YRVC
Sbjct: 603 HKSVSGMEQSQCSSCRQPFGFTRKRHNCYNCGLVHCHSCSSKKALRAALSPNPGKPYRVC 662
Query: 61 DACFSQMQKVEEHRKLDPQQKIQKDEVCPIEIRSYTPKLARIFKEANAIMEKMASAQSPH 120
D+C+ ++ KV LD K+ I S K+ ++ ++ASA S
Sbjct: 663 DSCYLKLSKV-----LDSGIGHNKNNTPRIPGDSKADKM-------DSKGNRVASANSS- 709
Query: 121 QRSQNLAVPDHVRTLRWGLVECPSQFRCVRE--SIPYCSTLNKQ----TVSGSIVRV--- 171
+NL V +T ++ + P QF + + IP+ ++Q T S ++R+
Sbjct: 710 DMIKNLDVKAAKQTKKY---DYPPQFPAILQLKDIPFIGAADQQPNDSTYSSPLLRLPNL 766
Query: 172 MNETMAPKPASSLLKSANDSKAELDLMENILLEEVKQLQEQVTTLAKQCRQRSLKVQLYK 231
+ + + +L+ AN+ +L +EV++L+E+V +L +Q Q+ +Q +
Sbjct: 767 NSSSSLSSESFDILRDANE----------LLKQEVQKLKEEVNSLRQQREQQDADLQKSE 816
Query: 232 RKVEETWLXXXXXXXXXXXXXXXXXVLIDQHDFLSKNLLAGE---KLDNSRIMPSHIASA 288
K E L Q +++ L K +P S
Sbjct: 817 AKAHEAMTLASEEASKSKAAKDVIKSLTAQLKEMAERLPPASCDTKQTRQPYLPGGAVSP 876
Query: 289 KSLKA----------ELPDPPDK------NVFTSEFQQ-SKSNRDH---HNSRQVDRECT 328
+ + + P P N F ++ Q S+ N + H+SR + T
Sbjct: 877 DTGRENQKRYEPGSFQYPQTPTSVASARFNGFLAQAHQISEPNGNTMVPHDSRHENNGNT 936
Query: 329 Q--PSIASMANYSVTHQNCRRTSNGSTRCTE-------GTDATTAPTDSNGV----IEQI 375
+ P M N +T RT + R TE G + + + SN V IEQ
Sbjct: 937 KEFPVAQQMTNGGMTGYR-PRTEDHDRRETERFQINLHGFNMRGSSSPSNQVEAEWIEQY 995
Query: 376 ERGVYATVVTSPGGKKCIKRIRFSRKHFGEDQAQKWWEANESMIFGKYS 424
E GVY T+V+ G K +KR+RFSR+ FGE QA+ WW N ++ KY+
Sbjct: 996 EPGVYLTLVSLRDGTKELKRVRFSRRRFGEHQAESWWNDNREKVYDKYN 1044
>Os01g0700200 Similar to Chromosome condensation regulator protein (Fragment)
Length = 1044
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 41/252 (16%)
Query: 1 HRPLSSKDQSVCSNCQLTFGFTRKKHNCYNCGSMFCNSCSNNKVSRAALAPDRSKRYRVC 60
H+ +S DQSVC+ C+ FGFTRK+H+CYNCG + C++CS+ KV +AALAP K +RVC
Sbjct: 599 HKWVSGADQSVCTGCRQAFGFTRKRHDCYNCGLVHCHACSSRKVLKAALAPTPGKPHRVC 658
Query: 61 DACFSQMQKVE------------EHRKLDPQQKIQKDEVCPIEIRSYTPKLARIFKEANA 108
D+CF +++ E R +D ++K+++ E+ P R+ P + + E A
Sbjct: 659 DSCFLKLKAAETGSNNSNRRNAVTRRSIDGREKLERPEIRP--SRTTAPAESVKYTEVKA 716
Query: 109 IMEKMASAQSPHQRSQNLAVPDHVRTLRWGLVECPSQFRCVRES--IPYCSTLNKQTVSG 166
M R+ ++ + L + ++ + V S +P ST + T
Sbjct: 717 ARNDM--------RASQISSLLQFKDLSFSALQPTAMSPAVTMSPAVPALSTPSPYT--- 765
Query: 167 SIVRVMNETMAPKPASSLLKSANDSKAELDLME---NILLEEVKQLQEQVTTLAKQCRQR 223
+T +P PA K ++D ++ +L +E+ +LQ QV +L ++C +
Sbjct: 766 ------KKTKSPAPAIPQFP-----KTDIDNLQKSNELLNQEMLKLQSQVDSLKQKCEAQ 814
Query: 224 SLKVQLYKRKVE 235
++Q+ +K +
Sbjct: 815 HEQLQISDKKTK 826
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 367 DSNG---VIEQIERGVYATVVTSPGGKKCIKRIRFSRKHFGEDQAQKWWEANESMIFGKY 423
D++G +IEQ E GVY T++ G K KR+RFS+K F E+QA++WW N+ +F KY
Sbjct: 962 DTHGEVQLIEQFEPGVYVTLIQLKDGSKVFKRVRFSKKKFAENQAEEWWRENQERVFKKY 1021
Query: 424 S 424
S
Sbjct: 1022 S 1022
>Os05g0106700 Regulator of chromosome condensation/beta-lactamase-inhibitor
protein II domain containing protein
Length = 685
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 1 HRPLSSKDQSVCSNCQLTFGFTRKKHNCYNCGSMFCNSCSNNKVSRAALAPDRSKRYRVC 60
H+ +S DQS CS+CQ FGFTRK+HNCYNCG + CN+C++ K RAALAP+ K YRVC
Sbjct: 421 HKWVSGADQSQCSSCQQPFGFTRKRHNCYNCGLVHCNACTSRKALRAALAPNPGKPYRVC 480
Query: 61 DACFSQMQKVEEHRKLDPQQKI 82
D+CF +++ + + ++ I
Sbjct: 481 DSCFLKLKNALDSDSFNKRKDI 502
>Os05g0384800 Similar to Chromosome condensation regulator protein (Fragment)
Length = 1086
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 54/72 (75%)
Query: 1 HRPLSSKDQSVCSNCQLTFGFTRKKHNCYNCGSMFCNSCSNNKVSRAALAPDRSKRYRVC 60
H+ +S DQS+CS C+L F RK+HNCYNC +FC++CS+ K +A+LAP+ +K YRVC
Sbjct: 655 HKWVSGVDQSMCSGCRLPFNLRRKRHNCYNCALVFCHACSSKKSLKASLAPNPNKPYRVC 714
Query: 61 DACFSQMQKVEE 72
D+C+S++ K E
Sbjct: 715 DSCYSKLNKGPE 726
>Os01g0964800 Similar to Chromosome condensation regulator protein (Fragment)
Length = 496
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 53/68 (77%)
Query: 1 HRPLSSKDQSVCSNCQLTFGFTRKKHNCYNCGSMFCNSCSNNKVSRAALAPDRSKRYRVC 60
H+ +S +QS C++C+ FGFTRK+HNC+NCG + CN+C++ K RAALAP+ +K YRVC
Sbjct: 420 HKWVSGAEQSQCASCRQPFGFTRKRHNCHNCGLVHCNACTSRKAVRAALAPNPAKPYRVC 479
Query: 61 DACFSQMQ 68
D+CF ++
Sbjct: 480 DSCFLKLN 487
>Os01g0952300 Pleckstrin homology-type domain containing protein
Length = 1133
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 53/72 (73%)
Query: 1 HRPLSSKDQSVCSNCQLTFGFTRKKHNCYNCGSMFCNSCSNNKVSRAALAPDRSKRYRVC 60
H+ +S DQS+CS C+ F RK+HNCYNC +FC+SCS+ K +A+LAP+ +K YRVC
Sbjct: 656 HKWVSGSDQSMCSGCRQPFNLRRKRHNCYNCALVFCHSCSSKKSLKASLAPNPNKPYRVC 715
Query: 61 DACFSQMQKVEE 72
D+C+S++ K E
Sbjct: 716 DSCYSKLTKGLE 727
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.127 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,324,984
Number of extensions: 505404
Number of successful extensions: 1618
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1616
Number of HSP's successfully gapped: 9
Length of query: 431
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 327
Effective length of database: 11,605,545
Effective search space: 3795013215
Effective search space used: 3795013215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)